CI01000004_08976512_08980033 (TTPA)



Basic Information


Item Value
gene id CI01000004_08976512_08980033
gene name TTPA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 8976254 ~ 8980984 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000004_08976512_08980033.mRNA
CTATATAGATTATACAGAAGTCGTCAACAATTTATCTCAGTTTTGAACAAGGCGTGGGTCTAGTCTGTTTAATGGACGAGAAAGAATTAATTCAGTCTTAAAAGTTGGCTCGGTTAATGTTTGACGAAACTTTACATGTACAAAGGTGAAAAAACACTGGGCTATAGTTCTCATTGGGATGTGAGGGGCTCGTTCCCTGCCCCCTTTTACGTGAGACCGCTGCTCTGAGAAAATGACACTCGATCGGCTCGCGCAACTATGAAGTCTGAAGAAGTTGACAACATCGAAGAATTAAATAATTTACCTGTCGATTCTGTGCGGATTGCGCCATATTTGTCAGAACTGAAACAAAAAGCAGAAGCAGAAAGAAGTATTCGACACTTGGATTTGTCGAAAACATTTTTGATACGGTTTTTACAGGCGAGAGACTTTGATGTGGCACTGGCGTTCAAGCTGTTGATTAACTATCATAAATGGAGACAAGAATGTCCAGAAATAACAGCTGATCTGCGGCCATCATCCATTATAGGACTTCTCCGAAACAATTACCATGGAGTTTTGAGATCACGAGATGATGCTGGAAGTCAGTGGAACCCCAAAGAATTCACAGCTTATGAGGTTTTTCGTGTGAGCCTCATTACGTCCGAGTTGATTGTTCAAGAGTGGGAGACTCAAAGAAATGGACTCAAAGTGATTTTTGATCTCCAAGACTGGTGCTTTGCTCATGCCATGCAGATAAATCCTTCCTTAGCAAAAAAGATATCTGCTGTACTCACGGATTCCTTTCCTTTGAAAGTACGCGGGATCCACTTGATAAACGAGCCCATTTTTTTCCGTCCCGTTTTTGCCATGATCCGCCCATTTCTTCCAGACAAAATCAAACAACGGATTCACATGCATGGCTGTTCATATGTCCGAAGTCTCAGTAGTTACTTTCCGAAGGCTATCCTCCCTCCTATTTATGGAGGAACTGGACCCAGCATAGATGAAGTGTGCCAAGAGTGGACTGAGTTCATCATGCAGTCTGAAGACTATCTCTATAGGCTCTCTATACACTTAGGTGGAGGAGATGCTTCTCAGTTGTCCGCCTATGACTGATTAAAATGAAGGTACTTCTCCTCATGTGCTCTTTGTGCAGGTTACATACAGGTTAAATGAAATTAAGGATAAAATGCTGACATAAATTGTAAAGCATATTAGTGTAAACTTTTACTAAATAGGATTTTTTTTTCCTTTACTTTTTTCATTCCAGACTGGAAAAAAGTTGACATTCCCAGTTGTCACATTTGGATAATGTGATTTTATTGAATTCTATATCACACAGATATTCATTGCAAGTAATTGATATACCTCTGAATATACAATATAGCACTAGATATCAGATGTTTGTTGCTTTTAGAAGAAGGATTTCATAGGCACTTTAACATAACACAACTAGTGTAGAAAGTTGTATGTATCTGAAATATCAAAGTGCCTTTTTTACTTGTGAATTGTCATTGTTTTTATTGTATTATTTTCATAACAATTGACATAACTCAGGATGTTACATAAGTCTCTGTGTTTCTGGAAGTTACATATCAAGTTAAAATGAACTGTTTCATTATAAAAGTCAAATGATCTGTAAACTGCAGCATTCAGTAACCTTTGCTGTATTTTATTTAGTCACTCTAAGTGAGATTATAAAGTGGCACTTTGGTCTATTGCCTTTTGCTCTGACTCTTAAACAAATATAACCAGAGTCTAATGACCTTACTGGAACTCTTCATGTTTACAGATTTCCTTAAATGTGATTTTCTGAAACCATGTATATACCTCTTGTTCTGTTTATTGCACCTTTTTTGTCAGACAGTGTATCTAATGACAGAAGAAAATCACTGTTTTACATTAGTGGCTCATTATTTAATTGTGTTGTCATCACTTGTTATCCAACTACAATTGTTAATTTGTTTTTCAACTTTAATGTACATTACCATAATGATAAAAAGATCCACACAGACACATTACTACACAATTTGCAACTCAA
