atp5f1c (atp5c1,LOC107728502,LOC107748457,LOC107555824)


Basic Information

Item Value
gene id atp5f1c
gene name atp5c1,LOC107728502,LOC107748457,LOC107555824
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13146654 ~ 13150706 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236345.1
TGCTATCGCGAGATTATGACGAGCGCTTCTATCTGCGCTTTATTTGCGCCTGCGCAGACCGGCTGCTCTGACCTTCGTTGAAGTGAACATGTTCGCCAGGACTAGCGCGGCGGTGTTCCTCCCACAATGTGGGCAGGTCAGGAGCATGGCTACCTTGAAGGACAtcACCATTCGGTTGAAGTCCATCAAGAACATCCAGAAGATCACCAAGTCCATGAAGATGGTGGCCGCGGCAAAGTATTCCAGAGCCGAGAGATCCCTGAAGCCCGCCCGGGTCTACGGCACCGGTGCCATGGCCCTCTACGAGAAGGCTGAGATCAAGGCTCCAGAAGACAAGAACAAGCACTTGATCATCGGCGTGTCTTCTGACCGCGGCCTCTGCGGCGCCATCCACAGCAGCGTGGCCAAAACCATAAAGAACGAGATCGCCAAGCTCGCTGGTTCCGGCAAAGAGGTCATGGTTGTCAACGTGGGTGACAAGCTCCGAGGTCTGCTGTACAGGACCCACGGCAATCACATCCTGATGAACTGTAAGGAGGTGGGCCGCAAACCTCCCACTTTCACCGACGCTTCCATCATCGCCACAGAGCTTCTGAACTCCGGCTACGAGTTCGACCAGGGCTCCATCATATACAACAGATTTAGGTCTGTGATTTCGTATAAGACGGATGAGAAACCTCTGTTTTCGATGGACACCGTTGCAGGCTCAGAAAACATGGGCGTCTACGACGACATCGACGCCGACGTGCTGAGGAACTATCAGGAGTTTGCTCTGGTCAACATCATCTACTTCGGCATGAAGGAGTCCACCACCAGTGAGCAGAGCGCCAGGATGACCGCTATGGACAGCGCCAGCAAGAACGCTTCTGAGATGATTGACAAGCTGACTCTGACCTTCAACCGAACCCGCCAGGCCGTCATCACTAAGGAGCTCATTGAGATCATTTCTGGAGCCGCTGCTCTAAACTGAAGCGTGACCGAGATAAAGAGGAGCCCCGTGGACGTTCGGAGCGGTTCTGGCTCGCGTGCTCTCCGGTTTCCGTCACCCGGTGTAGAATTCATAAATGTATACGTGCTTCTGTTTGTACAATTATCAGACAAAATAAACCTCTTACAGAGAAA
>XM_043236346.1
TGCTATCGCGAGATTATGACGAGCGCTTCTATCTGCGCTTTATTTGCGCCTGCGCAGACCGGCTGCTCTGACCTTCGTTGAAGTGAACATGTTCGCCAGGACTAGCGCGGCGGTGTTCCTCCCACAATGTGGGCAGGTCAGGAGCATGGCTACCTTGAAGGACAtcACCATTCGGTTGAAGTCCATCAAGAACATCCAGAAGATCACCAAGTCCATGAAGATGGTGGCCGCGGCAAAGTATTCCAGAGCCGAGAGATCCCTGAAGCCCGCCCGGGTCTACGGCACCGGTGCCATGGCCCTCTACGAGAAGGCTGAGATCAAGGCTCCAGAAGACAAGAACAAGCACTTGATCATCGGCGTGTCTTCTGACCGCGGCCTCTGCGGCGCCATCCACAGCAGCGTGGCCAAAACCATAAAGAACGAGATCGCCAAGCTCGCTGGTTCCGGCAAAGAGGTCATGGTTGTCAACGTGGGTGACAAGCTCCGAGGTCTGCTGTACAGGACCCACGGCAATCACATCCTGATGAACTGTAAGGAGGTGGGCCGCAAACCTCCCACTTTCACCGACGCTTCCATCATCGCCACAGAGCTTCTGAACTCCGGCTACGAGTTCGACCAGGGCTCCATCATATACAACAGATTTAGGTCTGTGATTTCGTATAAGACGGATGAGAAACCTCTGTTTTCGATGGACACCGTTGCAGGCTCAGAAAACATGGGCGTCTACGACGACATCGACGCCGACGTGCTGAGGAACTATCAGGAGTTTGCTCTGGTCAACATCATCTACTTCGGCATGAAGGAGTCCACCACCAGTGAGCAGAGCGCCAGGATGACCGCTATGGACAGCGCCAGCAAGAACGCTTCTGAGATGATTGACAAGCTGACTCTGACCTTCAACCGAACCCGCCAGGCCGTCATCACTAAGGAGCTCATTGAGATCATTTCTGGAGCCGCTGCTCTATAAAGAGGAGCCCCGTGGACGTTCGGAGCGGTTCTGGCTCGCGTGCTCTCCGGTTTCCGTCACCCGGTGTAGAATTCATAAATGTATACGTGCTTCTGTTTGTACAATTATCAGACAAAATAAACCTCTTACAGAGAAA
>XM_043236347.1
TGCTATCGCGAGATTATGACGAGCGCTTCTATCTGCGCTTTATTTGCGCCTGCGCAGACCGGCTGCTCTGACCTTCGTTGAAGTGAACATGTTCGCCAGGACTAGCGCGGCGGTGTTCCTCCCACAATGTGGGCAGGTCAGGAGCATGGCTACCTTGAAGGACAtcACCATTCGGTTGAAGTCCATCAAGAACATCCAGAAGATCACCAAGTCCATGAAGATGGTGGCCGCGGCAAAGTATTCCAGAGCCGAGAGATCCCTGAAGCCCGCCCGGGTCTACGGCACCGGTGCCATGGCCCTCTACGAGAAGGCTGAGATCAAGGCTCCAGAAGACAAGAACAAGCACTTGATCATCGGCGTGTCTTCTGACCGCGGCCTCTGCGGCGCCATCCACAGCAGCGTGGCCAAAACCATAAAGAACGAGATCGCCAAGCTCGCTGGTTCCGGCAAAGAGGTCATGGTTGTCAACGTGGGTGACAAGCTCCGAGGTCTGCTGTACAGGACCCACGGCAATCACATCCTGATGAACTGTAAGGAGGTGGGCCGCAAACCTCCCACTTTCACCGACGCTTCCATCATCGCCACAGAGCTTCTGAACTCCGGCTACGAGTTCGACCAGGGCTCCATCATATACAACAGATTTAGGTCTGTGATTTCGTATAAGACGGATGAGAAACCTCTGTTTTCGATGGACACCGTTGCAGGCTCAGAAAACATGGGCGTCTACGACGACATCGACGCCGACGTGCTGAGGAACTATCAGGAGTTTGCTCTGGTCAACATCATCTACTTCGGCATGAAGGAGTCCACCACCAGTGAGCAGAGCGCCAGGATGACCGCTATGGACAGCGCCAGCAAGAACGCTTCTGAGATGATTGACAAGCTGACTCTGACCTTCAACCGAACCCGCCAGGCCGTCATCACTAAGGAGCTCATTGAGATCATTTCTGGAGCCGCTGCTCTGTAA

