LOC122342485 (osgep,LOC107656414,LOC107583976,LOC107579596,LOC107658895)



Basic Information


Item Value
gene id LOC122342485
gene name osgep,LOC107656414,LOC107583976,LOC107579596,LOC107658895
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1622079 ~ 1624891 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043236316.1
TGTTATGGTCCTACAACCAGCAGCGAGTGAGCGAAACCATGACTGTGGTGATTGGGTTTGAAGGCAGTGCTAATAAGATTGGTGTGGGTATCATCAGAGATGGGGAAGTTCTGTCAAACCCCAGGCGCACTTACATCACACCACCTGGCCAAGGGTTCCTGCCCGGTGAGACGGCCAAACACCATCGTAGCGTGATTCTCACTGTGCTCCAGGAGGCATTAGATGAAGCAGGGATGAAAGCAGAAGATATTGACTGTGTGGCATACACTAAAGGGCCTGGAATGGGGGCTCCTCTGGTGACGGTGGCAATTGTGGCCAGGACAGTTGCCCAGTTGTGGGGGAAGCCATTATTGGGGGTAAATCACTGTATCGGGCACATAGAAATGGGCCGTTTGATCACCAATGCCCAAAACCCCACAGTTCTGTATGTGAGTGGAGGAAACACTCAAGTTATTGCATATTCTGAACACCGTTACAGAATATTTGGAGAAACTATTGATATTGCTGTGGGAAACTGCCTTGATCGGTTCGCCAGGGTCATCAAgATATCAAATGATCCCAGTCCTGGTTACAACATTGAACAAATGGCAAAGAAGGGTACCAAGTACATAGAGCTACCATATACAGTGAAGGGTATGGATGTGTCATTTTCTGGGATTTTGTCCTATATAGAGGATGCCGCTCACAAACTGTTGAGTACAGGTCAATGTAAGCCTGAGGATTTGTGTTTCTCCTTACAAGAGACCCTGTTTGCCATGCTTGTGGAGATCACAGAAAGAGCCATGGCTCACTGCGGCTCTCAGGAGGTTCTAATCGTTGGTGGAGTTGGTTGCAACCTGCGACTGCAGGAGATGATGGGGGTCATGTGTAAGGAGAGAGGTGCTCTGCTTTTTGCCACAGATGAGAGGTTTTGTATAGACAATGGGGCAATGATTGCACAGGCTGGATGGGAGATGTTCCGCTCGGGGCACGTCACAGAGCTGCCAGACTCCTGGATTACACAAAGGTACAGAACAGATGAAGTGGAGGTCACATGGCGGGACTGATGTTTGGATCTGGTTCTTTAAGAATTTCAGTGGCACTAAAGTCAAGTTGTACTCATTCATTATCATGCAATATAACCTTTCACATCAGggagaaaagtattttttttttatctcagtgAATGAAgaattgtgtaatatttttgtaaaaacactgaataaaaaacacttattGACCTGAAGCTTCAAA

Function


symbol description
osgep Predicted to enable N(6)-L-threonylcarbamoyladenine synthase activity and metal ion binding activity. Predicted to be involved in tRNA threonylcarbamoyladenosine modification. Predicted to act upstream of or within tRNA processing. Predicted to be located in nucleus. Predicted to be part of EKC/KEOPS complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 3. Orthologous to human OSGEP (O-sialoglycoprotein endopeptidase).

NR:

description
PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase

GO: NA

KEGG:

id description
K01409 KAE1, tsaD, QRI7; N6-L-threonylcarbamoyladenine synthase

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043236316.1 True 1233 mRNA 0.46 12 1622079 1624891

Neighbor


gene id symbol gene type direction distance location
si:dkey-14d8.1 si:dkey-14d8.1,LOC107658880,LOC107725921,LOC107579331,LOC107583961,LOC107656391 coding upstream 12937 1604789 ~ 1609142 (+)
cd9b LOC107658922,LOC107725937,LOC107583958,LOC107656430,LOC107711492 coding upstream 46665 1568264 ~ 1575414 (+)
LOC122342591 LOC107579910,LOC107711477,LOC107656438,LOC107584057,LOC107658998,LOC107725909 coding upstream 95871 1521620 ~ 1526208 (+)
ntf3 LOC107658772,LOC107584056,LOC107725959,LOC107656423,LOC107579734,LOC107711475 coding upstream 102439 1504044 ~ 1519640 (+)
tbc1d30 tbc1d30,LOC107658925,LOC107725910,LOC107584031 coding upstream 135402 1473753 ~ 1486677 (+)
si:ch211-214j24.15 LOC107658740,LOC107725906,LOC107584035 coding downstream 4702 1629593 ~ 1634607 (+)
snap91b si:ch211-214j24.9,LOC107583964,LOC107725923,LOC107658883,LOC107711483,LOC107656397,LOC107579412,LOC108443062 coding downstream 10286 1635177 ~ 1653759 (+)
atp6v1e1b atp6v1e1b,LOC107658907,LOC107583987,LOC107711482,LOC107579815,LOC107725938,LOC108442797 coding downstream 33463 1658354 ~ 1661399 (+)
ada2b cecr1b,LOC107583967,LOC107656410,LOC107711479,LOC107658918,LOC107725927,LOC107581132 coding downstream 36659 1661550 ~ 1666145 (+)
ccnd2b ccnd2b,LOC107725932,LOC107658897,LOC107583977,LOC107656417,LOC107710106,LOC107579638 coding downstream 92630 1717521 ~ 1726321 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding upstream 64301 1556392 ~ 1557778 (+)
G24925 NA non-coding upstream 335006 1286612 ~ 1287073 (+)
LOC122342413 NA non-coding upstream 494699 1112895 ~ 1127380 (+)
G24811 NA non-coding upstream 688968 864840 ~ 933111 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 970486 649509 ~ 651593 (+)
G25071 NA non-coding downstream 64087 1688978 ~ 1693389 (+)
G25030 NA non-coding downstream 163740 1788631 ~ 1789276 (+)
G25086 NA non-coding downstream 205787 1830678 ~ 1830968 (+)
LOC122342405 NA non-coding downstream 275005 1899896 ~ 1901886 (+)
G25192 NA non-coding downstream 280939 1905830 ~ 1906106 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 290236 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 330855 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 372910 1245578 ~ 1249169 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 956549 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 1182727 434343 ~ 439352 (+)
LOC122343488 NA other downstream 45621 1670512 ~ 1672959 (+)
LOC122342451 NA other downstream 159346 1784237 ~ 1788096 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 369349 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1474846 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1494624 3119515 ~ 3306758 (+)

Expression



Co-expression Network