LOC122342464 (LOC107658928)


Basic Information

Item Value
gene id LOC122342464
gene name LOC107658928
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1424627 ~ 1429426 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236283.1
TTTAGAGTCGGGAAGATTTTTACCCACAGAAAGTGGCTGTCTGCACTGCTCCGAGCGCCCGCTCGCACTCGCAGAGAAAGAACGAGAGAGCGTGAGAGGAGAAGGGGAAGGGATGGAGAGCGCCTCGGGCTGAGAGAGTCCTCGGGATCGTGTCTAGCTGTTGTTTTTCCACTGATGTCGCTGTGGggttttagcatttatttattgctcttATTTATTGTAACTATTTATTCAGAGACGGATTGGGTTCGGTTGCATCGCAGGCGTATAAACATGCCAGAGACGGAGGCTGTTATGCGGCGGATGTTGTGTGccaaagacacacagagaggaaAAACATAGAGGAGGATCTTCTTCCGGGAATTTTTTACCATCGGACAGAACCGTGGCGGAGATTTAAAACTCAAAACTACTGACTTTTcacgtttttgtttgtgtgccgTTACAGTGGCGTGATTGTGAAATTATCTTACCATGACGAGACAAGATCTGAGCCATATTCAATGCAATATGAATGGAtgacatttgtgcatttatctatttaatattacattacattaatgtttTGAGACGAGCAAAGGAATcggatgtgttttttttttttcccattgttGGCAGCTGATTGGTTTCTAAAATGCCAAGTCGGTTGCGTTTGACAGATGAATGACTAAACCAAAAGAATGCCGGCGAGAGTTAAGTGTGGCGTTTCAAACATATGCTTAGTCCATGTCACATCACTTATGTGGGGAAATGCCCAGCGACGGGTCTGCATGAAAATCCGGATCACGCTGAGCCTTGGTGAGATCCATTTACATACGAGTGATCTGCTGTGTTATCTagtatcattttaaagcattattgtGCATGGAAATTTTGTTACCTCTCTGGATGTTTCTACCCCTCAGTGGTTATGTAATGAAATGgcattatttctttctctctatctctttttttttttttttaagttatatgaaaaatatgaaattgtaCAATggttgtattttcttttttttatcctctaAAAGATGGGACTACttgaatgttttagttttttttctaatttctaaatatctattttagGTGTGTATGAGGTCAGAGTAGATGTGGAGATGGGGAGATGTGGAGATATCACGTTGCACGAGCTCAAAACTGGGAATGTTTCTCATTAAAAGGCAGTTGGATGGAAAGCaccagtgttgtgtgtgtgtgtgtgttttgtggacAGTCCTAGATTACCCTAAAATAATACCTAAAAGAAACCGCTCCAATACATCTTGTCATATTACCGTTTGGGCTCTTTTCTGATGAACAACAATGAATCAATGGGACGGATGGGAAGTTTCTGTTGAATCATTTGACTCTGAGTCACCTCTAACTTACTCGGTGATGACGTTTTGTTTTGGCCCCGCCCCCAAGCACATAAATACTGTACCGAAGCTTCGCTTTGCTCCGAGAAAACCCCGGACATTGAACGCGGAGTTATTATCTGCATATCTGAGCAGGGATCAACAGCACAGCAACGGTGATGCCCGGACGTTTGAGACGGACAGTCTGGAGTTCAAACTCTTGATGGCATACACCCGTAAGAGACGTCCCACCGAAGCCCTCCCGTCTTCACCACAGCCGGATGAAGATCGCAGCAAACCAAAAAGAAAGGGAAGAAAGCCCAGACTGTCTTTCCTCATAAAGTGTATTAAACCACAGACAAATGAATCACCTGTACAGCAGCCAGCGACgctgtcttATTCAGATGATAAGAAAGCGGATGATCTGGAGGACATGGTCTGTGATCTGACAGAGATATCAGACTCTGTGCAGTTTACTCCCTGTGATATAGAACCAGACTCTGATGATGTTGTGGAAAAGCTGGTTGAGCTTCTCAGAGAACATGGGGATAAACTGGACAAGAAGATTAAAGAAGACAAGGTGTTACACGAGAAGCTGCAGTCCTCTCTCACGTACGGCTTCTTCAAGAAAGTGATGGAATCTCTCTGTGGAAGTGTTTCTCCTGATGTGCCTCCAGAGCAGAAAGACCAGAAAGTGAGTGTGGCTCTGGTCTGTGAGGCCACCAGTCAGCTTGTAGGCGTCCACTACCATCCCATGACCTACGTGCTGGGTTTAGGTGCTCAGTATCTGCAGGAAAAATACTCCACGTGGATTAACAGAAACGTACAAGTAGGCATTGGAAAGGTCAGCGACGAATCCAAAGAGGAAGTCCAGTGAGCGGAAGAGCTGCTCTCATCACATCTTTCTCAGGGGCACAGGCACTTTATTAACCCGAAAAAAGTGATTTTCAGTGAACCAAAGGGGATGTAGCTCGCTTTTGTCCTCCACTACACGTTCATGACATccaagagagaaaaagaggtaGTTAATAGTGCCAAGCGTATGTACTCGTACCTCACTGGAAGTGCTACGGAAACTGCCTGGCAGCTGCCTGCAAAAACCTTGAAAACCAGCATTATGTTTAGCTCAACTATTTTTGCAATTCAAAGAGGTACGATTGTACTTTTGTCGTgaaatgaacatatttattttctttagccAGTTGTTGTAGTATttaaaagaatggaaaaaaaaatcttattgatGAATTTTTGCGCTTTAATGTTGGAGAAATAAACTAACTGTGAAAATTTCA
>XM_043236284.1
AGTCGGGAAGATTTTTACCCACAGAAAGTGGCTGTCTGCACTGCTCCGAGCGCCCGCTCGCACTCGCAGAGAAAGAACGAGAGAGCGTGAGAGGAGAAGGGGAAGGGATGGAGAGCGCCTCGGGCTGAGAGAGTCCTCGGGATCGTGTCTAGCTGTTGTTTTTCCACTGATGTCGCTGTGGggttttagcatttatttattgctcttATTTATTGTAACTATTTATTCAGAGACGGATTGGGTTCGGTTGCATCGCAGGCGTATAAACATGCCAGAGACGGAGGCTGTTATGCGGCGGATGTTGTGTGccaaagacacacagagaggaaAAACATAGAGGAGGATCTTCTTCCGGGAATTTTTTACCATCGGACAGAACCGTGGCGGAGATTTAAAACTCAAAACTACTGACTTTTcacgtttttgtttgtgtgccgTTACAGTGGCGTGATTGTGAAATTATCTTACCATGACGAGACAAGATCTGAGCCATATTCAATGCAATATGAATGGAtgacatttgtgcatttatctatttaatattacattacattaatgtttTGAGACGAGCAAAGGAATcggatgtgttttttttttttcccattgttGGCAGCTGATTGGTTTCTAAAATGCCAAGTCGGTTGCGTTTGACAGATGAATGACTAAACCAAAAGAATGCCGGCGAGAGTTAAGTGTGGCGTTTCAAACATATGCTTAGTCCATGTCACATCACTTATGTGGGGAAATGCCCAGCGACGGGTCTGCATGAAAATCCGGATCACGCTGAGCCTTGGTGAGATCCATTTACATACGAGTGATCTGCTGTGTTATCTagtatcattttaaagcattattgtGCATGGAAATTTTGTTACCTCTCTGGATGTTTCTACCCCTCAGTGGTTATGTAATGAAATGgcattatttctttctctctatctctttttttttttttttaagttatatgaaaaatatgaaattgtaCAATggttgtattttcttttttttatcctctaAAAGATGGGACTACttgaatgttttagttttttttctaatttctaaatatctattttagGTGTGTATGAGGTCAGAGTAGATGTGGAGATGGGGAGATGTGGAGATATCACGTTGCACGAGCTCAAAACTGGGAATGTTTCTCATTAAAAGGCAGTTGGATGGAAAGCaccagtgttgtgtgtgtgtgtgtgttttgtggacAGTCCTAGATTACCCTAAAATAATACCTAAAAGAAACCGCTCCAATACATCTTGTCATATTACCGTTTGGGCTCTTTTCTGATGAACAACAATGAATCAATGGGACGGATGGGAAGTTTCTGTTGAATCATTTGACTCTGAGTCACCTCTAACTTACTCGGTGATGACGTTTTGTTTTGGCCCCGCCCCCAAGCACATAAATACTGTACCGAAGCTTCGCTTTGCTCCGAGAAAACCCCGGACATTGAACGCGGAGTTATTATCTGCATATCTGAGCAGGGATCAACAGCACAGCAACGGTGATGCCCGGACGTTTGAGACGGACAGTCTGGAGTTCAAACTCTTGATGGCATACACCCGTAAGAGACGTCCCACCGAAGCCCTCCCGTCTTCACCACAGCCGGATGAAGATCGCAGCAAACCAAAAAGAAAGGGAAGAAAGCCCAGACTGTCTTTCCTCATAAAGTGTATTAAACCACAGACAAATGAATCACCTGTACAGCAGCCAGCGACgctgtcttATTCAGATGATAAGAAAGCGGATGATCTGGAGGACATGGTCTGTGATCTGACAGAGATATCAGACTCTGTGCAGTTTACTCCCTGTGATATAGAACCAGACTCTGATGATGTTGTGGAAAAGCTGGTTGAGCTTCTCAGAGAACATGGGGATAAACTGGACAAGAAGATTAAAGAAGACAAGGTGTTACACGAGAAGCTGCAGTCCTCTCTCACGTACGGCTTCTTCAAGAAAGTGATGGAATCTCTCTGTGGAAGTGTTTCTCCTGATGTGCCTCCAGAGCAGAAAGACCAGAAAGTGAGTGTGGCTCTGGTCTGTGAGGCCACCAGTCAGCTTGTAGGCGTCCACTACCATCCCATGACCTACGTGCTGGGTTTAGGTGCTCAGTATCTGCAGGAAAAATACTCCACGTGGATTAACAGAAACGTACAAGGAAAGGTCAGCGACGAATCCAAAGAGGAAGTCCAGTGAGCGGAAGAGCTGCTCTCATCACATCTTTCTCAGGGGCACAGGCACTTTATTAACCCGAAAAAAGTGATTTTCAGTGAACCAAAGGGGATGTAGCTCGCTTTTGTCCTCCACTACACGTTCATGACATccaagagagaaaaagaggtaGTTAATAGTGCCAAGCGTATGTACTCGTACCTCACTGGAAGTGCTACGGAAACTGCCTGGCAGCTGCCTGCAAAAACCTTGAAAACCAGCATTATGTTTAGCTCAACTATTTTTGCAATTCAAAGAGGTACGATTGTACTTTTGTCGTgaaatgaacatatttattttctttagccAGTTGTTGTAGTATttaaaagaatggaaaaaaaaatcttattgatGAATTTTTGCGCTTTAATGTTGGAGAAATAAACTAACTGTGAAAATTTCA
>XM_043236285.1
GGGAAGTTTCTGTTGAATCATTTGACTCTGAGTCACCTCTAACTTACTCGGTGATGACGTTTTGTTTTGGCCCCGCCCCCAAGCACATAAATACTGTACCGAAGCTTCGCTTTGCTCCGAGAAAACCCCGGACATTGAACGCGGAGTTATGGATCAACAGCACAGCAACGGTGATGCCCGGACGTTTGAGACGGACAGTCTGGAGTTCAAACTCTTGATGGCATACACCCGTAAGAGACGTCCCACCGAAGCCCTCCCGTCTTCACCACAGCCGGATGAAGATCGCAGCAAACCAAAAAGAAAGGGAAGAAAGCCCAGACTGTCTTTCCTCATAAAGTGTATTAAACCACAGACAAATGAATCACCTGTACAGCAGCCAGCGACgctgtcttATTCAGATGATAAGAAAGCGGATGATCTGGAGGACATGGTCTGTGATCTGACAGAGATATCAGACTCTGTGCAGTTTACTCCCTGTGATATAGAACCAGACTCTGATGATGTTGTGGAAAAGCTGGTTGAGCTTCTCAGAGAACATGGGGATAAACTGGACAAGAAGATTAAAGAAGACAAGGTGTTACACGAGAAGCTGCAGTCCTCTCTCACGTACGGCTTCTTCAAGAAAGTGATGGAATCTCTCTGTGGAAGTGTTTCTCCTGATGTGCCTCCAGAGCAGAAAGACCAGAAAGTGAGTGTGGCTCTGGTCTGTGAGGCCACCAGTCAGCTTGTAGGCGTCCACTACCATCCCATGACCTACGTGCTGGGTTTAGGTGCTCAGTATCTGCAGGAAAAATACTCCACGTGGATTAACAGAAACGTACAAGTAGGCATTGGAAAGGTCAGCGACGAATCCAAAGAGGAAGTCCAGTGAGCGGAAGAGCTGCTCTCATCACATCTTTCTCAGGGGCACAGGCACTTTATTAACCCGAAAAAAGTGATTTTCAGTGAACCAAAGGGGATGTAGCTCGCTTTTGTCCTCCACTACACGTTCATGACATccaagagagaaaaagaggtaGTTAATAGTGCCAAGCGTATGTACTCGTACCTCACTGGAAGTGCTACGGAAACTGCCTGGCAGCTGCCTGCAAAAACCTTGAAAACCAGCATTATGTTTAGCTCAACTATTTTTGCAATTCAAAGAGGTACGATTGTACTTTTGTCGTgaaatgaacatatttattttctttagccAGTTGTTGTAGTATttaaaagaatggaaaaaaaaatcttattgatGAATTTTTGCGCTTTAATGTTGGAGAAATAAACTAACTGTGAAAATTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236283.1 True 2641 mRNA 0.43 6 1424627 1429426
XM_043236284.1 False 2627 mRNA 0.43 6 1424632 1429426
XM_043236285.1 False 1289 mRNA 0.45 6 1425960 1429426

Neighbor

gene id symbol gene type direction distance location
creb3l2 creb3l2,LOC107656406,LOC107579521,LOC107711498,LOC107583953,LOC107726033,LOC107658932 coding upstream 38804 1369392 ~ 1385823 (+)