>TU32792
GGGGCTCGTTCCCTGCCCCCTTTTACGTGAGACCGCTGCTCTGAGAAAATGACACTCGATCGGCTCGCGCAACTATGAAGTCTGAAGAAGTTGACAACATCGAAGAATTAAATAATTTACCTGTCGATTCTGTGCGGATTGCGCCATATTTGTCAGAACTGAAACAAAAAGCAGAAGCAGAAAGAAGTATTCGACACTTGGATTTGTCGAAAACATTTTTGATACGGTTTTTACAGGCGAGAGACTTTGATGTGGCACTGGCGTTCAAGCTGTTGATTAACTATCATAAATGGAGACAAGAATGTCCAGAAATAACAGCTGATCTGCGGCCATCATCCATTATAGGACTTCTCCGAAACAATTACCATGGAGTTTTGAGATCACGAGATGATGCTGGAAGTCGAGTTTTAATCTATCGGATTGGCAAGTACATACACAAAAAAAAAAAAAAAATTGTTTCTGCCATATAACGGCGAATATCACAAATGCTCAAACACTGTTTTCAGGTCAGTGGAACCCCAAAGAATTCACAGCTTATGAGGTTTTTCGTGTGAGCCTCATTACGTCCGAGTTGATTGTTCAAGAGTGGGAGACTCAAAGAAATGGACTCAAAGTGATTTTTGATCTCCAAGACTGGTGCTTTGCTCATGCCATGCAGATAAATCCTTCCTTAGCAAAAAAGATATCTGCTGTACTCACGGATTCCTTTCCTTTGAAAGTACGCGGGATCCACTTGATAAACGAGCCCATTTTTTTCCGTCCCGTTTTTGCCATGATCCGCCCATTTCTTCCAGACAAAATCAAACAACGGATTCACATGCATGGCTGTTCATATGTCCGAAGTCTCAGTAGTTACTTTCCGAAGGCTATCCTCCCTCCTATTTATGGAGGAACTGGACCCAGCATAGATGAAGTGTGCCAAGAGTGGACTGAGTTCATCATGCAGTCTGAAGACTATCTCTATAGGCTCTCTATACACTTAGGTGGAGGAGATGCTTCTCAGTTGTCCGCCTATGACTGATTAAAATGAAGGTACTTCTCCTCATGTGCTCTTTGTGCAGGTTACATACAGGTTAAATGAAATTAAGGATAAAATGCTGACATAAATTGTAAAGCATATTAGTGTAAACTTTTACTAAATAGGATTTTTTTTTCCTTTACTTTTTTCATTCCAGACTGGAAAAAAGTTGACATTCCCAGTTGTCACATTTGGATAATGTGATTTTATTGAATTCTATATCACACAGATATTCATTGCAAGTAATTGATATACCTCTGAATATACAATATAGCACTAGATATCAGATGTTTGTTGCTTTTAGAAGAAGGATTTCATAGGCACTTTAACATAACACAACTAGTGTAGAAAGTTGTATGTATCTGAAATATCAAAGTGCCTTTTTTACTTGTGAATTGTCATTGTTTTTATTGTATTATTTTCATAACAATTGACATAACTCAGGATGTTACATAAGTCTCTGTGTTTCTGGAAGTTACATATCAAGTTAAAATGAACTGTTTCATTATAAAAGTCAAATGATCTGTAAACTGCAGCATTCAGTAACCTTTGCTGTATTTTATTTAGTCACTCTAAGTGAGATTATAAAGTGGCACTTTGGTCTATTGCCTTTTGCTCTGACTCTTAAACAAATATAACCAGAGTCTAATGACCTTACTGGAACTCTTCATGTTTACAGATTTCCTTAAATGTGATTTTCTGAAACCATGTATATACCTCTTGTTCTGTTTATTGCACCTTTTTTGTCAGACAGTGTATCTAATGACAGAAGAAAATCACTGTTTTACATTAGTGGCTCATTATTTAATTGTGTTGTCATCACTTGTTATCCAACTACAATTGTTAATTTGTTTTTCAACTTTAATGTACATTACCATAATGATAAAAAGATCCACACAGACACATTACTACACAATTTGCAACTCAAATAAACTTGGAGACTGGATAATCGCA
