zgc:162331 (zgc:162331,LOC107584055,LOC107658936,LOC107725957,LOC107711500,LOC107656412,LOC107579629)


Basic Information

Item Value
gene id zgc:162331
gene name zgc:162331,LOC107584055,LOC107658936,LOC107725957,LOC107711500,LOC107656412,LOC107579629
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 1346185 ~ 1351673 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236338.1
gagagagagagagagagagagagagagagagagagcagcgcACATGTACAGGAGGATGTGTGAGTGACTGCAGAAAGCGTGCGTCGCGTTACGCAAGCGGCTCATGATCAGCAGCGAGAGGAGctgcagcagagagagagagagagagagagagagagagagagagagagagagagagagaggacaaacacacagcagagaGAGTCAGACTAACtccctcatctctctctctctccctgggCTGCCGAAGCGCAGGAGTGTTTCTGGAGACGCCAAGGACCAGCGGACATGAACGACTGACATTCACGCTTTCCGTGTCATTTAAGCCCAGACCTCGATGGCTCTGAAGGAGAGCCGCCTCACCTGGGGCTTCCTGCTGTGGTCTGCGACGTGGAGCTCGGCTTGGTCCTTTACGCCGCACGATGGGTCCTCGGTCAGTCCCATATTTCATCGCAGCACTCCACCTGCCCCCGAGACGGGGACGAACAGAACTGAGGCGCCTCCGAGCAACTATACAGGCCTGAGCTGCACGTCGCTGCTTCCCCCTCGGCGAGGTTCGTACTACGTAGAGAAGGGCGGTGGGATGTCCGTGGGAACCGTTCTGGCGTTCTGGTGCCTCGAGGGCTACCAGCTGGTGGGCAGCGAGAAGATCAGCTGTGTGCTGCGAGGCGACACCGCTCAGTGGAGCAACTACCCGCCCGACTGCGAGGCCATTCCTAAACCGGAGGACCGCGGACTGAGAGTGGCCGTGCTGGCATCGGTAGTGAGCAGCATCGTCATCCTCGCCATGTCCGTGTCCTTCATCATCTGCTGTCTGCAGGAGCGCATGAGCAAAGAGAGGGCGgaacggacggacggacggggCAGGACAAGAGACAAGCACAAATCGTCCTGGAGGAGCGAGTGCTGGCTGGAGAGAGATGAAGGAGACTGGGAAGCTTTTCCACCACCTAAAATCTACAACCTTTCCCAGCATCTCGACCCCCACCTGACCCCCGAGAGCCCGGTCTATGTGGGGGGACTGGCTGGTTACGATAACCGCGGGTATCAGAGGAGCCAGGAAAACCTCCTGAAAGCTCCTCTTCCTGGTCTGTACCGTACGGAAAGTCAGATGTACCCACACGTGGTGCTGCAGAGGGTTCCCACACCCACAGTGCCGAGCGCACCCAGCGCTCCTGTCTACCTCCGCCTCTCCACCCCTCCGCCCGCAGAAGGCCCCAGCGAGCCTCCGTACCCCAGCGCCGCTCCACAGCGTCTGTGGCCATagaaacacacttttattcagaacTTTTACAACTGTCGCCATGGCGACGGATTACAGCCCCTACATGCCAACGGCTCCTGGGGTTCAGAAAACCGAGAGAAATGACGGACTCAAGCACACAGATACACAGCTAGAGCTAGATGTTGGACCAGGTGTGTGTCCAAATGTAGTTACATGTAGTGTGTTGCACATGTGAGGAGATTTCCGAGCGACTCTAAGGAGGCCCACTTAGTTTCCTGGAGAGGAAAGGTATATTAGGAAAGCTGAGGACTTCATGCTGGTACTGTGATCTGctccaggcttttttttttcagttagtgctttttattttcatggcaaagtTTTTGACTACTTGCACTCATGAATTGCAAAATGCAACTGTGTCAGGTCACCTTAGAGCatcaatttaatatttctatgtttttatattatggaAGTGTAGCAGAATTACACTGTTGTCCAGGTTACGGACATATGTTGGATCTCATGAACATTATACTTAAAACTTGATTTtgtttataacaaataaaaagattaagATCATTG

Function

symbol description
zgc:162331 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SUSD3 (sushi domain containing 3).