ssbp1 ssbp1,LOC107656434,LOC107658933,LOC107583954 coding upstream 55882 1366719 ~ 1368745 (+)
c4h12orf56 LOC107583952,LOC107656394,LOC107726068,LOC107711499,LOC107658934,LOC107581038 coding upstream 58557 1352403 ~ 1366070 (+)
zgc:162331 zgc:162331,LOC107584055,LOC107658936,LOC107725957,LOC107711500,LOC107656412,LOC107579629 coding upstream 72954 1346185 ~ 1351673 (+)
waslb wasl,LOC107725914,LOC107658745,LOC107583945,LOC107656407 coding upstream 152539 1257733 ~ 1272088 (+)
rassf3 rassf3,LOC107711494,LOC107656425,LOC107658927 coding downstream 1192 1430618 ~ 1463236 (+)
zgc:194209 zgc:194209,LOC107584030,LOC107658744,LOC107725912 coding downstream 34158 1463584 ~ 1468477 (+)
tbc1d30 tbc1d30,LOC107658925,LOC107725910,LOC107584031 coding downstream 44327 1473753 ~ 1486677 (+)
ntf3 LOC107658772,LOC107584056,LOC107725959,LOC107656423,LOC107579734,LOC107711475 coding downstream 74618 1504044 ~ 1519640 (+)
LOC122342591 LOC107579910,LOC107711477,LOC107656438,LOC107584057,LOC107658998,LOC107725909 coding downstream 92194 1521620 ~ 1526208 (+)
G24925 NA non-coding upstream 137554 1286612 ~ 1287073 (+)
LOC122342413 NA non-coding upstream 297247 1112895 ~ 1127380 (+)
G24811 NA non-coding upstream 491516 864840 ~ 933111 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 773034 649509 ~ 651593 (+)
G24758 NA non-coding upstream 799402 623251 ~ 625225 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding downstream 126966 1556392 ~ 1557778 (+)
G25071 NA non-coding downstream 259552 1688978 ~ 1693389 (+)
G25030 NA non-coding downstream 359205 1788631 ~ 1789276 (+)
G25086 NA non-coding downstream 401252 1830678 ~ 1830968 (+)
LOC122342405 NA non-coding downstream 470470 1899896 ~ 1901886 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 92784 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 133403 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 175458 1245578 ~ 1249169 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 759097 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 985275 434343 ~ 439352 (+)
LOC122343488 NA other downstream 241086 1670512 ~ 1672959 (+)
LOC122342451 NA other downstream 354811 1784237 ~ 1788096 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 564814 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1670311 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1690089 3119515 ~ 3306758 (+)

Expression


Co-expression Network