irf10 (LOC107568832,LOC107661994,LOC107754865)


Basic Information

Item Value
gene id irf10
gene name LOC107568832,LOC107661994,LOC107754865
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25554784 ~ 25567493 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236416.1
gctctatatttcagcgcagccctGTGAAACACATCAAactgagaaactaacagaatgcatagtcgaaaAACTGGATAAAAATGCGCATGAGGAGTAAATTCGGAAGAAACGGAGATGCTAATGATCAGACTTCAACCCACAGATTGATGGAAGACAGGTCGAAGCACATGCGACTGAGAGAATGGCTCATAGCGCAGATAGACAGTGGTAAATATGCTGGACTGAGCTGggaaaatgaagagaaaaccATGTTCAGGATTCCCTGGAAACACGCGGCCAAACAGGACTACAGGCAGAACCAGGACGCCGCGCTCTTTAAGGCATGGGCCATGTACAAGGGTAAATTTCAAGAGGGCAGGGACAAAGCTGACCCCTCTACATGGAAAACGCGTCTGCGCTGTGCCCTCAACAAGAGCACAGACTTTCAGGAGGTTCCTGAGCGCAGTCAGCTGGACATCTCTGAACCCTACAAGGTCTACCGGATACTGGACGACACAGGAAGAGCTGCAGAACCTGCTGGGGACAGTGACTGTAGCAAAGTCTTGAGAGAGATGCATCTGCCCATACAGCAGGACCTTACCTTCGGGGACTCAAACAAAGCTGATGGATGGAGTGtgaaTGGCAGGACGTATGCGTGTCCAAGTATAGGCACTAACTCCATTCCTCTATACCCTTCTCAGGTCCCCATAACTGACTGCCGGCTGGAGGTGTGTTTGTTCTATCACGGTAACCTGGTGCAGAACCTCATCACTACGTCTCCAGACGGCTGCTTCATTCTGCAGGGCTGCGCTCCAGTTGGGAACGAGCGCATTTATGGTCCTTGTGAAGCCAAGAAGGTCTTTTTCCCCCGTCCAGACATCATACAGCTGCCCACGGGCATCTCCGAAGCCATGGCCCGTCTCCTGCCGCACCTGGAGAAAGGTGTGCTGGTGTGGGTGGCCCCAGACGGTGTGTTCATCAAGCGCTTCTGCCAGGGCAGAGTGTACTGGGACGGCCCTCTGGCAGAGAACAGGCAGAAACCAAACAAACTGGAGAGAGAGCGGACCTGCAAACTCCTGGACATGACCATCTTCATGCAAGAGTTACAGAACCATCGGCAGGGCATTGGTCCTGAGCCACAGTACACAGTCAACCTTTGCTTCGGAGAGGAGTTCCCTGACCCCAGCCAGACAAAGACCAAGAAGCTCATTACTGCACGAGTGATTCCTCTGTTTGCTGTAGAGTGTCTCCGCAGGCATAATGCACCTAATAATGTGGAGCTGAAGCAATCACCGCCACACAGGAAAACCAATGAATAAACAGATCTCAATCAGAACAGCACACGTTTCTCTATCCCTGTGGAGGAATTCACCAACACcgacattaaaaatataaataataataataataataataataataataataatgtgtttgtatCTAACATCAGAAGAAAGGAGAAATCTACTATGCTAACCTTTTCATTGACTGTATTAAGCTTTATGTCCTTTATAgtcttattaatattactaaccATGATactgattaaattacattatgatttctttatctttttgtaaaattatgctttaaaaattaaattaaaatgaagagtTTGGTTAGTCTTGTGCA
>XM_043236417.1
gctctatatttcagcgcagccctGTGAAACACATCAAactgagaaactaacagaatgcatagtcgaaaAACTGGATAAAAATGCGCATGAGGAGTAAATTCGGAAGAAACGGAGATGCTAATGATCAGACTTCAACCCACAGATTGATGGAAGACAGGTCGAAGCACATGCGACTGAGAGAATGGCTCATAGCGCAGATAGACAGTGGTAAATATGCTGGACTGAGCTGggaaaatgaagagaaaaccATGTTCAGGATTCCCTGGAAACACGCGGCCAAACAGGACTACAGGCAGAACCAGGACGCCGCGCTCTTTAAGGCATGGGCCATGTACAAGGGTAAATTTCAAGAGGGCAGGGACAAAGCTGACCCCTCTACATGGAAAACGCGTCTGCGCTGTGCCCTCAACAAGAGCACAGACTTTCAGGAGGTTCCTGAGCGCAGTCAGCTGGACATCTCTGAACCCTACAAGGTCTACCGGATACTGGACGACACAGGAAGAGCTGCAGAACCTGCTGGGGACAGTGACTGTAGCAAAGTCTTGAGAGAGATGCATCTGCCCATACAGGACCTTACCTTCGGGGACTCAAACAAAGCTGATGGATGGAGTGtgaaTGGCAGGACGTATGCGTGTCCAAGTATAGGCACTAACTCCATTCCTCTATACCCTTCTCAGGTCCCCATAACTGACTGCCGGCTGGAGGTGTGTTTGTTCTATCACGGTAACCTGGTGCAGAACCTCATCACTACGTCTCCAGACGGCTGCTTCATTCTGCAGGGCTGCGCTCCAGTTGGGAACGAGCGCATTTATGGTCCTTGTGAAGCCAAGAAGGTCTTTTTCCCCCGTCCAGACATCATACAGCTGCCCACGGGCATCTCCGAAGCCATGGCCCGTCTCCTGCCGCACCTGGAGAAAGGTGTGCTGGTGTGGGTGGCCCCAGACGGTGTGTTCATCAAGCGCTTCTGCCAGGGCAGAGTGTACTGGGACGGCCCTCTGGCAGAGAACAGGCAGAAACCAAACAAACTGGAGAGAGAGCGGACCTGCAAACTCCTGGACATGACCATCTTCATGCAAGAGTTACAGAACCATCGGCAGGGCATTGGTCCTGAGCCACAGTACACAGTCAACCTTTGCTTCGGAGAGGAGTTCCCTGACCCCAGCCAGACAAAGACCAAGAAGCTCATTACTGCACGAGTGATTCCTCTGTTTGCTGTAGAGTGTCTCCGCAGGCATAATGCACCTAATAATGTGGAGCTGAAGCAATCACCGCCACACAGGAAAACCAATGAATAAACAGATCTCAATCAGAACAGCACACGTTTCTCTATCCCTGTGGAGGAATTCACCAACACcgacattaaaaatataaataataataataataataataataataataataatgtgtttgtatCTAACATCAGAAGAAAGGAGAAATCTACTATGCTAACCTTTTCATTGACTGTATTAAGCTTTATGTCCTTTATAgtcttattaatattactaaccATGATactgattaaattacattatgatttctttatctttttgtaaaattatgctttaaaaattaaattaaaatgaagagtTTGGTTAGTCTTGTGCA

