cry1a (cry1aa,LOC107560722,LOC107593424,LOC107655612,LOC107694298,LOC107757210)


Basic Information

Item Value
gene id cry1a
gene name cry1aa,LOC107560722,LOC107593424,LOC107655612,LOC107694298,LOC107757210
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5704481 ~ 5715620 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236303.1
GAGTTTAGTCTACCGATTGAATTGCATGGCTGAAAGTCTATGGAACCTTCTCCGTGGGAAAATATTTACAAGTGGACACAACGTTGGGGGAAACAACCGAAACACGCCGAATGCCTAATATGAGATCGCACTTCATGCGGGACATCGCTTTATTTTGCGACAGCTGCCAGTAACGCGGTCACGACGGGCTCGGTccaacattaatatttacataatcgCTCTGATTTAGGGCTCGCACGTCTCCGAATCGACTTCATCTGGAGGACCGCGCGCGCCGAGAGCCAAGTCGACTCGCAGACCAACTTGCTACACAGGCGAGATctaaaatatgtacagtattCTTGATTATTTTGGATAATTCGGAAAAAACAAGTTATACAACAGGGAAGTGCACTTTGCGTCGCGTCCTGGTCCTAAAGCCGGTCGTGTATTCGGCAGTTGCGCGGATAGCCAGCGCGCGCTCCAATGCTTCAACTGTGGTCGTGTTCCAAATCATCAGACATGAAGATGGAAAGTGTTTTGTTAGAGCAAggctaataatttttttttgccggATATAAAGCAGAATCAATCGAACGCGCGTGCATTAGTGACTTTTATTAGACAACTTGTCGTTTTTTAAGCTTTTGAAAGCAGTTTCTTCTTTGAAGAGCGTAAGTAAGGCAACGCGGAGGAGGTCTGTATCGAAGCACCCCAGCATACTACAAACGGTTGAAGGGACTTAAGTGGAGTAATGGTGGTAAATACGGTCCACTGGTTCAGGAAGGGCTTGCGGCTCCACGACAATCCTTCACTCAGAGACTCTATCCAGGGAGCGCACACTGTCCGCTGTGTGTACATCCTCGACCCCTGGTTCGCCGGATCCTCCAACGTTGGGATCAGCAGGTGGAGGTTTTTACTGCAGTGTTTGGAAGACTTGGACGCCAGCCTCCGCAAACTAAACTCACGACTCTTCGTTATCCGCGGCCAACCCACTGATGTCTTCCCCAGGCTCTTTAAGGAGTGGAACATTACTCGTCTCTCCTATGAGTACGACTCAGAGCCATTTGGAAAGGAAAGAGATGCGGCCATTAAGAAGCTGGCCAATGAGGCAGGCGTGGAGGTGATAGTTCGCATCTCTCACACGCTCTACGATCTGGACAAGATAATCGAGCTTAATGGAGGCCAGTCTCCTCTCACGTACAAGCGCTTCCAGACCCTCATCAGCAGGATGGAGGCAGTGGAGACCCCGGCAGAAACAATCACAGCAGAAGTCATGGGGGCGTGCACTACTCCGGTTTCTGAAGACCACGATGAGAAGTTTGGTGTTCCTTCTTTGGAAGAGCTTGGCTTTGACACAGAAGGTCTATCCTCAGCTGTGTGGCCTGGAGGAGAAACAGAGGCCCTCACTCGTCTGGAGAGGCATCTGGAGAGGAAGGCTTGGGTGGCCAACTTTGAGCGTCCAAGAATGAATGCCAATTCGCTGTTGGCCAGTCCCACTGGCCTCAGTCCATATTTAAGATTCGGCTGCCTCTCCTGTCGCCTCTTCTACTTCAAACTCACAGACCTCTACAGAAAGGTCAAAAAGAACAGCTCACCTCCTCTGTCCCTTTATGGCCAATTACTGTGGCGTGAGTTCTTCTACACGACTGCCACCAACAACCCCCGCTTTGACAAGATGGAAGGCAATCCTATTTGCGTCCAGATCCCGTGGGACAAAAACCCAGAGGCTCTGGCCAAGTGGGCTGAGGGCAGGACAGGTTTCCCCTGGATCGATGCCATCATGACCCAACTGAGACAAGAGGGCTGGATCCATCATCTGGCCCGACACGCAGTCGCTTGTTTCCTCACCCGCGGAGACCTGTGGATCAGCTGGGAGGAGGGCATGAAAGTCTTTGAGGAGCTGTTGCTGGATGCAGACTGGAGCGTGAATGCAGGAAGCTGGATGTGGCTGTCCTGTAGCTCCTTCTTCCAGCAGTTCTTCCACTGCTACTGTCCCGTGGGCTTCGGCCGGCGGACAGACCCCAACGGAGACTACATACGGCGGTATTTGCCAGTGTTAAGGGGTTTCCCAGCCAAGTATATCTACGACCCCTGGAATGCTCCTGAAAGCGTCCAGAAAGCAGCCAAATGTATAATTGGTGTACACTACCCCAAACCCATGGTGCATCACGCTGAGGCAAGCCGCCTCAACATAGAGCGTATGAAACAGATCTACCAGCAACTGTCCTGCTACCGTGGTCTTGGACTGCTGGCAATGGTGCCGTCCAACCCTAATGGAAATGGTGAGAATTCCACTACCTTAAAGGGAGATGCAATCAAGGAAGTCACTGCACCTTCAGgcTATCAGATGCCGCCCACTTCTCAAGGTGAATGGCACGGCAGGACGATGGTTTACACACAAGGAGACCACCAGACAAGCAGCAGCATGCCACCGCAAGGTTTTGCGGGCAACACTAGTGGCACAATGTGCTACAGGCAAGAATCACAGCAGATATCTGGACCTGCCGTACAGCCAGGACGTGGGCTACACAGCAGCAGcatccagacctctggaaaacGACACAGCGAGGAGGCTGGTCCTGTCACAGGCCCAAAGGTCCAGAGGCAGAGCAGCTCTTAAACATCAGaAACGGTTGATGCAAAGTGGTCTGCACGACTTCGCAGAggcctgatttttttttgtttgcaccTTTTTCCGAGTtgttatgttttgcatttttacaaagGAAACCAAAATCCCACTGACGGGAGCGATTGAAGGGAGTGCATGATTCTCTCTATAAGCACATCAACACATAGCACTTCGAAACAATCAGACTGTACATTATCACAGGGACTTCACCCAAGCGGTCACCAACATCCTGACAACATTGGAATTACGTTGCGGCTCTGTGATCTGCACAGCTGCAATGTTCTGTCAACGTTGCGTTCATGTTTGTACTGTTTGGGACtaaatttttatgtatataaggATTTGATGAATACTcacatacaaaatgtaaatatttaatattgtatgtgCTTTCTCTATTTCATGTAGTCATAGACCcattgatatatttttgatataaagaATTATTGTGGATCAATTTTACTCTCTtctttatgaaaacattttaaagcatttgtagACTGTCCATGCAGTACACTACTAAGCCTCTCCTTGGGCTGCTTGCTTGCACTACGTTTTTCTTGATTTCTCCTTTGCTTGcctgttctctctctgtctctaccACAAATGTTTGTGATCGCTCTCTCTTTTCAGATTGACATCTGTCTTGTACACCTTCTCAGTCCCTGTTTACTCCTCCTTTCTATCTGGGTGTCTTTCCATTGCTGTAAACTGTATGAAAACTATAATTCACCGCCGTGTTTCTCATCCTCTCACAATGTGCTTgtttaataaagtgtaaatgtaaa

