LOC122342560 (si:dkey-183c16.7,LOC107689220,LOC107755152)


Basic Information

Item Value
gene id LOC122342560
gene name si:dkey-183c16.7,LOC107689220,LOC107755152
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13306353 ~ 13310418 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236443.1
ACATTGCTGTCCCGGCGCTGTTTGGATCAGTCTAACATCTGAAACCCTTCCCAGAAGAAACACCCGGTCTAAACCTATCGTACTGTATCATGCTGGCACCTGTCGGgaCTATGGGCACTGAGAGGGTGGCGTGTCCCTTGCTGTCTGTTCGGCCCAATCGAGCACTGGTGGACGAGAAATTTCAGATTGTCATAATGAATTTACTGCCAAATCAAAAGGTGACGCTACACTCTTTACATCAGTCAGAGGACAAGGACTTCTGGGAGGCATTTGGACACTACATCAGTGATGAACAGGGGACAGTGACAGTGGCCAAAGATGAAAGTTTGGGAGGGACCTATGAAGGCACAGAAGAGATGGGTTTGCTGTGGAGCATGAGGCCCATACCAGGAAGTCGACCCGGACTCAGGCTGCGTAAGATGAATATGCTCACACCGATGGTAGTTCACATCTCAGTATATGGTGGACATCTATCTCAAGGATTCAGGCAGCAAACACCACTGACAAGCAGTGTCATTGAGCGCTGGTATGTTGCACCAGGTGTTCAGAGGGCAAACATCAGGGAGAACGGAGTACGAGGAACTCTATTTCTTCCTccaggtccTGGGCCGTACCCAGGAGTGCTGGACCTATGGGGAGGAGGTGGTGGTTTAGTTGAGTATCGTTCTGGCTTGCTTGCATCTCACGGCTTTGCCTCCATGGCACTTGAATACCTCGCTCCAGAAGAGCTGAGAACAGCTGATGTCGATGTGTCATACTTTGAGAAAGCATACCAGATCCTGCAGAATCATCCGAAGGTACAGAGGGACCGTGTGGCAATGCTTGGACTGTCTTTTGGAAGTGCCATCACACTCAGTATGGCAGCCTACTCCAAAGTCATCGAGCCccagtgctgtgtgtgtatcAGCGGAAGTCATGTGTTTCCTGTAGATAAATCCATCTTTGAAGTCTTTGAGGAAATGAAAAAGAATATAAATAGGGTACATGTGAATGAAGAGAATCAGGTAGTACACAGAGACCTCATCTTGCCCATTCCCTCAGACCCAGCTCTCAAAGTGGATGTTGGGAGAATAAAGTGTCCTCTTTTGTTGGTGAATGCTGGTGATGATCAGAACTGGGCTTCTGTTGAATCTGCTGAAGATATGGAGATGATGATGGAGAAAGCAGGAAATCGACACCTGTTGACGGTCCTGACGTATCCTGGCGCAGGTCATCTGATCGAACCTCCGTACTCTCCTCACGTCAGAGCATCTAACTTCATCCTGCAGGATATGAAGGAGAAgaTTGTCATGCTGTGGGGTGGACAGACGAAACCACACGCATACGCTCAAGAGGACGCATGGGAGAAGATTTTAGCATTTCTGCAACAGCACCTATACTTCACTTCAAACTCTGCCGTAAAAGCCAAACTGTAGTTGTGTCAtcctttatttcaaataatgtcGATAATGATCGCCAGCATTTGTTACTTTTCACCTTGCTATCTGTAGGACATAAAAATGGACAGTAAGTATTGTAATGATGTATAGAGATTATAATGACAATAACTTAAAGCACAGGGTATATTGGGCAGTACTTTTTTGATACactacttcatttttttttttacccactACTGCAAAGTTGAAATTAATGCATTGcctgattttaattttgtttaaaatttattttttgataatcTATTTTCCAAAGTGATTATTGTAAATGTCACCTAATTATTTTGAACGGAAGAACTGGTGCAAAAGccatcagattttaaaataggaatgtaatgtaatgtaggCCAATTatcttcaaaatgtaatatgtatgtTTGCTATGTTCAGTGTCATGTCACTTTTTAAAGTTGTGGATGaataaatatgctattttaa

Function

NR:

description
PREDICTED: bile acid-CoA:amino acid N-acyltransferase-like isoform X1

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0016790 thiolester hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236443.1 True 1874 mRNA 0.44 11 13306353 13310418

Neighbor

gene id symbol gene type direction distance location
il15ra NA coding upstream 4399 13292988 ~ 13301954 (+)
prkcq prkcq,LOC107748461,LOC107675981,LOC107555829 coding upstream 51456 13238214 ~ 13254897 (+)
sfmbt2 sfmbt2,LOC107675978 coding upstream 79029 13190604 ~ 13227324 (+)
itih5 itih5,LOC107675976,LOC107555826 coding upstream 130555 13165740 ~ 13175798 (+)
LOC122342787 si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107710683,LOC107556776 coding upstream 1038597 12170127 ~ 12267756 (+)
LOC122342558 LOC107689220,LOC107755152 coding downstream 3474 13313892 ~ 13318070 (+)
lamb1b lamb1b,LOC107755155,LOC107689224 coding downstream 15947 13326365 ~ 13345061 (+)
metap2a metap2a,LOC107689230,LOC107597011,LOC107755160,LOC106576295,LOC100194705 coding downstream 112820 13423238 ~ 13432687 (+)
depdc4 si:ch211-265o23.1,LOC107755163,LOC107689232,LOC107597010 coding downstream 130218 13440636 ~ 13446821 (+)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding downstream 136539 13446957 ~ 13458895 (+)
G28256 NA non-coding upstream 74370 13231664 ~ 13231983 (+)
G28255 NA non-coding upstream 75799 13230162 ~ 13230554 (+)
G28254 NA non-coding upstream 77752 13228381 ~ 13228601 (+)
G28246 NA non-coding upstream 116586 13189496 ~ 13189767 (+)
G28233 NA non-coding upstream 128376 13176963 ~ 13177977 (+)
G28267 NA non-coding downstream 2516 13312934 ~ 13321116 (+)
G28295 NA non-coding downstream 127518 13437936 ~ 13440022 (+)
G28298 NA non-coding downstream 156986 13467404 ~ 13470135 (+)
G28312 NA non-coding downstream 200438 13510856 ~ 13513593 (+)
LOC122343375 NA non-coding downstream 206212 13516630 ~ 13520457 (+)
kin kin,LOC102791470 other upstream 151995 13150736 ~ 13154358 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 1491048 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 1615224 11689314 ~ 11691129 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other upstream 1890126 11386130 ~ 11416227 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other upstream 1971897 11331545 ~ 11334456 (+)
G28249 LOC107689220,LOC107755152 other downstream 12870 13323288 ~ 13530631 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other downstream 95511 13405929 ~ 13433606 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 572476 13882894 ~ 13961098 (+)
trmu trmu other downstream 675099 13985517 ~ 13991772 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other downstream 867012 14177430 ~ 14294618 (+)

Expression


Co-expression Network