irf5 (LOC107577905,LOC107587141,LOC107725599,LOC107655585,LOC107694268,LOC107757280)


Basic Information

Item Value
gene id irf5
gene name LOC107577905,LOC107587141,LOC107725599,LOC107655585,LOC107694268,LOC107757280
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6776299 ~ 6784035 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236394.1
TCTCGTGCCTGTGAAGAGGCACAACATGGACACGAGAGAGTCCTGCTGGAGAGCTAAGATCAGTCGCTCCTCGGCCATTTGACCTGGCGGAGCTGAAAGGTTACACAGACGCGGACCCGACCTCACCTGATCCGTATGTGTGCGTCGGGTAAACGCTGAACCGAGCCCGAATCACCGTTTGGACACTCTTCAGTGCAGCTGACCAAAAGAGCAGCGTTCACCATTACGACTTCCTCCGAACTCCTCGTTTTCCAGCACCATGAGTGGTCAGCCACGGAGGATCCGCCTGAAGCCATGGCTGCTGGCACAGATTAACAGTGGGAAATACCCAGGACTGCACTGGCTCAATCAAGACCGCAGACTGTTCCGGATCCCATGGAGGCATGCCACCCGACATATGCCTACCCTGGAGGAAGAGAACACTATATTTAAGGCTTGGGCTCTGGAAACAGGCAAGTACCAAGAAGGAGTAGATGAGCCAGATCCAGCCAAATGGAAAGCCAACCTCCGCTGTGCCCTAAACAAAAGCCGAGAGTTCGGACTTCACTACGATGGCACTAAGGACACCCCAGTCCAGCCTTATAAGATCTATGAGGTGTGCGACCAGTCAGTCAATGGAGaTGCTGGAGacgatgatgaagaggagctGCAAAATTTTGTCAAACTCTCCATTGACCCTTCCAGCTACCCAGCATATCCTCCTAGAGTTGACGTCCCATTCACCTCTTCTATTGCTGACGGCTATAATCCCACCCACCGTAACCCTCCAATGAACCTCTTAGGAAAAACTGTCCATAACAACCCCAGTGGAGGTCCTCCTATGACCTCTCACCTCGCCCAGTCCAGCCCTGGACCTTCAGCTGGTGCTTTGACTGAATTTCCCAGTCACAGTGCTATCAAAGTTGAGCAGACGGCATTTCCCATTCATGCTGGGGGACTTCCGAACGGTCTGGGAATGGGGCCTGGGGTCATACGGCCCCCTGGTCTTCAAGATGTAGTCACTCATTCTGGAGGCCCTCCAGCCACAGTGGACAGCCCAATGCAGGAGGTGCCAGCTCAAGCGGAGAACCAGGTTCATCCCTGCATCTCAGAGTTGCTGAGCAGTCCGCACATGTTACCCTTGACTGACCTCGATATCAAGTTCCAGTACAGGGGTCGGACAGCTGGTTCTCTGACCGTCAGTAACCCTCAGGGTTGTAGAGTTTACTATGGTAACCTGGCGCCCACACCAGAGCAAGTAGAGCTGTTCGGTCCGGTAACACTGCAGCAGGTGCTGTTTCCAGGAACCGCTGAGATCCAGAACGAGAAGCAGAGGTTCTACACCGATCATCTGCTGGATGTGATGGACAGAGGACTGATTTTGGAGATCAGGGGACAAGATATCTACGCTATCAGGCTGTGCCAGTGTAAAGTATACTGGTCTGGTCCAGGTGTGCCCGAGCAGGGTCTGCCCAATCCAATGGAAAGAGAGATGAAGATCAGGGTCTTCAGTCTGAACAACTTCCTTCAGGgGCTCATTTTGTATCAGAAAGGAGAGACGCCCACTCCGCCACCCTTTGAGATCTACTTCTGCTTTGGTGAGGACTGGCCAGACAGGAAGCCCAAGGAGAAAAAGCTCATCATTGTCCAGGTTGTTCCAGTTGTTGCAAGAATCCTTACCGAGATGTTTTCAGGCGAGCTTTCATGGTCGACAGACAGCATTCGGTTGCAGATATCCAACCCTGACCTGAAGGACCAAACGGTGGAGCAGTTCAAAGAGCTCCACAGACTTTTACAGAGTCAAAACACGCACCCCACCTGGGCTCAAAACATCCACTAACTGAAAGAGGAACCAATTTTTTCCTTGACACACCGACGCCATCTTGTTAATTGCCGGCTCAGAATGGGGAGGTCCTTTTGAACACTGGAATATATAGGCGCCCTTTCTGATGCCATACTGAAAACATTTCCATTGGAGACCAAACTTGACATTTCTAATCCgtgtttttgtgtgcgtgttgtCTTCATGTAAACttatgtcttttaaaatgttatatttcaataaataccATTGCAGTATTTTAAA

