lsm14b (lsm14b,LOC107748998,LOC107569639)


Basic Information

Item Value
gene id lsm14b
gene name lsm14b,LOC107748998,LOC107569639
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25631361 ~ 25634808 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236244.1
TAGGGACGTTCTCGTACAGTCCACGCTTCAGGAGAGAGATCATGGCGACAGTGTCGCACAAGCTTGTCTGAACGGATTCGGCGTGTATTTGAAGTCTCTTTCATCAGCTGAAGTGGTTTGTGTTGAGATAATGAGCGGCGGTACTCCTTACATCGGCAGTAAGATCAGTCTGATCTCGAAAGCTCAGATTCGCTATGAGGGTATATTATACACCATTGACACGGATAACTCCACCGTGGCTCTGGCGAAAGTGAGGTCCTTTGGGACGGAGGGGCGTCCGACAGACCGGCCCGTGCCACCGAGGGACGAGGTCTTCGAGTACATCATCTTCAGAGGAAGTGACATCAAAGACATCACGGTCTGCGAGCCTCTGAAGATTCACCACGGTCTTCCTCAGGACCCTGCTATCGTTCAGTCGTCTGTGGGGTCGGTCCACTACCCCTCGTCTCAGGGCGGCTACAGCCCTTACCGGAGCGTGCTGCCCTCCTACAGCCAGCTGGCCGCCAGCTCTCTTCTCAGCCAGCAGTACGCTGCCGCCCTGGGCCTCGGCTCCGGTTTGCCTGGCGTTTCTGCAAGGAGAGGGCCGATGGTAGAGCAGGCGGTTCAGACGGTCCCTGCGGAGAAGGCGGCGCAGAAGAAGGGTTTGTTTGGAGCGCAGCAGCAGGGAGGAGAGACGGCACGAGCGCAGAGGGCCCGACCCCCGGCCCAGAGAGctgcacAGCAAGGAGCCATGAAAGGACAGAGTCCAGCCAACGATGAGAACAAACCCCCAAGCAGCAGGAGAAAACAGGGAGCTCGGCGGTCCAGGAACCGCGGCCGGGGTCAGATCCTCGTAGGCAACGCCAAGCCCAGCACCCTGCAGTTTGAGTCTGACTTCGACTTCGAGATGGCCAACGCTCAGTTTAACAAAGAGGACCTGGAGAAAGAGATCGAAGACAAGCTCAGCGTTCAAGAACCAAAGGAGAGCCTCGAGGAAAGGAGCGATAAGGAGCAGGAGAATCCTGTCCCTGAGAGCGAGAGTGCTGTTGAAGAGGATCCGCTGGGGCCCAAGTGCTTCTACAATAAAGCCAAGTGCTTCTTCGACAACATCTCCTCAGAACTCAAGTCGAGacGTACCACATGGGCTGAGGAGAGGAAGCTGAATGTGGAGACCTTTGGGGTCCCTGGGAGGTTTCTGAGGGGCCGTGGGTTTCGAGGTAATTTCAGAGGGAGACGGGGCCGAGGGGCAGCGCAGCACCCTGTCCCGCAGAGAGTAGGGAGCGGACGGCTGTGAGGCCCGATTCAGCCTTTCTCTGGGATGTGGACGAGTCTCGTCTGTGAGCTTGGTTTCTAGTGTCTGAGGTTCTTCAGTGGTAAATATCACTAGACTGTTCTCGTCCTCTTGTGAAAAATGGCTACGTTATGTTAAACtgcctcttttctttttgtttaatgtaaagAATCTCGCAGCTTTAATGTGAAATGCACCTTAATCGATCACTGattttttgcatctgaactaGAATAGCACTTTTATTTGCATGTACAGCTAATTTAATGGCTATACAGGAATATACATTGAGATGGAGTAGATGAACTTCAGCCTATGCTATGGGGTccccaattatttattttattattatttttttcattttattttttgcgtGTGTGTAAAATTGTAAGGGGATATTGTACTTGATTGTCATTGTTAATAAACATAGGAAATGAATCTTGA

Function

symbol description
lsm14b Predicted to enable mRNA binding activity. Located in cytoplasm. Is expressed in kidney; liver; oocyte stage I; oocyte stage II; and ovary. Orthologous to human LSM14B (LSM family member 14B).

