rassf3 (rassf3,LOC107711494,LOC107656425,LOC107658927)


Basic Information

Item Value
gene id rassf3
gene name rassf3,LOC107711494,LOC107656425,LOC107658927
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1430618 ~ 1463236 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236281.1
AACATGACACGCGCTGTGCGCACCTGTCTTACCAGCTCGAGCGCTACTCCTACGTCTTAGAGAAGCCTCGGTGAAATCCTCTCCAAGCCTCAGAAATGTCATATCGCAAACGGCCAGGCTTCTCGGACCTCCATgcgtctgtttgtgtgtttcctCCGGCGCGCTTGGTAACGCGGTCACGATGCATCACAGGAAGTACTCACCTCCGCGCCACTGCGACGTCGGCTGGTCGCTAGACCTGCCTCAGCTCAACCGACTACCCACCTTTCGAACGGAAGGAGCCGAGCCGATGGAGAAGAACTCACCCAAAGCCAAATCCAGAATGCGCAATGCCAAGGTGAAAGTGAAGTCTCCACAGAGACCGCGCGTCTCTCCACACCCCGCGCAAAGCGACGCGCTGCCCAAGGCGGCGGAGAACGGAGGACAGCGGTCTAGAAAGAGGGGCTTCAAACCCCCGGATGTCAGGACGATATTCGAACCTTCGGCCAAAGACCCGCGAGTCAAAGAGGAGAAAGGAGAAGGACACACGTTTTGTGAGGACGCGAAGTACGCTTGGTGCGATGTGTGTTGCTCGTATATCTTTAAAGGTGGCTTGACGTGCACAGGTTGTAAATACACATGTCATGCTCAGTGCCGTGACCAGGTGGCGCTAGACTGTCATCAGAACGGATCCATTAATGGCTGCCAGCTCAGCCCTCTCACTCAGGACCATCTTAATAACAATCAGTCGTCACACAGCGAtgtggagaaagaaaaagagctgcGCACTCATCTCACTTATGAGGAGATCAGACAGAAGGTCGAGAAGTACAACACAGAGTCACGTGACCACTTTAAAATGACACTGAATACTAACGGCATGTACACAGGCTTCATCAAGGTGCAGCTGGACCTACGGAGACCCATCACTGTGAGGGGCGGCGGGGCAggaggggtcaaaggtcaggagGCGTTTTACCTTCCGCGTGGCTCCATAAACACCCTGCACATCAGCAGCACCAACACGGTGCGACAGGTGATCGAAGCCCTGCTGAGGAAGTTCACCGTGGCCGACAACCCCGCCAAGTTCGCCTTGTTCAAACGCTTCAGCAGAGAAGACCAAGtgtacACCTGTAAGCTCTCAGAGGAAGAACACCCTCTCTTCCTGCGTCTGGTGGCAGGACCCAGTACAGATGTGCTCAGCTTCGTCCTGAAGGAGCAGCAGACTGGTGAAGTCCTGTGGGACGCCTTCTCCATCCCCGAGTTGCAGAACTTCCTCCGCATCTTGGATAAAGAGGAACAGGACCAGGTTTGTTCGATAACTAAACGCTACACGGCCTACAGAGAGAAACTGCAGGAGGCCATGAGAGCGACGGGTGGCCCGGGATAAAGCCTGCTGATCGTGAAGGAACTGCAGCACTGCTGCCTCTAGTGGTCACTGTGTGTAACGAACACTTTTTAGGGTGTCACTGTGCCAAGCAGACACCGGTCTCAGAAATTCAGAGGAGAGCACTGAGCTCCCAGAATGCACCTCAGGTGCCATATTTACTCATCCACCCTCTTTCACACTTTCGTGTTCTCTGTTCTTTTACCTCTTGTGAACGATGCAAATGTGGAAATCAGAtctggtttttatttaattattggatGCTGTGGTTTGTAcatatttctgtttgttgttttaatttatgtgggtgaattttattttattttttattttactaaaagaGTCTTATTTTATGGCAAATATACTTATCGACCGGAAACAGATGGGACTggggatttattttattttctattaaaaaccAAATGACATAATGTGCCCTACCAAAGATAGTGTTGATGTGCTGTTGACAAAGAGATGACCTGATGGCCACGTGAGACCAAACTGACAGGAAGCGCGTGTTTGTGACAGAAAAGATAGAATATTGTAGGGACTGGAAATGAGGATGAATCGAAGTCATATTCGTTAGTCTCCGAATGGTTggctaaaatgcaaataaaaggcTTTTCAAAAGTAAGCATTCTTAGGTGATGTGCTGGGGTTGGAACCGAACGGATTCAGGAAGTTGGCGAAGGAGCATAGAGGATGTTGGAAAGAATGTGGGAAGTGTCATGCAGCGGTTTCGACTGATGTCAGACGGTTTTTCACAGTAAGCCGCGGCTTGAGTTTAAGCAGAAAACCAGTGAACGGTGCTTTTGCTGTTCGTCTCTCACCAACAACCTTGGAAAACACGTTAGAGGACATCTTCAAGATAAACAGCCGAACAGACAAGCGACGAAGAGTGCTCATTTTGAAGCTACAGCCTAAAAATAGTACATTTAAGCTAGGTCGATTGGTGTATATGTATAATCACACTGATCTGATTTACTGTACCAAAACTTAATTTCACACGCTTTTCTTCATTGCATGGAGATGTAGCCGAAACTGTTACTGTTGTGAGGTACAGTAAGATAAAAGCAGACAGTGCTACTTTGTCTCAGCACAAAAGGTTGAAATTTATGACGGTGTTTGAAATGATACTTGTGTATCAGTAGGtgattttaatatgtatacGCATTCATGTTTCTGTATGCTAGTGCTGCATGACGGTTTTTTCGGATTGGTACTGCAACATTGTTGTCTTATTGCGACACACGCATAGCGAGGTAGCGGAGCCTTGTGGTCAACTGCTGTAACTACATCTCTGCAGTCTTACGCCTCACCTGTGTCAGTCCGttggattattttattttaagatttatttctttattatcgGTTTTATAACCTCTAACCAAAGATCTAGTTAAAATGCATAGTTTAATTTAAGTTTGATGCAAATTGCCTGGTGCAATCAGTTTTTACACCTCAGTAAACGGAGGTTAAATTGTAGTATCTATCTTGTCTGATGGTTTCACCATGGCAACTTTAATTGTAAACACTGGGGTGAATATAAATTAGAGTAATTAGTGTAATTACTGTGTGAATATAACATCACAACAGTCTCGATATATGCAATAGAAGAGGATGTTGCAGGGGAATAAGACCAGtaattttctaaatgttttttgggcactttatgttttaattcagggaattattttgatttattagtCTTCATCAGATGCCTATTGTCTTCCACTGTTTAAAAACGACATTGCATCTTGtggaagcttttttttgtttttttttaattaaagctgtttcagtacttgattttatttttattttttttcataaacaagCGTTTGTTTGTAGAGTAAGACTGTGAATGAATGTTAAACTGTATTCTTGTGTAGTAAAGGGGTGTGGATGTGAGTGAACtgctttagtcatttttaatatacgTGCATGTgttatattaattcatgcatattttatggCTGTTTTAGGACATCACAGGCCAGTGCTGTTGATCTTTAACAGCATAGATAATTTAGAGATCGCTCACAAAGCACTCCGCATTTGCcaaaaaatctcattttgttCCACAGTTGTAAGTTACATGCATATTCTGTCTTTATGAATGATGTACGTTTCATACATAGAAGACACCAGAAGTGGCATACGTCGTTTTTAAGAGTTATGGACTAAATATGCATAGGTAGAATCCAGATGTCATGCATTTTTGACTATGATGGAGGTTTTTTTGATGGTTTGTATTGTTACCCATTGTGGCCTTTGTTGTTAAAGACCTggtttctttaaataaagatgaaatgcTTCTCTA
>XM_043236282.1
CAGTCTATTGAACTCAGTTTAGTTTGAAAGTGTTAGGACGGACTCGACCGGGCGCGTTTTCTGCggcttttaaagtatttatagtgttttaacATTTCGtacgtttattatttatagatatCACGTATTCAGCCAGAAAcgaaaaggtgtttttttggaATTTGCCGATTGTTTCATATGTTAGGGAGCAATAGAGCCGATGGTTAGGGAGCGTCAGTGACTCGTGTTCACGTTTCGTGGCGTTGGCTCAAAAAAGCCGCTTGTCTTTATCACACACTGCTGTTTTTGCGCGCATATAAAACCTGTTTTTGGATGTGTCAGAGTTTCTCTTCAAATGTCGTGGACGAGCACCATGAGTAGTGGATACAGTAGTTTGGAAGAGGATTCAGAGGAATATTTTTTCACTGCCAGAACTTCCCTTTTCAAAAAGCCTTCGGTTAAACCCACGAGCATCAAGGAtgtggagaaagaaaaagagctgcGCACTCATCTCACTTATGAGGAGATCAGACAGAAGGTCGAGAAGTACAACACAGAGTCACGTGACCACTTTAAAATGACACTGAATACTAACGGCATGTACACAGGCTTCATCAAGGTGCAGCTGGACCTACGGAGACCCATCACTGTGAGGGGCGGCGGGGCAggaggggtcaaaggtcaggagGCGTTTTACCTTCCGCGTGGCTCCATAAACACCCTGCACATCAGCAGCACCAACACGGTGCGACAGGTGATCGAAGCCCTGCTGAGGAAGTTCACCGTGGCCGACAACCCCGCCAAGTTCGCCTTGTTCAAACGCTTCAGCAGAGAAGACCAAGtgtacACCTGTAAGCTCTCAGAGGAAGAACACCCTCTCTTCCTGCGTCTGGTGGCAGGACCCAGTACAGATGTGCTCAGCTTCGTCCTGAAGGAGCAGCAGACTGGTGAAGTCCTGTGGGACGCCTTCTCCATCCCCGAGTTGCAGAACTTCCTCCGCATCTTGGATAAAGAGGAACAGGACCAGGTTTGTTCGATAACTAAACGCTACACGGCCTACAGAGAGAAACTGCAGGAGGCCATGAGAGCGACGGGTGGCCCGGGATAAAGCCTGCTGATCGTGAAGGAACTGCAGCACTGCTGCCTCTAGTGGTCACTGTGTGTAACGAACACTTTTTAGGGTGTCACTGTGCCAAGCAGACACCGGTCTCAGAAATTCAGAGGAGAGCACTGAGCTCCCAGAATGCACCTCAGGTGCCATATTTACTCATCCACCCTCTTTCACACTTTCGTGTTCTCTGTTCTTTTACCTCTTGTGAACGATGCAAATGTGGAAATCAGAtctggtttttatttaattattggatGCTGTGGTTTGTAcatatttctgtttgttgttttaatttatgtgggtgaattttattttattttttattttactaaaagaGTCTTATTTTATGGCAAATATACTTATCGACCGGAAACAGATGGGACTggggatttattttattttctattaaaaaccAAATGACATAATGTGCCCTACCAAAGATAGTGTTGATGTGCTGTTGACAAAGAGATGACCTGATGGCCACGTGAGACCAAACTGACAGGAAGCGCGTGTTTGTGACAGAAAAGATAGAATATTGTAGGGACTGGAAATGAGGATGAATCGAAGTCATATTCGTTAGTCTCCGAATGGTTggctaaaatgcaaataaaaggcTTTTCAAAAGTAAGCATTCTTAGGTGATGTGCTGGGGTTGGAACCGAACGGATTCAGGAAGTTGGCGAAGGAGCATAGAGGATGTTGGAAAGAATGTGGGAAGTGTCATGCAGCGGTTTCGACTGATGTCAGACGGTTTTTCACAGTAAGCCGCGGCTTGAGTTTAAGCAGAAAACCAGTGAACGGTGCTTTTGCTGTTCGTCTCTCACCAACAACCTTGGAAAACACGTTAGAGGACATCTTCAAGATAAACAGCCGAACAGACAAGCGACGAAGAGTGCTCATTTTGAAGCTACAGCCTAAAAATAGTACATTTAAGCTAGGTCGATTGGTGTATATGTATAATCACACTGATCTGATTTACTGTACCAAAACTTAATTTCACACGCTTTTCTTCATTGCATGGAGATGTAGCCGAAACTGTTACTGTTGTGAGGTACAGTAAGATAAAAGCAGACAGTGCTACTTTGTCTCAGCACAAAAGGTTGAAATTTATGACGGTGTTTGAAATGATACTTGTGTATCAGTAGGtgattttaatatgtatacGCATTCATGTTTCTGTATGCTAGTGCTGCATGACGGTTTTTTCGGATTGGTACTGCAACATTGTTGTCTTATTGCGACACACGCATAGCGAGGTAGCGGAGCCTTGTGGTCAACTGCTGTAACTACATCTCTGCAGTCTTACGCCTCACCTGTGTCAGTCCGttggattattttattttaagatttatttctttattatcgGTTTTATAACCTCTAACCAAAGATCTAGTTAAAATGCATAGTTTAATTTAAGTTTGATGCAAATTGCCTGGTGCAATCAGTTTTTACACCTCAGTAAACGGAGGTTAAATTGTAGTATCTATCTTGTCTGATGGTTTCACCATGGCAACTTTAATTGTAAACACTGGGGTGAATATAAATTAGAGTAATTAGTGTAATTACTGTGTGAATATAACATCACAACAGTCTCGATATATGCAATAGAAGAGGATGTTGCAGGGGAATAAGACCAGtaattttctaaatgttttttgggcactttatgttttaattcagggaattattttgatttattagtCTTCATCAGATGCCTATTGTCTTCCACTGTTTAAAAACGACATTGCATCTTGtggaagcttttttttgtttttttttaattaaagctgtttcagtacttgattttatttttattttttttcataaacaagCGTTTGTTTGTAGAGTAAGACTGTGAATGAATGTTAAACTGTATTCTTGTGTAGTAAAGGGGTGTGGATGTGAGTGAACtgctttagtcatttttaatatacgTGCATGTgttatattaattcatgcatattttatggCTGTTTTAGGACATCACAGGCCAGTGCTGTTGATCTTTAACAGCATAGATAATTTAGAGATCGCTCACAAAGCACTCCGCATTTGCcaaaaaatctcattttgttCCACAGTTGTAAGTTACATGCATATTCTGTCTTTATGAATGATGTACGTTTCATACATAGAAGACACCAGAAGTGGCATACGTCGTTTTTAAGAGTTATGGACTAAATATGCATAGGTAGAATCCAGATGTCATGCATTTTTGACTATGATGGAGGTTTTTTTGATGGTTTGTATTGTTACCCATTGTGGCCTTTGTTGTTAAAGACCTggtttctttaaataaagatgaaatgcTTCTCTA

