CI01000004_08939621_08940367


Basic Information

Item Value
gene id CI01000004_08939621_08940367
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8939329 ~ 8940413 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000004_08939621_08940367.mRNA
AAGGAACATGCCTTTTCAATACTGCATTTAAGACTGCAAATGAATGATGGCTGGGAAAGTGGAAAAGGTGTCCAAATACGAAACTTTAAAGCTTTTGGAAAAGTGCCGGAAGGAAAGAGACGACGCTTTGCACCGCGAGAATGTTATGAGGGAGAAAATGAGACAATATGAGTCTCGAATGAGATCAACCGAAGCGCTCAAACAGAAACTGAAGCAATTGACTTTGGACAACAAGGAGCTGAGGAAACAAGTGAAGATCCTGAGGGCTGAAATTGGTTTGGAGTCCAGTCCCAAATTTCACGGTAAAACCACCAAGGATATAATCAACGACCTGCATGAGAAGGAGCGCGAGTGCAATTCACTTGTTGAAAAAGCGGGCAAATTAAGTTTGACAATTGATGAATTAACATCTGAACTGGCCAACACCGTCACCTCAAAGACTCTACTGGAGGACCAAGTCCAGTCCCTGCAACAGAACCTGAAGGATATGACAAACAATCAGCGACGTCTTCTGAAGCTCTGGGAGGACAAGAAGGCTCAGCGGGAGCAGCTTTCACTGCCCGCGATACCGCAGAGACCCGGACAGAAGCCGGTGGTGCATAAAGGCGTCCAGACGGAGATGTCCATCAGTTCAACCCAGATATTACCCACTAATGCGTTTGAGACTAAGACCCGCCGAGAGATCGATAAAAGCAGAACTAATCTGGAGAGACGCAGCATCACGTTAGCAAATGGCACTCATCGAGAGAAAAACGCGTTAATTCAGAACGAAGCGAAGGGAATACACAACTGACAATAACTATTTCATGAAAACTTTTTTTTTTTTTTTTTTTTGTCTATCTACGCATCAATTAGGCTGCTCTATGCATAAAATACAGCATTATAATACTATAAAATAAATGTTATTTTAAAATATGTTTAAATAATTAAGAAATAACCTGATGGAAACATATTTGAACACTGTATATTATTGTAATTACCATATTTATTTCTTATGTATTGACTCATTATTACATTTTTTAGACTGCTGTTTGATGTAATGCCCACAAAACATTGTGTATAATTAATTAGTGTTTAACATTAAA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000004_08939621_08940367.mRNA True 1085 mRNA 0.40 1 8939329 8940413

Neighbor

gene id symbol gene type direction distance location
CI01000004_08931605_08938354 NDC1 coding downstream 975 8930974 ~ 8938354 (-)
CI01000004_08896031_08915598 NA coding downstream 23667 8895575 ~ 8915662 (-)
CI01000004_08887155_08890419 NA coding downstream 48910 8885759 ~ 8890419 (-)
CI01000004_08878465_08881325 BEST4 coding downstream 57844 8878465 ~ 8881485 (-)
CI01000004_08861514_08864815 MGC81873, ACADM coding downstream 74514 8861240 ~ 8864815 (-)
CI01000004_08941940_08945864 YIPF1 coding upstream 1505 8941918 ~ 8945864 (-)
CI01000004_08953993_08957525 TMEM59 coding upstream 13439 8953852 ~ 8957525 (-)
CI01000004_08958415_08969605 U2SURP coding upstream 17866 8958279 ~ 8969605 (-)
CI01000004_09006723_09020870 NA coding upstream 66310 9006723 ~ 9020870 (-)
CI01000004_09159241_09169070 NA coding upstream 218062 9158475 ~ 9171717 (-)
G29943 NA non-coding downstream 62130 8874697 ~ 8877199 (-)
G29955 NA non-coding downstream 65517 8872133 ~ 8873812 (-)
G29989 NA non-coding downstream 116852 8822269 ~ 8822477 (-)
G29986 NA non-coding downstream 123792 8813396 ~ 8815537 (-)
G29948 NA non-coding downstream 194923 8741906 ~ 8744406 (-)
G30009 NA non-coding upstream 38611 8979024 ~ 8980984 (-)
G30012 NA non-coding upstream 104012 9044425 ~ 9044678 (-)
G30013 NA non-coding upstream 109543 9049956 ~ 9050446 (-)
G30024 NA non-coding upstream 156308 9096721 ~ 9096984 (-)
G30041 NA non-coding upstream 217032 9157445 ~ 9157660 (-)
G29746 NA other downstream 581202 8354498 ~ 8358127 (-)
G29656 NA other downstream 973829 7964364 ~ 7965500 (-)
G29388 NA other downstream 2307422 6631293 ~ 6631907 (-)
CI01000004_06539836_06541252 NA other downstream 2393757 6538904 ~ 6541252 (-)
CI01000004_05617072_05627369 NA other downstream 3311815 5616644 ~ 5628289 (-)
G30316 NA other upstream 437524 9377937 ~ 9406921 (-)
G31203 NA other upstream 1806024 10746437 ~ 10750641 (-)
CI01000004_11407198_11412220 ADCYAP1B, ADCYAP1 other upstream 2467052 11406957 ~ 11412907 (-)
G32150 NA other upstream 2836106 11776519 ~ 11780951 (-)
G32207 NA other upstream 3435755 12376168 ~ 12384780 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016417 zgc:113691 coding NC_007113.7 CM002886.2 26591968 ~ 26596794 (-)