NR:

description
PREDICTED: sushi domain-containing protein 3

GO: NA

KEGG:

id description
K23821 SUSD3; sushi domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236338.1 True 1810 mRNA 0.54 5 1346185 1351673

Neighbor

gene id symbol gene type direction distance location
waslb wasl,LOC107725914,LOC107658745,LOC107583945,LOC107656407 coding upstream 74097 1257733 ~ 1272088 (+)
grm8a grm8a,LOC107584025,LOC107658943,LOC107711511,LOC107656388,LOC107725917 coding upstream 234666 970135 ~ 1111519 (+)
znf800b LOC107658945,LOC107583943,LOC107711512,LOC107590539,LOC107656405,LOC107736565,LOC107705332 coding upstream 376826 958334 ~ 969359 (+)
atxn7l1 LOC107658944,LOC107705340,LOC107583941,LOC107656393,LOC107590536,LOC107718553 coding upstream 388835 939160 ~ 957350 (+)
sypl1 sypl1,LOC107590538,LOC107658778,LOC107583939,LOC107656429,LOC107718552 coding upstream 408362 934046 ~ 937823 (+)
c4h12orf56 LOC107583952,LOC107656394,LOC107726068,LOC107711499,LOC107658934,LOC107581038 coding downstream 730 1352403 ~ 1366070 (+)
ssbp1 ssbp1,LOC107656434,LOC107658933,LOC107583954 coding downstream 15046 1366719 ~ 1368745 (+)
creb3l2 creb3l2,LOC107656406,LOC107579521,LOC107711498,LOC107583953,LOC107726033,LOC107658932 coding downstream 17719 1369392 ~ 1385823 (+)
dgki dgki,LOC107658929,LOC107656386 coding downstream 34840 1386513 ~ 1425816 (+)
LOC122342464 LOC107658928 coding downstream 72954 1424627 ~ 1429426 (+)
G24925 NA non-coding upstream 59112 1286612 ~ 1287073 (+)
LOC122342413 NA non-coding upstream 218805 1112895 ~ 1127380 (+)
G24811 NA non-coding upstream 413074 864840 ~ 933111 (+)
G24768 LOC107718544,LOC107658747,LOC107590532 non-coding upstream 694592 649509 ~ 651593 (+)
G24758 NA non-coding upstream 720960 623251 ~ 625225 (+)
G24968 LOC107583957,LOC107656385,LOC107579307,LOC107711491 non-coding downstream 204719 1556392 ~ 1557778 (+)
G25071 NA non-coding downstream 337305 1688978 ~ 1693389 (+)
G25030 NA non-coding downstream 436958 1788631 ~ 1789276 (+)
G25086 NA non-coding downstream 479005 1830678 ~ 1830968 (+)
LOC122342405 NA non-coding downstream 548223 1899896 ~ 1901886 (+)
LOC122342419 coa6,LOC107726010,LOC107583951,LOC107658937 other upstream 14342 1329452 ~ 1331843 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other upstream 54961 1288297 ~ 1291224 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other upstream 97016 1245578 ~ 1249169 (+)
G24771 plekha5,LOC107584023,LOC107658747 other upstream 680655 654092 ~ 665530 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other upstream 906833 434343 ~ 439352 (+)
LOC122343488 NA other downstream 318839 1670512 ~ 1672959 (+)
LOC122342451 NA other downstream 432564 1784237 ~ 1788096 (+)
lyrm5a LOC107725960,LOC107578730,LOC107658915,LOC107710125,LOC107583994 other downstream 642567 1994240 ~ 1995536 (+)
ninj2 ninj2,LOC107725989,LOC107584020,LOC107743858,LOC107656339,LOC107658851,LOC107581271 other downstream 1748064 3099737 ~ 3117994 (+)
erc1b erc1,LOC107725987,LOC107656325,LOC107580227,LOC107743718 other downstream 1767842 3119515 ~ 3306758 (+)

Expression


Co-expression Network