Function

symbol description
rassf3 Predicted to be involved in signal transduction. Predicted to act upstream of or within regulation of apoptotic process. Predicted to be active in cytoplasm. Orthologous to human RASSF3 (Ras association domain family member 3).

NR:

description
PREDICTED: ras association domain-containing protein 3 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236281.1 True 3689 mRNA 0.44 6 1430618 1463236
XM_043236282.1 False 3407 mRNA 0.41 5 1446208 1463236

Neighbor

gene id symbol gene type direction distance location
LOC122342464 LOC107658928 coding upstream 1192 1424627 ~ 1429426 (+)
dgki dgki,LOC107658929,LOC107656386 coding upstream 4802 1386513 ~ 1425816 (+)
creb3l2 creb3l2,LOC107656406,LOC107579521,LOC107711498,LOC107583953,LOC107726033,LOC107658932 coding upstream 44795 1369392 ~ 1385823 (+)
ssbp1 ssbp1,LOC107656434,LOC107658933,LOC107583954 coding upstream 61873 1366719 ~ 1368745 (+)
c4h12orf56 LOC107583952,LOC107656394,LOC107726068,LOC107711499,LOC107658934,LOC107581038 coding upstream 64548 1352403 ~ 1366070 (+)
zgc:194209 zgc:194209,LOC107584030,LOC107658744,LOC107725912 coding downstream 348 1463584 ~ 1468477 (+)
tbc1d30 tbc1d30,LOC107658925,LOC107725910,LOC107584031 coding downstream 10517 1473753 ~ 1486677 (+)
ntf3 LOC107658772,LOC107584056,LOC107725959,LOC107656423,LOC107579734,LOC107711475 coding downstream 40808 1504044 ~ 1519640 (+)
LOC122342591 LOC107579910,LOC107711477,LOC107656438,LOC107584057,LOC107658998,LOC107725909 coding downstream 58384 1521620 ~ 1526208 (+)
cd9b LOC107658922,LOC107725937,LOC107583958,LOC107656430,LOC107711492 coding downstream 105028 1568264 ~ 1575414 (+)
G24925 NA non-coding upstream 143545 1286612 ~ 1287073 (+)
LOC122342413 NA non-coding upstream 303238 1112895 ~ 1127380 (+)
G24811 NA non-coding upstream 497507 864840 ~ 933111 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 779025 649509 ~ 651593 (+)
G24758 NA non-coding upstream 805393 623251 ~ 625225 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding downstream 93156 1556392 ~ 1557778 (+)
G25071 NA non-coding downstream 225742 1688978 ~ 1693389 (+)
G25030 NA non-coding downstream 325395 1788631 ~ 1789276 (+)
G25086 NA non-coding downstream 367442 1830678 ~ 1830968 (+)
LOC122342405 NA non-coding downstream 436660 1899896 ~ 1901886 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 98775 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 139394 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 181449 1245578 ~ 1249169 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 765088 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 991266 434343 ~ 439352 (+)
LOC122343488 NA other downstream 207276 1670512 ~ 1672959 (+)
LOC122342451 NA other downstream 321001 1784237 ~ 1788096 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 531004 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1636501 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1656279 3119515 ~ 3306758 (+)

Expression


Co-expression Network