Function

NR:

description
PREDICTED: cryptochrome-1-like

GO:

id name namespace
GO:0009649 entrainment of circadian clock biological_process
GO:0042542 response to hydrogen peroxide biological_process
GO:0009416 response to light stimulus biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003913 DNA photolyase activity molecular_function
GO:0005515 protein binding molecular_function

KEGG:

id description
K02295 CRY; cryptochrome

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236303.1 True 3402 mRNA 0.49 14 5704481 5715620

Neighbor

gene id symbol gene type direction distance location
mkln1 mkln1,LOC107754054,LOC107655615,LOC107757245,LOC107560731,LOC107587826,LOC107694304 coding upstream 164362 5521753 ~ 5540119 (+)
asb13a.2 asb13a.2,LOC107560715,LOC107754063,LOC107655562,LOC103022068,LOC108436004,LOC108280001 coding upstream 286494 5412647 ~ 5417987 (+)
asb13a.1 asb13a.1,LOC107754064,LOC107560716,LOC107655563,LOC107694252,LOC108436003 coding upstream 291917 5410196 ~ 5412564 (+)
gdi2 gdi2,LOC107754057,LOC107560733,LOC107757239,LOC107585127,LOC107694307 coding upstream 294439 5401464 ~ 5410042 (+)
ankrd16 ankrd16,LOC107754065,LOC107594131,LOC107694253,LOC107560709 coding upstream 303568 5398333 ~ 5400913 (+)
tnnt2c tnnt2c,LOC107560724,LOC107655611,LOC107725585 coding downstream 3389 5719009 ~ 5720254 (+)
LOC122342429 si:dkey-47k20.1,LOC107569154,LOC107676314 coding downstream 157039 5872659 ~ 5876129 (+)
LOC122342428 si:dkey-47k20.2,LOC107676311,LOC107569153,LOC107741377,LOC107697634,LOC107741381,LOC107557170,LOC107569155,LOC107569150,LOC107748086 coding downstream 161914 5877534 ~ 5881277 (+)
tmem178b tmem178b,LOC107725619,LOC107694293 coding downstream 226206 5941826 ~ 6015837 (+)
mkrn1 mkrn1,LOC107757257,LOC107549191,LOC107694290,LOC107725576,LOC107655605 coding downstream 329263 6044883 ~ 6054197 (+)
G26342 NA non-coding upstream 130762 5573503 ~ 5573719 (+)
G26337 NA non-coding upstream 133273 5563371 ~ 5571208 (+)
G26340 NA non-coding upstream 150700 5553386 ~ 5553781 (+)
G26334 NA non-coding upstream 184625 5519474 ~ 5519856 (+)
G26333 NA non-coding upstream 185324 5518933 ~ 5519157 (+)
G26387 NA non-coding downstream 11446 5727066 ~ 5727271 (+)
G26388 NA non-coding downstream 12585 5728205 ~ 5746494 (+)
LOC122342507 NA non-coding downstream 12688 5728308 ~ 5730572 (+)
LOC122342489 NA non-coding downstream 18972 5734592 ~ 5736504 (+)
LOC122342716 NA non-coding downstream 189034 5904654 ~ 5913161 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other upstream 306595 5354332 ~ 5397886 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other upstream 759601 4929471 ~ 4944880 (+)
G25958 NA other upstream 1075582 4550163 ~ 4628899 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other upstream 1469237 4232908 ~ 4235244 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other upstream 1473389 4229629 ~ 4231092 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other downstream 66324 5781944 ~ 5862313 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other downstream 146987 5862607 ~ 5898827 (+)
vhll NA other downstream 672923 6388543 ~ 6390927 (+)
G26692 NA other downstream 1472320 7187940 ~ 7227437 (+)
akr1b1.1 akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878 other downstream 1698316 7413936 ~ 7463373 (+)

Expression


Co-expression Network