>TU32793
GGGGCTCGTTCCCTGCCCCCTTTTACGTGAGACCGCTGCTCTGAGAAAATGACACTCGATCGGCTCGCGCAACTATGAAGTCTGAAGAAGTTGACAACATCGAAGAATTAAATAATTTACCTGTCGATTCTGTGCGGATTGCGCCATATTTGTCAGAACTGAAACAAAAAGCAGAAGCAGAAAGAAGTATTCGACACTTGGATTTGTCGAAAACATTTTTGATACGGTTTTTACAGGCGAGAGACTTTGATGTGGCACTGGCGTTCAAGCTGTTGATTAACTATCATAAATGGAGACAAGAATGTCCAGAAATAACAGCTGATCTGCGGCCATCATCCATTATAGGACTTCTCCGAAACAATTACCATGGAGTTTTGAGATCACGAGATGATGCTGGAAGTCGAGTTTTAATCTATCGGATTGGCAAGTCAGTGGAACCCCAAAGAATTCACAGCTTATGAGGTTTTTCGTGTGAGCCTCATTACGTCCGAGTTGATTGTTCAAGAGTGGGAGACTCAAAGAAATGGACTCAAAGTGATTTTTGATCTCCAAGACTGGTGCTTTGCTCATGCCATGCAGATAAATCCTTCCTTAGCAAAAAAGATATCTGCTGTACTCACGGATTCCTTTCCTTTGAAAGTACGCGGGATCCACTTGATAAACGAGCCCATTTTTTTCCGTCCCGTTTTTGCCATGATCCGCCCATTTCTTCCAGACAAAATCAAACAACGGATTCACATGCATGGCTGTTCATATGTCCGAAGTCTCAGTAGTTACTTTCCGAAGGCTATCCTCCCTCCTATTTATGGAGGAACTGGACCCAGCATAGATGAAGTGTGCCAAGAGTGGACTGAGTTCATCATGCAGTCTGAAGACTATCTCTATAGGCTCTCTATACACTTAGGTGGAGGAGATGCTTCTCAGTTGTCCGCCTATGACTGATTAAAATGAAGACTGGAAAAAAGTTGACATTCCCAGTTGTCACATTTGGATAATGTGATTTTATTGAATTCTATATCACACAGATATTCATTGCAAGTAATTGATATACCTCTGAATATACAATATAGCACTAGATATCAGATGTTTGTTGCTTTTAGAAGAAGGATTTCATAGGCACTTTAACATAACACAACTAGTGTAGAAAGTTGTATGTATCTGAAATATCAAAGTGCCTTTTTTACTTGTGAATTGTCATTGTTTTTATTGTATTATTTTCATAACAATTGACATAACTCAGGATGTTACATAAGTCTCTGTGTTTCTGGAAGTTACATATCAAGTTAAAATGAACTGTTTCATTATAAAAGTCAAATGATCTGTAAACTGCAGCATTCAGTAACCTTTGCTGTATTTTATTTAGTCACTCTAAGTGAGATTATAAAGTGGCACTTTGGTCTATTGCCTTTTGCTCTGACTCTTAAACAAATATAACCAGAGTCTAATGACCTTACTGGAACTCTTCATGTTTACAGATTTCCTTAAATGTGATTTTCTGAAACCATGTATATACCTCTTGTTCTGTTTATTGCACCTTTTTTGTCAGACAGTGTATCTAATGACAGAAGAAAATCACTGTTTTACATTAGTGGCTCATTATTTAATTGTGTTGTCATCACTTGTTATCCAACTACAATTGTTAATTTGTTTTTCAACTTTAATGTACATTACCATAATGATAAAAAGATCCACACAGACACATTACTACACAATTTGCAACTCAAATAAACTTGGAGACTGGATAATCGCA

