ssbp1 (ssbp1,LOC107656434,LOC107658933,LOC107583954)


Basic Information

Item Value
gene id ssbp1
gene name ssbp1,LOC107656434,LOC107658933,LOC107583954
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1366719 ~ 1368745 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236325.1
CAGAACGGGAACGGACGATCGTTGGTGTTTGTTTCTACAGGGGAACATTTTCCAAGCGTACCGGAAACAGCGTGGGGTTATTGAGCATCAAGATCTTCTTAACTTTTAATGACCTGTCATCACACGTCTTAGCATCACCCAGAGTGAAGAAGATGTTGAGAAATGCCTCTGCACAGATACTTAAACAGTTGGTCCGGCACAGGACTACAGATGCTAATTTGATCTTGGAGAGATCCATTAACCGGGTGCAGCTGCTTGGGCGAGTGGGACAGGATCCCGTCATGAGACAGGTGGAGGGCAGAAACCCCGTCACCATCTTCTCCATGGCAACAAATGAGATGTGGCGGTCTGGGGAGGGAGAACCAACAGGTACAGgagaTGTTAGCCAGAAAACGACATGGCACAGAATCTCAGTATTCAAACCAGGCCTCAGAGACGTGGCGTATCAGTACGTAAAGAAAGGGTCTCGGATTCTTGTTGAAGGAAAGCTCGACTATGGAGAGTACACGGATAAAAACAATGTCAGGCGACAGGCAACAACTATTGTTGCAGataatattgtgtttttaagtgaAAACCTGCGAGACGAGTAGTGAGGACTCCTTCCTGGACTGTAGGAaccaaaagaagatattttatatagtgtTACTCTGCTCACTGACATTAAACTCTTGAGTATCTTTCTGTCCGGCCTCATCAGTCATACATAGACTTAAGAAGTCTTGTCGTTTTTTTGATTGTCATGCATCGTGTCTTATTTCCGACAGAGGGCGCTGACAGATGCACTTTGACATGTATCTACTTTCCAGAACCAAGCACTGGATTAGACTCTTTGTATAAGAAATGCTACATTTCCCTTTTCTGGACTTTCGAAACATAAAAGCATCATATTTGACGTTATATCTAATCAAGTCACTTGTAATGTtatgttcataaataaatgtaagttgTTCAGTA
>XM_043236326.1
ttttaaataaGCCGCGAAGTATTGTTTGTAGATTATAAATCGTCGATGTAAAGCGCACAAACAGTGTTGCATGCGTCTTCTAGTTGATGTAAGTGATTGGCGGGAGATTAACATGTGTTTCATCATTGAGTTTGGTTTAATGACCTGTCATCACACGTCTTAGCATCACCCAGAGTGAAGAAGATGTTGAGAAATGCCTCTGCACAGATACTTAAACAGTTGGTCCGGCACAGGACTACAGATGCTAATTTGATCTTGGAGAGATCCATTAACCGGGTGCAGCTGCTTGGGCGAGTGGGACAGGATCCCGTCATGAGACAGGTGGAGGGCAGAAACCCCGTCACCATCTTCTCCATGGCAACAAATGAGATGTGGCGGTCTGGGGAGGGAGAACCAACAGGTACAGgagaTGTTAGCCAGAAAACGACATGGCACAGAATCTCAGTATTCAAACCAGGCCTCAGAGACGTGGCGTATCAGTACGTAAAGAAAGGGTCTCGGATTCTTGTTGAAGGAAAGCTCGACTATGGAGAGTACACGGATAAAAACAATGTCAGGCGACAGGCAACAACTATTGTTGCAGataatattgtgtttttaagtgaAAACCTGCGAGACGAGTAGTGAGGACTCCTTCCTGGACTGTAGGAaccaaaagaagatattttatatagtgtTACTCTGCTCACTGACATTAAACTCTTGAGTATCTTTCTGTCCGGCCTCATCAGTCATACATAGACTTAAGAAGTCTTGTCGTTTTTTTGATTGTCATGCATCGTGTCTTATTTCCGACAGAGGGCGCTGACAGATGCACTTTGACATGTATCTACTTTCCAGAACCAAGCACTGGATTAGACTCTTTGTATAAGAAATGCTACATTTCCCTTTTCTGGACTTTCGAAACATAAAAGCATCATATTTGACGTTATATCTAATCAAGTCACTTGTAATGTtatgttcataaataaatgtaagttgTTCAGTA