Function

symbol description
atp5c1 Predicted to contribute to proton-transporting ATP synthase activity, rotational mechanism. Predicted to be involved in mitochondrial ATP synthesis coupled proton transport. Predicted to act upstream of or within ATP biosynthetic process and ion transport. Located in mitochondrial inner membrane and myelin sheath. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human ATP5F1C (ATP synthase F1 subunit gamma).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02136 ATPeF1G, ATP5C1, ATP3; F-type H+-transporting ATPase subunit gamma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236345.1 True 1122 mRNA 0.54 10 13146654 13150706
XM_043236346.1 False 1103 mRNA 0.54 9 13146654 13150706
XM_043236347.1 False 967 mRNA 0.55 8 13147950 13150706

Neighbor

gene id symbol gene type direction distance location
taf3 taf3,LOC107555823,LOC107675973,LOC107578374 coding downstream 1746 13102315 ~ 13144908 (-)
gata3 gata3,LOC107555822,LOC107748455,LOC107675980 coding downstream 55819 13075216 ~ 13090835 (-)
celf2 celf2,LOC106927059,LOC108233267,LOC101484207,LOC107092344 coding downstream 475183 12539057 ~ 12671471 (-)
usp6nl usp6nl,LOC107669711,LOC107710686,LOC107572286 coding downstream 610328 12492354 ~ 12536326 (-)
LOC122343505 trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707 coding downstream 715768 12413786 ~ 12430886 (-)
itih2 itih2,LOC107555817,LOC107666937,LOC107748478 coding upstream 1715 13152421 ~ 13164123 (-)
pfkfb3 pfkfb3,LOC107555830,LOC107748462,LOC107663448 coding upstream 117369 13268075 ~ 13275474 (-)
rbm17 rbm17,LOC107755150,LOC107748463,LOC107663450 coding upstream 130477 13281183 ~ 13301329 (-)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding upstream 222925 13373631 ~ 13375343 (-)
nr2c1 nr2c1,LOC107689225,LOC107755159 coding upstream 225468 13376174 ~ 13384446 (-)
LOC122342546 NA non-coding downstream 75134 12988707 ~ 13071520 (-)
G28130 NA non-coding downstream 877914 12265665 ~ 12268740 (-)
LOC122342788 NA non-coding downstream 908517 12236645 ~ 12238137 (-)
G28117 NA non-coding downstream 991403 12148132 ~ 12155251 (-)
G28086 NA non-coding downstream 1127653 12018609 ~ 12019001 (-)
G28349 NA non-coding upstream 76994 13227700 ~ 13227947 (-)
G28350 NA non-coding upstream 78388 13229094 ~ 13229319 (-)
G28353 NA non-coding upstream 91800 13242506 ~ 13245388 (-)
G28359 NA non-coding upstream 99945 13250651 ~ 13252034 (-)
G28377 NA non-coding upstream 161167 13311873 ~ 13319748 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 657473 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1130887 12014631 ~ 12015767 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other downstream 1150015 11841965 ~ 11996639 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other downstream 1462792 11653470 ~ 11683862 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other downstream 1572888 11414720 ~ 11573766 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other upstream 26255 13176961 ~ 13186890 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other upstream 166226 13316932 ~ 13361938 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other upstream 260918 13411624 ~ 13432703 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 541765 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 664868 13815574 ~ 13831851 (-)

Expression


Co-expression Network