Function


symbol description
ttpa Predicted to enable lipid transfer activity; phosphatidylinositol bisphosphate binding activity; and vitamin E binding activity. Acts upstream of or within central nervous system development and chordate embryonic development. Predicted to be active in late endosome. Is expressed in several structures, including eye; immature eye; liver; neural tube; and tail bud. Human ortholog(s) of this gene implicated in familial isolated deficiency of vitamin E. Orthologous to human TTPA (alpha tocopherol transfer protein).

GO:

id name namespace
GO:0007417 central nervous system development biological_process

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000004_08976512_08980033.mRNA False 2023 mRNA 0.37 5 8976254 8980958
TU32792 False 1972 TUCP 0.37 4 8976438 8980984
TU32793 True 1750 TUCP 0.37 6 8976438 8980984
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Neighbor


gene id symbol gene type direction distance location
CI01000004_08947119_08949558 NA coding upstream 26610 8947119 ~ 8949644 (+)
CI01000004_08875722_08877149 GM11353, RPS8A, RPS8 coding upstream 98747 8875722 ~ 8877507 (+)
CI01000004_08866163_08873681 HECTD3 coding upstream 102458 8866034 ~ 8873796 (+)
CI01000004_08823382_08844233 NA coding upstream 131909 8822749 ~ 8844345 (+)
CI01000004_08806791_08812203 NA coding upstream 163692 8806791 ~ 8812562 (+)
CI01000004_08987501_08991239 NA coding downstream 6200 8987158 ~ 8991469 (+)
CI01000004_08996083_08997863 NA coding downstream 15125 8996083 ~ 8997863 (+)
CI01000004_09002274_09004879 IMPA1, IMPA1.3 coding downstream 21084 9002042 ~ 9005023 (+)
CI01000004_09173580_09175411 NA coding downstream 190794 9171752 ~ 9175657 (+)
CI01000004_09185502_09218621 NA coding downstream 203877 9184835 ~ 9218642 (+)
G28989 NA non-coding upstream 2616 8971829 ~ 8973638 (+)
G28929 NA non-coding upstream 5623 8967015 ~ 8970631 (+)
G28976 NA non-coding upstream 37079 8938966 ~ 8939175 (+)
G28975 NA non-coding upstream 37391 8936419 ~ 8938863 (+)
G28973 NA non-coding upstream 48764 8927145 ~ 8927490 (+)
G28992 NA non-coding downstream 2532 8983490 ~ 8983703 (+)
G28994 NA non-coding downstream 36847 9017805 ~ 9021061 (+)
G28999 NA non-coding downstream 43094 9024052 ~ 9024252 (+)
G29010 NA non-coding downstream 60126 9041084 ~ 9042246 (+)
G28980 NA non-coding downstream 228149 9209107 ~ 9211614 (+)
G28859 NA other upstream 376651 8599235 ~ 8599603 (+)
CI01000004_08414451_08436256 NA other upstream 525027 8414316 ~ 8439933 (+)
CI01000004_07654234_07655677 MRPL34 other upstream 1319871 7654234 ~ 7656383 (+)
CI01000004_06571261_06572539 SEP15 other upstream 2401833 6570771 ~ 6572667 (+)
G28302 NA other upstream 2474167 6470028 ~ 6502087 (+)
G30797 NA other downstream 1516418 10497376 ~ 10497788 (+)
G31710 NA other downstream 2656293 11637251 ~ 11642400 (+)
CI01000004_11666900_11667179 NA other downstream 2683815 11666900 ~ 11667659 (+)
G31865 NA other downstream 3211172 12192130 ~ 12197418 (+)
CI01000004_12646972_12652534 NA other downstream 3661796 12646838 ~ 12652570 (+)

Expression


CI01000004_08976512_08980033(TTPA) Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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CI01000004_08976512_08980033(TTPA) Expression in each Bioproject

Bar chart with 34 bars.
CI01000004_08976512_08980033(TTPA) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location