pdzrn4 (pdzrn4,LOC107587183,LOC107725536,LOC107581937,LOC107694264,LOC107729830)


Basic Information

Item Value
gene id pdzrn4
gene name pdzrn4,LOC107587183,LOC107725536,LOC107581937,LOC107694264,LOC107729830
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6890949 ~ 6918247 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236322.1
GTGTCTCTATGAAGAGGGGTTTAGTACAGCGTGCGTGGATGACTGTTAGCTAGTGTGGatgagagagacacagagattCGAGGGGGTACGATGCACGCACACAGACAGTCATTGACAAGGAATTCAGCAGCATCACACGGGCCGGTCAGAGCGTGATTTTCACACAAAGGAGAGGGGGTGAGAGGTACCCACTGATGAGAGACGTTACTCAACGTTTGAGGGAAATCCCCGGTGTGCCTGTGTGCGTGCACCACTGCCAGAGATCTGTTGGGGGACCCGCGACGGCGAGATGGGCTGTAACCTGTGCACGCTGCAGAAGAGAGAGGAGCACTACAAGCTGCTGTATGAGATCGCACAGGTGAATGGACGTGAATTTTCCAAGTCTGGACATGAGGGGACGGTGGAGGCCATGCGGAAGGATCCCATCGTGGTGCAGGTGTTGAGACGGGGGACCTCGGCCCGGAACCAGAACAGCctacaggaagtgtgtgtggtGGATGTGTGCACTCAGACGGACATCACCTTTGAGCACATCATGGCTCTGGCTAAGATGAGACCCACCACCCCACCTGTGCCAGACATCTGCCCCTTCCTGCTGTCCGACAGTTGTCATTCCATTCAGACTATGGAGCATGAATATTTTGATTGTCCAGAATATGTGGCCAGCACTCAGGCAGAGGTGGACAGGGCAGTCGAATTCGAGTGTGAGGAGATCGAACTCTGTCGAATGAACAGCCAGGAAAAGCTGGGTCTGACTCTCTGTTACCGCACTGATGACGAGGAAGATACAGGCATTTTTGTTGGTCAGGTTGAGCTCAACAGCATAGCTGCAAGGGATGGACGCatcagagagggagacagaATTTTACAGATAAATGGTCATGACGTGCAGAACAGGGAAGAGGCTGTCGCTCTCCTCTCAAATGAAAATTCCAGGTCCATAGTGTTACTTGTCACCAGACCTGAAGGACAGATGGATGGAAGCTGGCTTGATGAAGACCATCAAGATTTCCTAGAGGAGCTGAAGATGGAGATTTTAGAAGAACAGAAAAAGGAGGGAATTCTTCAAACAGCTGGTTGTGTAAAGCAGTCTAAAAGATATGAGGATGCCTCAGCAAGTACAGATACAGCAACATGTTCCTCTACCTTTCTGGAGAAGGACAGTGGCATGAAATGCAGCTTTGAGGAGAGCTCTGAACATGAATTGCTCTCTCATCCCCAAACATGGACTCAAAAACAACTTCGGGACAGGTGGGAAGCGGGCTCGCATTTGGTTCCTATGGACACCGTAAGCTTGACCAGGCAGGAGAAGGGTCAGGAGGCCAAGTTGAGTGAGAATGGAGTGGAGTGTGATCATTTCCAGCAACTCCTGGAGCTCAAGTGCCAGATCCGTAATAGTGGAGAATGTGGGTTGGTCTACAGGCGAAGCAGTACTATTGAGTGCAGCCTGACAGAGCAGGGTGGAAGCGGAGTGGCACGGGAGCTGCACATGCTCAACGAAGAGCTGCGTAGCATCGAACTTGAGTGCCAGAGCATCATGCAAGCTCACCAGCTGCGCAGGGGCAAGCACGACTCTCCTCGAACGGATAAGGAGAGTCGACTGCGTCGTGGCAAGCTTGCAGATATCAATGAACACCCTGAGAGACAACAAAGTGAGAAGCTCAGAGATAAAGACAGCTCTAGTGCCTACAATACAGCTGAAAGCTCTCGCTCGACTCCACTGGGAACAGAAGGTTCACCAGATCACTCACTACAGCGTCGAGTCCACCTGACCAATCAGAGGAACCTTCGGAGTACCCAACACTTACAGAGTCCCTACAGTAGTCCTATCTTGTCTTTACCCAGCCAAAGTAGCCCCACTTGCAGTCGTGCCCATATGTACACCAGCTCCACACCACCCTTACAGACCCCGATCACCAGTCCCGGTTCACAGGGACCCAGCCAGGCCTTCTCCAGCAGCTTGGAGCAAAGCCCCAGCAACCCCTCAGAGTCTGACCCAGCTCTTCCAGCTGATGATGAGCgctgtgagaaagaaagaaaccgGAATAGGGTTGCAACAGCTCGTCACTACCAATCCCCCTACCACAGCAACACCACAACAACTCAGCCACCCAGTACAAGACACTACCAGAGTTACCTACAGCTTCTACAACAAcattcctcttcctctctggAGTACTCCCAGAGCCAGCTTAGCCTCCTCAGCCTCCGTGGACGACCTGGACCCTCGCCACCTGGACGGCTCGAATGGAAGGTCAAGGTACGAGCAGACGGGACCAGGTATGTGGCACGTCGGCCTGCACGAGACCGCATCCTACGTGAACGAGCCTTACGGATCCGGGAGGAACGCAGCGGTGGGATGACTACAGATGACGACGCAGTCAGTGAGTTGAAGATGGGCCGGTACTGGAGTAAAGAAGAACGCAAGCAGCAGTTAGCTCGGGCCAGGGAACAGAGGCGCAGGAGGGAGTTCATGCAGAGGAGCAGACTTGAGTGCCTCAGGGAGACTATGGGGACAGCAAGCGGAGAGGTCAGCATCCTGGAGCTCAGCCATAAGAAGATGCTGAAGAAACGAAACAAGAAGATCCTTGACAACTGGATGACCATTCAAGAGCTCATGAGTCATGGAGCACGAGCACCCGAGGGCACCAAAGTTCACAATGCCTTCCTGTCAGTCACCACAGTTTAGTGACAGCATGACCCTAGGTGGTCTCGTTTTCTGTACTTGCCTCATTCCAAGTGGCCATTTTATAAAGGTGAAGATGcagatatttttcatgttttgtgaaACTGAGTAATACTTTGTCAAAACTCAACTAAACTTCAAGACTTCAAGATATGTGAATGTGCAAAAACTCTTTTGATATACTGACACGTTGACACTACCGTTACAGACCTCGCTGTGTTTTCGTACTAGAATGTATAAAAGACGGTTTTAATAGGATTTTACACACTACATTGTGGTTTAATGTAGTGTTTCTTtccatgcatttgcatttgtattttataaatggcAAGTTTTCATGCGatataaaatacagtacttGAATATCGGCTTTTGCTGCCATTGCATCTTTTAAATCTGAAGTGTAAATATCTGTAACTGTTCTTATCAAGATCTTCATGGGTAAAGGTCTTCATTGCAGTTTAATGGGTTTACAAGAGTCGTTTGACATAATGCACGATGTTACCATTTTAATGGTATTGTATACAATACGTACGATTTTTGTACTGTTCtgtataaacattatttatatttttgagtcTAATAAGTTATCTTATTCCATCTTTATAATGCCAAATGACCCAGTCTGTATCTCAGTCAAGCGCTAAACATGGAGTTTCTACCACTCTCATTGTGCCTTGTATAGAGGCTCATTTTTCTACCACAGGTTGTGAAGAGACACCTTGAGTAATCTTGCTGTCATGTTTTTAGTCTCTTTTTGATGtgtaaaaacaactttgtaGCCAGGTCTATGTGTTCTAGGTGTGCTACATGAGGAAAAAAGgataataaattattgttatataactCAAAAA

Function

symbol description
pdzrn4 Is expressed in basal plate midbrain region; nervous system; and pharyngeal arch. Orthologous to human PDZRN4 (PDZ domain containing ring finger 4).

