LOC122342558 (LOC107689220,LOC107755152)


Basic Information

Item Value
gene id LOC122342558
gene name LOC107689220,LOC107755152
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13313892 ~ 13318070 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236434.1
GCATGTTGCGGCaggaaatataataaataacttacCACAGTCATGGTGTAGTTAATTCAGAAACACTTATCACATCATGTTCAGCAGGCCTTgcaatcatttactcatctttGTTCCCCAAGTCTTCCTTGCCAAATTGTTTGCCAATAAATGTCAGTGTTGACTGAATGTTACGACTTACCTCAAAAAGGACGAGGAGTACCACAGAAGCAGCATAAATCTGGTCAACGTGACTCATTGTATTCCAAGTCATcgaaagtcattttaaaacagaCTACAGGCACTGAGAGGGCGGCGTGTCCCATGCTGTCTGTTCGGCCCAATCGAGCACTGGTGGACGAGAAATTTCAGATTGTCATAATGAATTTACTGCCAAATCAAAAGGTGACGCTACACTCTTTACATCAGTCAGAGGACAAGGACTTCTGGGAGGCATTTGGACACTACATCAGTGATGAACAGGGGACAGTGACAGTGGCCAAAGATGAAAGTTTGGGAGGGACCTATGAAGGCACAGAAGAGATGGGTTTGCTGTGGAGCATGAGGCCCATACCAGGAAGTCGACCTGGACTCAGGCTGCGTAAGATGAATATGCTCACACCGATGGTAGTTCACATCTCAGTATATGGTGGACATCTATCTCAAGGATTCAGGCAGCAAACACCACTGACAAGCAGTGTCATTGAGCGCTGGTATGTTGCACCAGGTGTTCAGAGGGAAAACATCAGGGAGAACGGAGTACGAGGAACTCTACTTCTTCCTCCAGgtccTGGGCCGTACCCAGGAGTGCTGGACCTATGGGGAGGAGGTGGTGGTTTGGTTGAGTATCGTTCTGGCTTGCTTGCATCTCACGGCTTTGCCTCCATGGCACTTGAATACCTCGGTCCAGAAGAGCTGAGAACAGCTGATGTCGATGTGTCATACTTTGAGAAAGCATATCAGATCCTGCAGAATCATCCGAAGGTACAGAGGGACCGTGTGGCAATGCTTGGACTGTCTTTTGGAAGTGCCATCACACTCAGTATGGCAGCCTACTCCAAAGTCATCGAGCTCCGGTGCTGTGTGTGTATCAGCGGAAGTCATGTGTTTGCTGTAGATAAATCCATCTTTGAAGTCTTTGAGGAAATGAAAAAGTATATAAATAGGGTACATGTGAATGAAGAGAATCAGGTAGCATACAGAGACCTCTTCTTGCCCATTCCCTCAGACCCAGCTCTCAAAGTGGATGTTGGGAGAATAAAGTGTCCTCTTTTGTTGGTGAATGCTGATGATGATCAGAGCTGGGCTTCTGTTGAATCTGCTGAAGATATGGAGATGATGATGGAGAAAGCAGGAAATCGACACCTGTTGACGGCCCTGACGTATCCTGGCGCAGGTCATCTGATCGAACCTCCGTACTCTCCTCACGTCAGAGCATCTAACTTCATCCTGCAGGATATGAAGGAGAAgaTTGTCATGCTGTGGGGTGGACAGACGAAACCACACGCATACGCTCAAGAGGACGCATGGGAGAAGATTTTAGCATTTCTGCGGCAGCACCTATACTTCACTTCAAACTCTGCCGTAAAAGCCAAACTGTAGTTGTGTCAtcctttatttcaaataatgtcGATAATGATCGCCAGCATTTGTTACTTTTCACCTTGGTATCTGTAGGACATAAAAATGGACAGTAAGTATTGTAATGATGTATAGAGATTATAATGACAATAACTTAAAGCACAGGGTATATTGGGCAGTACTTTTTTGATACactacttcattttttttacccaCTACTGCAAAGTTGAAATTAATGCATTGcctgattttaattttgtttaaaatttattttgataatctaTTTTCCAAAgtgatttttgtaaatgtcacCTAATTATTTTGAACGGAAGAACTGGTGCAAAAGccatcagattttaaaataggaATGTAATGTAGGTCAATTaccttcaaaatgtaatatgtatgtTTGCTATGTTCAatgtcatgtcatttttaaagttgtggatgaataaatatgctattttaaaaaga
