Item | Value |
---|---|
gene id | CI01000004_08976512_08980033 |
gene name | TTPA |
gene type | misc |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000004 |
NCBI id | null |
chromosome length | 17451736 |
location | 8976254 ~ 8980984 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
symbol | description |
---|---|
ttpa | Predicted to enable lipid transfer activity; phosphatidylinositol bisphosphate binding activity; and vitamin E binding activity. Acts upstream of or within central nervous system development and chordate embryonic development. Predicted to be active in late endosome. Is expressed in several structures, including eye; immature eye; liver; neural tube; and tail bud. Human ortholog(s) of this gene implicated in familial isolated deficiency of vitamin E. Orthologous to human TTPA (alpha tocopherol transfer protein). |
id | name | namespace |
---|---|---|
GO:0007417 | central nervous system development | biological_process |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
CI01000004_08976512_08980033.mRNA | False | 2023 | mRNA | 0.37 | 5 | 8976254 | 8980958 |
TU32792 | False | 1972 | TUCP | 0.37 | 4 | 8976438 | 8980984 |
TU32793 | True | 1750 | TUCP | 0.37 | 6 | 8976438 | 8980984 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000004_08947119_08949558 | NA | coding | upstream | 26610 | 8947119 ~ 8949644 (+) |
CI01000004_08875722_08877149 | GM11353, RPS8A, RPS8 | coding | upstream | 98747 | 8875722 ~ 8877507 (+) |
CI01000004_08866163_08873681 | HECTD3 | coding | upstream | 102458 | 8866034 ~ 8873796 (+) |
CI01000004_08823382_08844233 | NA | coding | upstream | 131909 | 8822749 ~ 8844345 (+) |
CI01000004_08806791_08812203 | NA | coding | upstream | 163692 | 8806791 ~ 8812562 (+) |
CI01000004_08987501_08991239 | NA | coding | downstream | 6200 | 8987158 ~ 8991469 (+) |
CI01000004_08996083_08997863 | NA | coding | downstream | 15125 | 8996083 ~ 8997863 (+) |
CI01000004_09002274_09004879 | IMPA1, IMPA1.3 | coding | downstream | 21084 | 9002042 ~ 9005023 (+) |
CI01000004_09173580_09175411 | NA | coding | downstream | 190794 | 9171752 ~ 9175657 (+) |
CI01000004_09185502_09218621 | NA | coding | downstream | 203877 | 9184835 ~ 9218642 (+) |
G28989 | NA | non-coding | upstream | 2616 | 8971829 ~ 8973638 (+) |
G28929 | NA | non-coding | upstream | 5623 | 8967015 ~ 8970631 (+) |
G28976 | NA | non-coding | upstream | 37079 | 8938966 ~ 8939175 (+) |
G28975 | NA | non-coding | upstream | 37391 | 8936419 ~ 8938863 (+) |
G28973 | NA | non-coding | upstream | 48764 | 8927145 ~ 8927490 (+) |
G28992 | NA | non-coding | downstream | 2532 | 8983490 ~ 8983703 (+) |
G28994 | NA | non-coding | downstream | 36847 | 9017805 ~ 9021061 (+) |
G28999 | NA | non-coding | downstream | 43094 | 9024052 ~ 9024252 (+) |
G29010 | NA | non-coding | downstream | 60126 | 9041084 ~ 9042246 (+) |
G28980 | NA | non-coding | downstream | 228149 | 9209107 ~ 9211614 (+) |
G28859 | NA | other | upstream | 376651 | 8599235 ~ 8599603 (+) |
CI01000004_08414451_08436256 | NA | other | upstream | 525027 | 8414316 ~ 8439933 (+) |
CI01000004_07654234_07655677 | MRPL34 | other | upstream | 1319871 | 7654234 ~ 7656383 (+) |
CI01000004_06571261_06572539 | SEP15 | other | upstream | 2401833 | 6570771 ~ 6572667 (+) |
G28302 | NA | other | upstream | 2474167 | 6470028 ~ 6502087 (+) |
G30797 | NA | other | downstream | 1516418 | 10497376 ~ 10497788 (+) |
G31710 | NA | other | downstream | 2656293 | 11637251 ~ 11642400 (+) |
CI01000004_11666900_11667179 | NA | other | downstream | 2683815 | 11666900 ~ 11667659 (+) |
G31865 | NA | other | downstream | 3211172 | 12192130 ~ 12197418 (+) |
CI01000004_12646972_12652534 | NA | other | downstream | 3661796 | 12646838 ~ 12652570 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
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