NR:

description
PREDICTED: PDZ domain-containing RING finger protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236322.1 True 3540 mRNA 0.48 8 6890949 6918247

Neighbor

gene id symbol gene type direction distance location
cntn1b cntn1,cntn1b,LOC107757284,LOC107581848,LOC107694230 coding upstream 26001 6853769 ~ 6864948 (+)
nrcama nrcama,LOC107655582,LOC107725579,LOC107757282,LOC107587145,LOC107580043 coding upstream 37951 6805262 ~ 6852998 (+)
pnpla8 pnpla8,LOC107725648,LOC107587144,LOC107757281,LOC107581761,LOC107694266 coding upstream 88992 6792052 ~ 6801957 (+)
ccdc87 LOC107725647,LOC107587140,LOC107655557,LOC107694239,LOC107595458,LOC107734966 coding upstream 100471 6783948 ~ 6790478 (+)
tnpo3 tnpo3,LOC107757279 coding upstream 115138 6762781 ~ 6775811 (+)
pphln1 LOC107725587,LOC107655578,LOC107587147,LOC107582222,LOC107729837 coding downstream 36550 6954797 ~ 6970418 (+)
prl2 prl2,LOC107655571,LOC107587154,LOC107725674,LOC107582933,LOC107729861 coding downstream 247310 7165557 ~ 7169131 (+)
nuak1a nuak1a,nuak1,LOC107587153,LOC107729860,LOC107690659,LOC107582835,LOC108439414 coding downstream 254225 7172472 ~ 7185360 (+)
abcc9 abcc9,LOC107725580,LOC107655566,LOC107690381,LOC107583096,LOC107587156,LOC107729856 coding downstream 413624 7331871 ~ 7364458 (+)
kcnj8 kcnj8,LOC107725582,LOC107655555,LOC107729834,LOC107690420,LOC107587158,LOC107595650 coding downstream 447307 7365554 ~ 7368988 (+)
G26585 grip1,LOC107587171,LOC107655593 non-coding upstream 486550 6399167 ~ 6404399 (+)
G26517 LOC107655597,LOC107725654,LOC107757228,LOC107560265,LOC107587133 non-coding upstream 592869 6216841 ~ 6298080 (+)
LOC122342718 NA non-coding upstream 968033 5917504 ~ 5922916 (+)
LOC122342717 NA non-coding upstream 974702 5914217 ~ 5916247 (+)
G26422 NA non-coding upstream 977435 5909380 ~ 5913514 (+)
LOC122342579 NA non-coding downstream 66996 6985243 ~ 7013661 (+)
LOC122343425 NA non-coding downstream 139177 7057424 ~ 7061042 (+)
G26669 pus7l,LOC107591455 non-coding downstream 165053 7083300 ~ 7088359 (+)
LOC122342925 NA non-coding downstream 672314 7590561 ~ 7636680 (+)
LOC122342735 NA non-coding downstream 1197641 8115888 ~ 8123874 (+)
vhll NA other upstream 500022 6388543 ~ 6390927 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other upstream 992122 5862607 ~ 5898827 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other upstream 1028636 5781944 ~ 5862313 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other upstream 1493063 5354332 ~ 5397886 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other upstream 1946069 4929471 ~ 4944880 (+)
G26692 NA other downstream 269693 7187940 ~ 7227437 (+)
akr1b1.1 akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878 other downstream 495689 7413936 ~ 7463373 (+)
ube2h ube2h,LOC107676921,LOC107690610,LOC105888480 other downstream 614665 7532912 ~ 7558489 (+)
col7a1l col7a1l,LOC107725642,LOC107744879,LOC107676908,LOC107555540,LOC107592433,LOC108435442 other downstream 1123185 8041432 ~ 8100749 (+)
G26993 NA other downstream 1219491 8137738 ~ 8138439 (+)

Expression


Co-expression Network