>XM_043236435.1
TTATTCATTATTGCAAGTATTTCTATGACAATCTGACTAGATCATCTCTCTTCCGACTATTTTCCTTTCGGCTGGGTCTCAAACACGGCAGAGCACAACTTTAGTTCATACATTTCTGTCCCGGCGATATTTGGATCAGTTTAATATCTAAAACTCTTCCCAGAAGAAACACCTGGTCTAAACACCTGGACTGTATCATGTTGGCACCTGTCAGgaCTACAGGCACTGAGAGGGCGGCGTGTCCCATGCTGTCTGTTCGGCCCAATCGAGCACTGGTGGACGAGAAATTTCAGATTGTCATAATGAATTTACTGCCAAATCAAAAGGTGACGCTACACTCTTTACATCAGTCAGAGGACAAGGACTTCTGGGAGGCATTTGGACACTACATCAGTGATGAACAGGGGACAGTGACAGTGGCCAAAGATGAAAGTTTGGGAGGGACCTATGAAGGCACAGAAGAGATGGGTTTGCTGTGGAGCATGAGGCCCATACCAGGAAGTCGACCTGGACTCAGGCTGCGTAAGATGAATATGCTCACACCGATGGTAGTTCACATCTCAGTATATGGTGGACATCTATCTCAAGGATTCAGGCAGCAAACACCACTGACAAGCAGTGTCATTGAGCGCTGGTATGTTGCACCAGGTGTTCAGAGGGAAAACATCAGGGAGAACGGAGTACGAGGAACTCTACTTCTTCCTCCAGgtccTGGGCCGTACCCAGGAGTGCTGGACCTATGGGGAGGAGGTGGTGGTTTGGTTGAGTATCGTTCTGGCTTGCTTGCATCTCACGGCTTTGCCTCCATGGCACTTGAATACCTCGGTCCAGAAGAGCTGAGAACAGCTGATGTCGATGTGTCATACTTTGAGAAAGCATATCAGATCCTGCAGAATCATCCGAAGGTACAGAGGGACCGTGTGGCAATGCTTGGACTGTCTTTTGGAAGTGCCATCACACTCAGTATGGCAGCCTACTCCAAAGTCATCGAGCTCCGGTGCTGTGTGTGTATCAGCGGAAGTCATGTGTTTGCTGTAGATAAATCCATCTTTGAAGTCTTTGAGGAAATGAAAAAGTATATAAATAGGGTACATGTGAATGAAGAGAATCAGGTAGCATACAGAGACCTCTTCTTGCCCATTCCCTCAGACCCAGCTCTCAAAGTGGATGTTGGGAGAATAAAGTGTCCTCTTTTGTTGGTGAATGCTGATGATGATCAGAGCTGGGCTTCTGTTGAATCTGCTGAAGATATGGAGATGATGATGGAGAAAGCAGGAAATCGACACCTGTTGACGGCCCTGACGTATCCTGGCGCAGGTCATCTGATCGAACCTCCGTACTCTCCTCACGTCAGAGCATCTAACTTCATCCTGCAGGATATGAAGGAGAAgaTTGTCATGCTGTGGGGTGGACAGACGAAACCACACGCATACGCTCAAGAGGACGCATGGGAGAAGATTTTAGCATTTCTGCGGCAGCACCTATACTTCACTTCAAACTCTGCCGTAAAAGCCAAACTGTAGTTGTGTCAtcctttatttcaaataatgtcGATAATGATCGCCAGCATTTGTTACTTTTCACCTTGGTATCTGTAGGACATAAAAATGGACAGTAAGTATTGTAATGATGTATAGAGATTATAATGACAATAACTTAAAGCACAGGGTATATTGGGCAGTACTTTTTTGATACactacttcattttttttacccaCTACTGCAAAGTTGAAATTAATGCATTGcctgattttaattttgtttaaaatttattttgataatctaTTTTCCAAAgtgatttttgtaaatgtcacCTAATTATTTTGAACGGAAGAACTGGTGCAAAAGccatcagattttaaaataggaATGTAATGTAGGTCAATTaccttcaaaatgtaatatgtatgtTTGCTATGTTCAatgtcatgtcatttttaaagttgtggatgaataaatatgctattttaaaaaga

