tnpo3 (tnpo3,LOC107757279)



Basic Information


Item Value
gene id tnpo3
gene name tnpo3,LOC107757279
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6762781 ~ 6775811 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043236386.1
ATTATACTCGTAATAAGTGCGCCCGGCCATAAACTCAAATCACAACCGTTGCAACACGTCCCGACCCGAAAAGTTCGCGTTTAGGAGCGGATACCGCGCCGAGAGTCGACGCGCGCGGCGCGTTATTATTCTAAAACCGCTCCAGCCCGGGCTCGTTATAGTTCCTGCGCGCTGGTTTCCACACGGACTTGTTTGACAGGAGCGCCCTGTGTCTGCTTGAGATGGCGGCCAGATCGGAGAACGCGAGGGCCGAATAAACAGTCAACCTGTGCGTCTACAAGCTCCCGAGAAGCGCGAGCCGTGTCATTTACCCCATATCGACACCCTCTAGGAACAGAAGTACGCCATGGAAGGCGGGAAACCCACCCTGCCGCTGGTTTACCAGGCGGTGCAAGCGCTGTATCACGACCCGGACCCTGCCGGCAAGGAGCGCGCCTCGGTCTGGCTGGGAGAGCTGCAGAGATCGATGTATGCATGGGAGATCTCGGATCAGCTCCTGCAGCTGAAGCAGGACGTGGAATCGTGTTACTTTGCAGCCCAAACAATGAAGATGAAGATCCAGACGTCGTTCTACGAGCTTCCCCCAGAGACCCACACCTCACTGAGAGATTCCCTCCTGTCTCACATCCAGAACCTCAAAGACCTGTCTCCCATCATCGTCACACAGcttGCATTGGCAATCGCAGATCTGGCTCTTCAGATGGCCTCGTGGAAGGGCTGCGTTCACACCCTCATAGAAAAATACAGTAACGACGTGTCCTCGATGCCTTTCCTGATTGAGATCCTCACCGTTTTGCCAGAGGAGGTGCACAGTCGCTCTTTGAGGATCGGAGCCAATCGGCGGACGGAGATCATTGAGGATCTGGCCTACTACTCCACCACAGTCGTCACTCTTCTGGTGACGTGTGCAGAGAAGTCCGGACACGACGAGAAGATGCTTATCAAGGTGTTCCGGTGTTTGGGGAGCTGGTTCAATTTAGGAGTGCTGGACAACAACTTCATGGCCAGCAATCAACTGCTGATGATTCTCTTCCAAGTGCTGCAGAGGGACGAGACGTCCACCAACTTGCATGAGGCGGCATCGGATTGCGTGTGCTCGGCGCTGTACGCCATCGAGAATGTGGCCGTACACATGCCTTTGGCCATGCAGCTCTTCCAGGGAGTCCTCTCTCTAGAAACGGCCTACCACATGGCTGTAGCCCGCGAGGACCTCGATAAGGTGCTAAATTATTGCCGGATCTTTACGGAATTGTCCGAGACATTTTTGGAGATGACCGTAAGGACTCCTGGCCAGGGCATGGGAGATCTACGCACCTTAGAGTTGCTGCTTATTTGTGCAGGCCATCCCCAATACGAGGTTGTTGAGATCTCGTTCAACTTCTGGTACCGGCTAGGAGAACATCTTTATAAAATGAACGATCCGGCTCTTCACAGAGTGTTCAAGCCGTACATACAGAGATTACTGCACAGTCTCGCCCGCCACTGCCAGCTCGACCCAGATCACGAAGGAGTCCCAGAGGACACGGATGATTTTGGGGAGTTCAGGATGAGAGTGTCTGATCTCGTAAAAGATGTAATTTTCCTAGTCGGCTCCATGGAGTGTTTCTCACAGCTGTATTCAACTCTGAGGGAGGGAAACCCCCCATGGGAAGTAACTGAGGCTGTTCTGTTCATCATGGCTTCCATAGCTAAGAGTATCGATCCTGAGAATAATCCCACTCTGACGGAGGTGCTGGAGCAGGTAGTGTTGCTTCCCGAGACGGTCCACCTTGCCGTCCGCTACACCAGCATCGAGCTGGTTGGCGAGATGAGCGAAGTAATCGACCGGAACCCTTGCATGTTAGATCCTGTATTGAACTTCCTGATGAAGGGTTTGCGGGAGAAGCCGTTGGCCTCTGTGGCAGCTAAAGCCATTCACAACATCTGCTCGGTGTGTCGAGATCACATGGCACAGCACTTCCAGGGCCTGCTGAACATCGCCCGCTCGCTCGACTCATTCGCCCTGTCCACGGATGCTGCGGTTGGCTTACTAAAAGGCACAGCGCTGGTATTGGCCCGCCTCCCCCTGGAGAAGATTGCAGAGTGTCTGAACGATCTGTGCGCGGTTCAGGTCATGGCACTGAGGAAGCTGCTGGCTCAGGACTCCAGTAGTGGGAAGTCATCAGACCCGACTGTGTGGCTGGACAGACTGGCTGTTATCTTCAGACACACAAACCCCATAGTAGAGAATGGACAGACACACCCCTGCCAGAAAGTCATTCAAGAGATCTGGCCGGTGTTGTCTGAGACATTGAACGCCCACCAGAATGATAACCGGATAGTGGAGCGCTGCTGCCGTTGCTTGAGATTTGCAGTACGTTGCGTAGGCAAAGGCTCTGCTTCCCTTTTACAGCCGCTTGTTACTCAGATGGTGAGTGTGTACCAGGTGTACCCTCACTCCTGTTTCCTGTACCTGGGCAGCATTCTAGTGGACGAGTATGGCATGGAGGAGGGATGCAGACAAGGCCTGTTGGATATGCTGCAGGCTCTCTGTATGCCGACCTTCCAGCTGTTAGAGCAGCCGAATGGTCTGCGCAATCATCCCGACACAGTGGACGATCTTTTTAGACTCGCCACAAGGTTTGTCCAGCGTAGTCCGGTCACGTTGCTGAACAGCAGTATTATCGTCCACATCATCCAGTGTGCCATCGCTGCCACCACCCTGGACCATCGAGATGCCAACTGCAGCGTCATGAAGTTTATCAGAGACCTCATTCACACCGGGGTCACCAATGACCATGAGGACGACTTTGAGATGCGAAAGCGTCTGATTGGCCAGGTGATGGAGCAGCATGGGCAGCAGCTAGTGACTCAGCTGATCAACACCTGCTGTTTCTGCCTGCCGCCTTACACTCTGCCTGACGTGGCGGAGGTACTCTGGGAGATCATGGTCTTTGATCGGCCGACGTTTTGCCGCTGGCTGGAAACTGCACTGAAGGGTCTTCCAAAAGAAACAGCAGGAGGCGCTGTAACCGTCACACACAAGCAGCTCACCGACTTCCATAAGCAGGTCAcgagTGCAGAGGAATGTAAACAGGTTTGTTGGGCGATAAGAGAGTTTACCAGGCTGTACCGATAGCTGTCTTTTACCTGCTGATGCTGCAAGACCAGgtcagattttttgttttgctaacaTTTGGAGGAAGCGGCAAAGGGAGCCACGATGACCACTGTTGAGAAACTAAAGGGAACTCTTGCATGAAGGATTAATGGGACTTGGCAAAATGGAAAAGCCGACCAATTGAATTGGAGCTTTGGAATGGCAGGGTTTCAGGAAAAGCAAATTGCCTTGTGGGTGTCAAAAGACCGCAGCCCCGTCCCTCCCTCTTACCCCTACGAGCACACAGATGCCAGCCGCCGCGAGAGAAAGGGGGGGATATTTCGGAAGGGACACTGTCGTCTTGTGGGAGGGGGGCCGTCGTATGGACACTGAATCACATACACCCATTTCAAAACATGGATGGTCTGCATCGGTCGGATTTCTGGGGGTCCATCAAAAACCAACGACAAATAAGGATGTGCCTGGTTGCAAATCATAATgcatcgttaaaaaaaaaaaaaaaaaaaaagagagagacttgtacgtttttaaaaacaaaaatggagaTTTATTTTCATGGACGTGTGATTAGAGATCAAGTTATGGCTTCGCTGCCAGTGCCATAAAATGATTACCAAACTAAAGATTGTCGCAGCAGTCTGCGCCTGTGGGACATTTGCAGAGGGATAGTCGGCATCACCTTTGATCTTTTTAAAAGTTGGATGGGATTTTATCCGTACAGGTTATGCTGTAAATTATGGAGTGGACTGACTGGcaggggctttttttttttttttttttttttttgttctttcaccATATTGGCACATCTTGAGATGCAGAGGTCGTCTTCGGGCCGATTGTGTGaacaaataaaaccaacatTGTGAGGAACAAA

Function


symbol description
tnpo3 Acts upstream of or within RNA splicing; T cell differentiation; and mRNA processing. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 2. Orthologous to human TNPO3 (transportin 3).