Function

NR:

description
PREDICTED: interferon regulatory factor 4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236416.1 True 1611 mRNA 0.47 9 25554784 25567493
XM_043236417.1 False 1608 mRNA 0.47 9 25554784 25567493

Neighbor

gene id symbol gene type direction distance location
LOC122342354 NA coding downstream 57978 25487188 ~ 25496806 (-)
LOC122343881 NA coding downstream 167967 25386628 ~ 25386817 (-)
LOC122343859 NA coding downstream 168410 25386213 ~ 25386374 (-)
LOC122343878 NA coding downstream 169938 25384655 ~ 25384846 (-)
LOC122343871 NA coding downstream 170379 25384248 ~ 25384405 (-)
samhd1 samhd1,LOC107598800 coding upstream 43122 25610615 ~ 25625124 (-)
mtg2 mtg2,LOC107748997,LOC107754862 coding upstream 59114 25626607 ~ 25629375 (-)
kcnk15 LOC107569336,LOC107690089,LOC107706811 coding upstream 119084 25686577 ~ 25695667 (-)
LOC122342461 tcfl5 coding upstream 160601 25728094 ~ 25741253 (-)
si:ch73-181d5.4 NA coding upstream 174103 25741596 ~ 25761605 (-)
G31253 NA non-coding downstream 91240 25463153 ~ 25463544 (-)
G31250 NA non-coding downstream 117664 25436106 ~ 25437120 (-)
G31237 NA non-coding downstream 206139 25348374 ~ 25348645 (-)
G31229 NA non-coding downstream 239215 25315190 ~ 25315569 (-)
G31225 NA non-coding downstream 372440 25182013 ~ 25182344 (-)
G31335 NA non-coding upstream 67455 25634948 ~ 25635148 (-)
G31351 NA non-coding upstream 129937 25697430 ~ 25697757 (-)
G31352 NA non-coding upstream 134777 25702270 ~ 25703067 (-)
G31381 NA non-coding upstream 219887 25787380 ~ 25787875 (-)
G31385 NA non-coding upstream 245147 25812640 ~ 25813615 (-)
LOC122342407 LOC101068103,LOC105418166,LOC106522608,LOC108412963,LOC105419408,LOC108431938,LOC107395447,LOC106674638 other downstream 793998 24754056 ~ 24760786 (-)
G31134 NA other downstream 1057188 24304096 ~ 24497596 (-)
G31120 NA other downstream 1059606 24306501 ~ 24495178 (-)
LOC122342340 NA other downstream 1227521 24323970 ~ 24327263 (-)
G31091 kdm5a,LOC107710764,LOC107685890,LOC107693604 other downstream 1444111 24110224 ~ 24110673 (-)
G31394 NA other upstream 606206 26173699 ~ 26175249 (-)
G31400 LOC102197881 other upstream 756986 26324479 ~ 26325236 (-)
G31463 LOC107665166,LOC107752513,LOC107549841 other upstream 1798919 27366412 ~ 27367649 (-)
G31467 zbtb22b,LOC107752533,LOC107665126,LOC107666316,LOC107549842,LOC107554346,LOC107753716 other upstream 1811566 27379059 ~ 27382827 (-)
LOC122342454 kifc1,LOC107665178,LOC107753731,LOC107666336,LOC107549825,LOC107554333 other upstream 1816260 27383753 ~ 27389398 (-)

Expression


Co-expression Network