Function

NR:

description
PREDICTED: bile acid-CoA:amino acid N-acyltransferase-like isoform X2

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0016790 thiolester hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236434.1 True 2034 mRNA 0.43 11 13314346 13318070
XM_043236435.1 False 1976 mRNA 0.43 12 13313892 13318070

Neighbor

gene id symbol gene type direction distance location
LOC122342560 si:dkey-183c16.7,LOC107689220,LOC107755152 coding upstream 3474 13306353 ~ 13310418 (+)
il15ra NA coding upstream 11938 13292988 ~ 13301954 (+)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 coding upstream 58995 13238214 ~ 13254897 (+)
sfmbt2 sfmbt2,LOC107675978 coding upstream 86568 13190604 ~ 13227324 (+)
itih5 itih5,LOC107675976,LOC107555826 coding upstream 138094 13165740 ~ 13175798 (+)
lamb1b lamb1b,LOC107755155,LOC107689224 coding downstream 8295 13326365 ~ 13345061 (+)
metap2a metap2a,LOC107689230,LOC107597011,LOC107755160,LOC106576295,LOC100194705 coding downstream 105168 13423238 ~ 13432687 (+)
depdc4 si:ch211-265o23.1,LOC107755163,LOC107689232,LOC107597010 coding downstream 122566 13440636 ~ 13446821 (+)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding downstream 128887 13446957 ~ 13458895 (+)
tnni1d tnni1d,LOC107597014,LOC108280151,LOC103374597 coding downstream 179670 13497740 ~ 13501524 (+)
G28256 NA non-coding upstream 81909 13231664 ~ 13231983 (+)
G28255 NA non-coding upstream 83338 13230162 ~ 13230554 (+)
G28254 NA non-coding upstream 85291 13228381 ~ 13228601 (+)
G28246 NA non-coding upstream 124125 13189496 ~ 13189767 (+)
G28233 NA non-coding upstream 135915 13176963 ~ 13177977 (+)
G28295 NA non-coding downstream 119866 13437936 ~ 13440022 (+)
G28298 NA non-coding downstream 149334 13467404 ~ 13470135 (+)
G28312 NA non-coding downstream 192786 13510856 ~ 13513593 (+)
LOC122343375 NA non-coding downstream 198560 13516630 ~ 13520457 (+)
G28446 NA non-coding downstream 439897 13757967 ~ 13760112 (+)
kin kin,LOC102791470 other upstream 159534 13150736 ~ 13154358 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 1498587 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 1622763 11689314 ~ 11691129 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 1897665 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 1979436 11331545 ~ 11334456 (+)
G28249 LOC107689220,LOC107755152 other downstream 5218 13323288 ~ 13530631 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other downstream 87859 13405929 ~ 13433606 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 564824 13882894 ~ 13961098 (+)
trmu trmu other downstream 667447 13985517 ~ 13991772 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other downstream 859360 14177430 ~ 14294618 (+)

Expression


Co-expression Network