NR:

description
PREDICTED: transportin-3 isoform X1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K15436 TRPO3, MTR10; transportin-3

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043236386.1 True 3977 mRNA 0.52 23 6762781 6775811
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Neighbor


gene id symbol gene type direction distance location
calua calua,LOC107587143,LOC107725564,LOC107655589,LOC107578970 coding upstream 7750 6750516 ~ 6755031 (+)
dyrk2 dyrk2,LOC107655591,LOC107587139,LOC107725670,LOC107757277,LOC107694272,LOC107573871 coding upstream 73846 6671686 ~ 6688935 (+)
si:dkey-39a18.1 LOC107725505,LOC107587172,LOC107694240,LOC107757230,LOC107595032 coding upstream 100427 6656669 ~ 6662354 (+)
cand1 cand1,LOC107694273,LOC107571724,LOC107587138,LOC107655592 coding upstream 108128 6641863 ~ 6654653 (+)
wif1 wif1,LOC107757271,LOC107725640,LOC107594874,LOC107587135 coding upstream 379518 6372058 ~ 6383263 (+)
ccdc87 LOC107725647,LOC107587140,LOC107655557,LOC107694239,LOC107595458,LOC107734966 coding downstream 8137 6783948 ~ 6790478 (+)
pnpla8 pnpla8,LOC107725648,LOC107587144,LOC107757281,LOC107581761,LOC107694266 coding downstream 16241 6792052 ~ 6801957 (+)
nrcama nrcama,LOC107655582,LOC107725579,LOC107757282,LOC107587145,LOC107580043 coding downstream 29451 6805262 ~ 6852998 (+)
cntn1b cntn1,cntn1b,LOC107757284,LOC107581848,LOC107694230 coding downstream 77958 6853769 ~ 6864948 (+)
pdzrn4 pdzrn4,LOC107587183,LOC107725536,LOC107581937,LOC107694264,LOC107729830 coding downstream 115138 6890949 ~ 6918247 (+)
G26585 grip1,LOC107587171,LOC107655593 non-coding upstream 358382 6399167 ~ 6404399 (+)
G26517 LOC107655597,LOC107725654,LOC107757228,LOC107560265,LOC107587133 non-coding upstream 464701 6216841 ~ 6298080 (+)
LOC122342718 NA non-coding upstream 839865 5917504 ~ 5922916 (+)
LOC122342717 NA non-coding upstream 846534 5914217 ~ 5916247 (+)
G26422 NA non-coding upstream 849267 5909380 ~ 5913514 (+)
LOC122342579 NA non-coding downstream 209432 6985243 ~ 7013661 (+)
LOC122343425 NA non-coding downstream 281613 7057424 ~ 7061042 (+)
G26669 pus7l,LOC107591455 non-coding downstream 307489 7083300 ~ 7088359 (+)
LOC122342925 NA non-coding downstream 814750 7590561 ~ 7636680 (+)
LOC122342735 NA non-coding downstream 1340077 8115888 ~ 8123874 (+)
vhll NA other upstream 371854 6388543 ~ 6390927 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other upstream 863954 5862607 ~ 5898827 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other upstream 900468 5781944 ~ 5862313 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other upstream 1364895 5354332 ~ 5397886 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other upstream 1817901 4929471 ~ 4944880 (+)
G26692 NA other downstream 412129 7187940 ~ 7227437 (+)
akr1b1.1 akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878 other downstream 638125 7413936 ~ 7463373 (+)
ube2h ube2h,LOC107676921,LOC107690610,LOC105888480 other downstream 757101 7532912 ~ 7558489 (+)
col7a1l col7a1l,LOC107725642,LOC107744879,LOC107676908,LOC107555540,LOC107592433,LOC108435442 other downstream 1265621 8041432 ~ 8100749 (+)
G26993 NA other downstream 1361927 8137738 ~ 8138439 (+)

Expression


tnpo3(tnpo3,LOC107757279) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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tnpo3(tnpo3,LOC107757279) Expression in each Bioproject

Bar chart with 2 bars.
tnpo3(tnpo3,LOC107757279) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network