Function

NR:

description
PREDICTED: interferon regulatory factor 6-like

GO: NA

KEGG:

id description
K09446 IRF5; interferon regulatory factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236394.1 True 2065 mRNA 0.51 10 6776299 6784035

Neighbor

gene id symbol gene type direction distance location
opn1sw1 opn1sw coding downstream 18111 6756012 ~ 6758188 (-)
mdm1 LOC107577767,LOC107655590,LOC107725562,LOC107694231 coding downstream 26049 6740893 ~ 6750250 (-)
il26 NA coding downstream 41570 6732341 ~ 6734729 (-)
LOC122343434 NA coding downstream 48466 6726585 ~ 6727833 (-)
ifng1r NA coding downstream 51896 6723047 ~ 6724403 (-)
akap14 NA coding upstream 8332 6792367 ~ 6793435 (-)
gxylt1b gxylt1,LOC107729836,LOC107582079,LOC107694260 coding upstream 150058 6934093 ~ 6940296 (-)
yaf2 yaf2,LOC108439407,LOC105018284,LOC107725590 coding upstream 156411 6940446 ~ 6950897 (-)
zcrb1 zcrb1 coding upstream 167857 6951892 ~ 6954640 (-)
prickle1b prickle1,LOC107725650,LOC107587146,LOC107694259,LOC107729853 coding upstream 186512 6970547 ~ 6992898 (-)
LOC122342911 NA non-coding downstream 387098 6377116 ~ 6389201 (-)
G26556 NA non-coding downstream 508885 6266832 ~ 6267414 (-)
G26541 NA non-coding downstream 541361 6186089 ~ 6234938 (-)
G26490 NA non-coding downstream 692089 6083590 ~ 6084210 (-)
G26487 NA non-coding downstream 698967 6077087 ~ 6077332 (-)
G26787 LOC107725579,LOC107655582 non-coding upstream 57939 6841974 ~ 6843849 (-)
G26790 LOC107725579,LOC107587145 non-coding upstream 61524 6845559 ~ 6908495 (-)
G26795 cntn1b,cntn1,LOC107581848,LOC107757284,LOC107694230,LOC107725506 non-coding upstream 76039 6860074 ~ 6862247 (-)
G26796 NA non-coding upstream 78688 6862723 ~ 6863382 (-)
G26799 NA non-coding upstream 99866 6883901 ~ 6956375 (-)
il22 NA other downstream 35558 6737641 ~ 6740741 (-)
msrb3 msrb3,LOC107725596,LOC107587134,LOC107757268,LOC107561995 other downstream 414815 6350491 ~ 6361484 (-)
arhgef39 arhgef39,LOC107725686,LOC107655603,LOC107757260,LOC107694288 other downstream 523651 6085892 ~ 6252648 (-)
mrps33 mrps33,LOC107694294,LOC107597883,LOC107725593,LOC107600452,LOC107655561 other downstream 836284 5938055 ~ 5940015 (-)
G26462 NA other downstream 862761 5906755 ~ 5913538 (-)
si:dkey-261e22.4 NA other upstream 430299 7214334 ~ 7220911 (-)
G26951 NA other upstream 771080 7555115 ~ 7558453 (-)
LOC122343432 NA other upstream 1463876 8247911 ~ 8249927 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other upstream 1676471 8460506 ~ 8468028 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 1729595 8513630 ~ 8517583 (-)

Expression


Co-expression Network