elk3 (elk3,LOC107743764)


Basic Information

Item Value
gene id elk3
gene name elk3,LOC107743764
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 2847274 ~ 2862389 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236336.1
CGCTCGCGGCAGATTCGGGTTACAGTATactgcgtgcgcgcgcgcgtgtgcgCTCGTGTTCATGAACGTCGGATGGTGGCTGGAGGAGGAAAAGCGTGTTTACACAGACGGGCCGAGCGCCTGGGGAATAGCGCACGGCGAGAGGAAGTGAGCCGGCTCGCTGTCTGCCTGCACCAACTTCctgctcagagagagagagagagagagagcgaagagagagagaaaacagtcgGGATCCCATTACAGTCCGACTGAGAGCTGCCGAGACGGCCGACAGCATGGAAAAACAGCGCATTATACGGAATTCTTTTTAATAAAGCGAAAAGGGAGCCCAAAAAAGCCTGACCGTTACGCAGAGATATGGAGAGTGCTATCACGCTGTGGCAGTTTCTGCTGCAGCTACTCCTGGACCAGAGCCATAAGCACCTGATTTGCTGGACGTCCAACGACGGCGAGTTCAAGCTGCTCAAATCGGAAGAAGTCGCCAAACTCTGGGGCCTCCGCAAGAACAAGACCAACATGAACTACGACAAACTTAGCCGAGCACTACGCTACTACTATGACAAGaacaTCATCAAGAAGGTGATTGGCCAGAAGTTTGTGTACAAGTTTGTCTCGTTCCCTGATATACTGAAGATGGATCCCCAAGTGGTGGAGCTCGGGGGTCGGGAAGGGGGTCACATTGCAGGGGGTGTCATGTTGCAGGAGGTGGAGTCGGATTGCGGCGAGGGGGAGGAGTCTCCAAAGCTGTCGCTGTCGTCGCTGAGAAGCCCCGCCTGCAGGAACGAGTATCGCCACTCCGGTCTGTACTCGTCCTTCACAGTCAGCTCCCTCCAGAGCCCGCCTCCTCTGCTGCGTCCAATCAAAGTCGAGAAGCAGCGAGGGGGCGAACGAGGGGAGGAGGGACAAACGGTGATTCGCTTTGTCACTAATCGATCAGAAAAGGTCGTTCCCCTGGCTTCCTCGCCGCCACCTGCCTCCGCGGAGGTCTTCTTCGCTTCAAAAACCTCCCCTTGTTCGTCCCGTAGCCCCTCCCCTTCTCACAGCCCCGTCTACACGCTGCGGCCGGAGCGCAGCCCGGAGGCTCGCATAGACGAATCAGAGCAGAGCGTTCAGCCTCTAAATTTATCATCCAGCCACAGGGAACGAGCCCAGAATCGGGCCACACCCCCCGAGAGGAGGGCCGGTAGCAACGGACTGCCTCCCAAAGCTCGGAAACCCAAAGGGCTGGAAATCTCCGCCCCTTCCATACTGCTTTCAGGAAGTGACTTGGGCTCCATCGCCCTCAACAGCCCAGCACTGCCCTCAGGGTCACTCACACCAGCCTTTTTCACTGCACAGactCCCTCTGGCTTGCTGTTGACGCCCAGTCCTCTCCTGTCCTCCATTCATTTCTGGAGCAGCCTGAGTCCCGTGGCCCCTCTCAGCCCCGCCAGGCTACAGGGCCACGGGTCACTCTTTCAGTTCCCGACCCTGCTGAACGGCCCGCTCCCGGTACCCCTCCCCAACCTGGactcatcttcatcctcctcctcctcctcctctctcctcctctcctccggcGCCCAGAAATCCTGATTTCTGGACACTCCACACATCACCCCACCCACACCCCCACCTCTCCAGAGTCGTACCTTTGCTCTCACACTAAGAAGGAATTAAGGACCTTCCTGCCGTTTTTGAGCCAGACTGCACTTCGCCCCCTCGCGGCCACCCTTCGGTTCTGCCGGACTTCGCTTTCTTCTGTAACTCAGGCTGCAGTCCAAACagctcaccaaaaaaaaaaaaaaaacaaacaaa

Function

symbol description
elk3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in vascular endothelium. Orthologous to human ELK3 (ETS transcription factor ELK3).

NR:

description
PREDICTED: ETS domain-containing protein Elk-3

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09430 ELK3; ETS domain-containing protein Elk-3 (SRF accessory protein 2)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236336.1 True 1800 mRNA 0.57 6 2847274 2862389

Neighbor

gene id symbol gene type direction distance location
mdfic mdfic,si:ch211-262n1.4,LOC107658868,LOC107656347,LOC107580133,LOC107584008 coding upstream 205437 2622539 ~ 2641837 (+)
foxp2 foxp2 coding upstream 244773 2505946 ~ 2602501 (+)
ifrd1 ifrd1,LOC107580056,LOC107726045,LOC107656357,LOC107658876,LOC107579159 coding upstream 452833 2388979 ~ 2394441 (+)
LOC122343453 LOC107710120,LOC107658877,LOC107726057,LOC107580024,LOC107656361,LOC107584004,LOC100535105 coding upstream 657526 2178532 ~ 2189748 (+)
utp20 utp20,LOC107658916,LOC107710084,LOC107656365,LOC107725898 coding upstream 824964 2001089 ~ 2022310 (+)
si:ch1073-67j19.1 LOC107725978,LOC107743829,LOC107580374 coding downstream 45070 2907459 ~ 2908695 (+)
LOC122342536 NA coding downstream 49789 2912178 ~ 2913479 (+)
phyh phyh,LOC107743808 coding downstream 53772 2916161 ~ 2920243 (+)
ucmaa ucmaa,ucma,LOC107658769,LOC107581267,LOC107656340 coding downstream 60832 2923221 ~ 2927098 (+)
cdc123 cdc123,LOC107658858,LOC107726014,LOC107656335 coding downstream 75683 2938072 ~ 2941597 (+)
LOC122343411 NA non-coding upstream 21485 2790078 ~ 2825789 (+)
LOC122343412 NA non-coding upstream 59617 2726802 ~ 2787657 (+)
LOC122342395 NA non-coding upstream 127913 2686424 ~ 2719361 (+)
LOC122342427 NA non-coding upstream 167531 2666342 ~ 2679743 (+)
LOC122342588 NA non-coding upstream 184229 2662114 ~ 2663045 (+)
G25453 NA non-coding downstream 68719 2931108 ~ 2931859 (+)
G25455 wnk1,wnk1b,LOC107725976,LOC107658853 non-coding downstream 72773 2935162 ~ 3030892 (+)
G25456 NA non-coding downstream 155178 3017567 ~ 3024764 (+)
G25502 LOC107573038 non-coding downstream 546612 3409001 ~ 3434462 (+)
G25504 NA non-coding downstream 558247 3420636 ~ 3429146 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other upstream 851738 1994240 ~ 1995536 (+)
LOC122342451 NA other upstream 1059178 1784237 ~ 1788096 (+)
LOC122343488 NA other upstream 1174315 1670512 ~ 1672959 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 1515431 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 1556050 1288297 ~ 1291224 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 237348 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 257126 3119515 ~ 3306758 (+)
G25514 NA other downstream 619240 3481629 ~ 3502094 (+)
G25551 NA other downstream 875113 3737502 ~ 3738594 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other downstream 1367240 4229629 ~ 4231092 (+)

Expression


Co-expression Network