Function

symbol description
ssbp1 Predicted to enable single-stranded DNA binding activity. Predicted to be involved in mitochondrial DNA replication and positive regulation of helicase activity. Predicted to act upstream of or within DNA replication. Predicted to be active in mitochondrial nucleoid. Human ortholog(s) of this gene implicated in optic atrophy. Orthologous to human SSBP1 (single stranded DNA binding protein 1).

NR:

description
PREDICTED: single-stranded DNA-binding protein, mitochondrial-like

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0005739 mitochondrion cellular_component
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
K03111 ssb; single-strand DNA-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236325.1 False 957 mRNA 0.43 7 1366719 1368745
XM_043236326.1 True 988 mRNA 0.42 7 1366853 1368745

Neighbor

gene id symbol gene type direction distance location
c4h12orf56 LOC107583952,LOC107656394,LOC107726068,LOC107711499,LOC107658934,LOC107581038 coding upstream 649 1352403 ~ 1366070 (+)
zgc:162331 zgc:162331,LOC107584055,LOC107658936,LOC107725957,LOC107711500,LOC107656412,LOC107579629 coding upstream 15046 1346185 ~ 1351673 (+)
waslb wasl,LOC107725914,LOC107658745,LOC107583945,LOC107656407 coding upstream 94631 1257733 ~ 1272088 (+)
grm8a grm8a,LOC107584025,LOC107658943,LOC107711511,LOC107656388,LOC107725917 coding upstream 255200 970135 ~ 1111519 (+)
znf800b LOC107658945,LOC107583943,LOC107711512,LOC107590539,LOC107656405,LOC107736565,LOC107705332 coding upstream 397360 958334 ~ 969359 (+)
creb3l2 creb3l2,LOC107656406,LOC107579521,LOC107711498,LOC107583953,LOC107726033,LOC107658932 coding downstream 647 1369392 ~ 1385823 (+)
dgki dgki,LOC107658929,LOC107656386 coding downstream 17768 1386513 ~ 1425816 (+)
LOC122342464 LOC107658928 coding downstream 55882 1424627 ~ 1429426 (+)
rassf3 rassf3,LOC107711494,LOC107656425,LOC107658927 coding downstream 61873 1430618 ~ 1463236 (+)
zgc:194209 zgc:194209,LOC107584030,LOC107658744,LOC107725912 coding downstream 94839 1463584 ~ 1468477 (+)
G24925 NA non-coding upstream 79646 1286612 ~ 1287073 (+)
LOC122342413 NA non-coding upstream 239339 1112895 ~ 1127380 (+)
G24811 NA non-coding upstream 433608 864840 ~ 933111 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 715126 649509 ~ 651593 (+)
G24758 NA non-coding upstream 741494 623251 ~ 625225 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding downstream 187647 1556392 ~ 1557778 (+)
G25071 NA non-coding downstream 320233 1688978 ~ 1693389 (+)
G25030 NA non-coding downstream 419886 1788631 ~ 1789276 (+)
G25086 NA non-coding downstream 461933 1830678 ~ 1830968 (+)
LOC122342405 NA non-coding downstream 531151 1899896 ~ 1901886 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 34876 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 75495 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 117550 1245578 ~ 1249169 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 701189 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 927367 434343 ~ 439352 (+)
LOC122343488 NA other downstream 301767 1670512 ~ 1672959 (+)
LOC122342451 NA other downstream 415492 1784237 ~ 1788096 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 625495 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1730992 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1750770 3119515 ~ 3306758 (+)

Expression


Co-expression Network