NR:

description
protein LSM14 homolog B-like isoform X2

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18749 LSM14, RAP55, SCD6; protein LSM14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236244.1 True 1714 mRNA 0.52 9 25631361 25634808

Neighbor

gene id symbol gene type direction distance location
l1camb LOC107661992,LOC107746188,LOC107598812,LOC107568828 coding upstream 21516 25573077 ~ 25609845 (+)
zmp:0000000926 LOC107754864,LOC107661991,LOC107568831,LOC104958731 coding upstream 77528 25517396 ~ 25553833 (+)
LOC122342420 LOC107667978,LOC107563545 coding upstream 849020 24770632 ~ 24782341 (+)
LOC122342991 LOC107685875,LOC107570416,LOC107671223,LOC107749047,LOC107728228,LOC107569032 coding upstream 943381 24679922 ~ 24687980 (+)
LOC122343104 NA coding upstream 959210 24667706 ~ 24672151 (+)
ogfr ogfr,LOC107706812,LOC107690085,LOC107713566,LOC107677637,LOC107598801 coding downstream 69023 25703831 ~ 25709637 (+)
col9a3 col9a3,LOC107713563,LOC107598802,LOC107680173,LOC107719903,LOC107677638,LOC106571930 coding downstream 76854 25711662 ~ 25728651 (+)
trnas-uga NA coding downstream 190303 25825111 ~ 25825192 (+)
trnak-uuu_1 NA coding downstream 191816 25826624 ~ 25826696 (+)
trnas-uga_1 NA coding downstream 192353 25827161 ~ 25827242 (+)
G31228 NA non-coding upstream 315808 25315179 ~ 25315553 (+)
G31226 NA non-coding upstream 316765 25314223 ~ 25314596 (+)
G31223 NA non-coding upstream 642087 24988867 ~ 24989274 (+)
G30877 NA non-coding upstream 916363 24714697 ~ 24714998 (+)
G30812 NA non-coding upstream 1144474 24456022 ~ 24486887 (+)
G31380 NA non-coding downstream 152572 25787380 ~ 25787901 (+)
G31388 NA non-coding downstream 182223 25817031 ~ 25817564 (+)
LOC122342592 NA non-coding downstream 281581 25916389 ~ 25917199 (+)
trnas-aga_27 NA non-coding downstream 298373 25933181 ~ 25933262 (+)
trnas-uga_25 NA non-coding downstream 301350 25936158 ~ 25936240 (+)
LOC122342408 NA other upstream 863809 24743848 ~ 24767552 (+)
G30882 NA other upstream 902914 24721424 ~ 24728447 (+)
LOC122343086 NA other upstream 956949 24672891 ~ 24674412 (+)
LOC122343125 NA other upstream 984760 24639089 ~ 24646601 (+)
LOC122343159 NA other upstream 992707 24636352 ~ 24638654 (+)
LOC122342771 ss18l1,LOC102784650 other downstream 234 25635042 ~ 25688230 (+)
G31298 LOC107569336,LOC107690089,LOC107706811,LOC107090263,LOC107391191,LOC105928559,LOC103357353 other downstream 58994 25693802 ~ 25695381 (+)
G31384 NA other downstream 177823 25812631 ~ 25813625 (+)
LOC122342372 LOC107752513,LOC107665166,LOC107549841,LOC107753705,LOC107575738 other downstream 1662728 27297536 ~ 27371196 (+)
LOC122342494 znf384,LOC107671195,LOC107582054 other downstream 1722004 27356812 ~ 27358163 (+)

Expression


Co-expression Network