rbm17 (rbm17,LOC107755150,LOC107748463,LOC107663450)


Basic Information

Item Value
gene id rbm17
gene name rbm17,LOC107755150,LOC107748463,LOC107663450
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13281183 ~ 13301329 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236444.1
GCGGGAGGAGCTTGTCGCAAGCGTCCACTTCTTGGGGGGTGCCTGGATTTTTGTAAACGACGGAGCCCTCTGTGGCGTTTTCAGCTGTCCTGTTTGATTGAGCCGAACTGAGTTCAGATCCAATGACTGATACAGagtttTTGGTTGGCAAGAAGGTAAAATGTCTTTATACGATGATTTGGGGGTCGCGACAAGCGACACTAAAACAGAAGGATGGTCTAAAAACTTCAAACTGCTTCAGTCTCAGTTGAAAGTGAAGAAAGCTGCACTGACACAAGCAAAGACCCAGAGGATGAGACAGTCCAATGTTCTCGCTCCGGTTATCGATCTGAAGAGGGGAAGTGCTGTAGATGACAGACAGATCTCTGATACGCCTCCACACATCGCTGCAGGGATGAAGGACTCGGCGTCAGCTGGGTTTTCATCCGGTGATGTGCTGATCCCATTGGCTGATGAGTATGACCCCATGTTTCCCAACGACTATGAGAAAGTGGTAAAGAGACATAGAGAAGAAcgacaaagacagagagaacagGAGCGACAGAAAGAAATTGAGGAGCGAGAGAAGAAACGTAAAGAGAGGCACGAAGGAGGTGCAGCGCCAAGCGGATTTTCACGTTTCCCAACAGAAGGTGAATCGGACGAGGAGGAGGActatgagagagaaaagaggaagaggaGTTTGGGAGGAGCCGCCATCGCCCCGCCGACATCACTAGTGGAGCGAGACTCGACGTATTCGTATGATGAAGAGGGTCGGCAGAGGTCGAAAGCAGCAATCCCACCCCCTATTTTTGATGACTCCGATAGACCGCGGTCTCCCCCGGGACCAACGAACTCATTCCTGGCCAACATGGGcggTACTGTGGCTCATAAAATCATGCAGAAGTACGGATTCAGAGATGGACAGGGACTGGGGAAGCACGAGCAGGGGTTGAGCACGGCCCTTTCGGTGGAGAAAACCAGCAAGCGCGGGGGCAAGATCATTATTGGAGACTCGACGGAAAAGAcatcAGGATCCAGTCAGAATGTGGCTGATCCACATGGCTCTAATTCAGCGGACGCCTCGAAGAAAAACGAGACCAACCCTCTTACAGAGATTCTCAAATGTCCCACGAAAGTGGTGCTGCTGCGGaacATGGTTGGCCGTGGAGAAGTGGATGAAGACCTGGAAGCAGAGACTAAAGAAGAGTGTGAGAAGTACGGCAAAGTCGTCAAGTGCGTCATCTTCGAGatcTCTGGAGTTTCCGACGACGAAGCCGTCCGCATTTTCCTGGAGTTCGAACGAGTCGAATCGGCCATTAAAGCCGTGGTGGATCTAAATGGGCGCTACTTTGGAGGTCGCGTGGTGAAGGCCTGTTTTTATAACTTGGACAAGTTTCGTGTCTTAGACCTGGGAGATCAGGTGTGAGTGGGAGAACCAGACCCGCGCAACCAGGAGAGAATAAACACCAGGGGGAAGTAATCGGTCTTTCTGTAAATAGCATGAGTAATTTTATACACCCTTGTAAAACATTAGTTTATGTGCCCCTTTTCCGCAATACGTTTTGTAACGAAAATTTAATTTGCTCTTTTGTGAATTGCTTCTAGTCTCTCTCACACCTCACGGTTAAAATATCCTTTTGTCCTTGTGATTTAAGATGTGACGAAGAtcccagaaataaaaaaacgctTTTGGGAGAATAA
>XM_043236445.1
CGCGTTTGGACGTGGTTGGTGACGTCATCCGTCCGCGACCTCACACTGGTAGCATGCTATGCTAACCGACAGAGCAAAACCAGTAGagggtttattttctttaaagagtttTTGGTTGGCAAGAAGGTAAAATGTCTTTATACGATGATTTGGGGGTCGCGACAAGCGACACTAAAACAGAAGGATGGTCTAAAAACTTCAAACTGCTTCAGTCTCAGTTGAAAGTGAAGAAAGCTGCACTGACACAAGCAAAGACCCAGAGGATGAGACAGTCCAATGTTCTCGCTCCGGTTATCGATCTGAAGAGGGGAAGTGCTGTAGATGACAGACAGATCTCTGATACGCCTCCACACATCGCTGCAGGGATGAAGGACTCGGCGTCAGCTGGGTTTTCATCCGGTGATGTGCTGATCCCATTGGCTGATGAGTATGACCCCATGTTTCCCAACGACTATGAGAAAGTGGTAAAGAGACATAGAGAAGAAcgacaaagacagagagaacagGAGCGACAGAAAGAAATTGAGGAGCGAGAGAAGAAACGTAAAGAGAGGCACGAAGGAGGTGCAGCGCCAAGCGGATTTTCACGTTTCCCAACAGAAGGTGAATCGGACGAGGAGGAGGActatgagagagaaaagaggaagaggaGTTTGGGAGGAGCCGCCATCGCCCCGCCGACATCACTAGTGGAGCGAGACTCGACGTATTCGTATGATGAAGAGGGTCGGCAGAGGTCGAAAGCAGCAATCCCACCCCCTATTTTTGATGACTCCGATAGACCGCGGTCTCCCCCGGGACCAACGAACTCATTCCTGGCCAACATGGGcggTACTGTGGCTCATAAAATCATGCAGAAGTACGGATTCAGAGATGGACAGGGACTGGGGAAGCACGAGCAGGGGTTGAGCACGGCCCTTTCGGTGGAGAAAACCAGCAAGCGCGGGGGCAAGATCATTATTGGAGACTCGACGGAAAAGAcatcAGGATCCAGTCAGAATGTGGCTGATCCACATGGCTCTAATTCAGCGGACGCCTCGAAGAAAAACGAGACCAACCCTCTTACAGAGATTCTCAAATGTCCCACGAAAGTGGTGCTGCTGCGGaacATGGTTGGCCGTGGAGAAGTGGATGAAGACCTGGAAGCAGAGACTAAAGAAGAGTGTGAGAAGTACGGCAAAGTCGTCAAGTGCGTCATCTTCGAGatcTCTGGAGTTTCCGACGACGAAGCCGTCCGCATTTTCCTGGAGTTCGAACGAGTCGAATCGGCCATTAAAGCCGTGGTGGATCTAAATGGGCGCTACTTTGGAGGTCGCGTGGTGAAGGCCTGTTTTTATAACTTGGACAAGTTTCGTGTCTTAGACCTGGGAGATCAGGTGTGAGTGGGAGAACCAGACCCGCGCAACCAGGAGAGAATAAACACCAGGGGGAAGTAATCGGTCTTTCTGTAAATAGCATGAGTAATTTTATACACCCTTGTAAAACATTAGTTTATGTGCCCCTTTTCCGCAATACGTTTTGTAACGAAAATTTAATTTGCTCTTTTGTGAATTGCTTCTAGTCTCTCTCACACCTCACGGTTAAAATATCCTTTTGTCCTTGTGATTTAAGATGTGACGAAGAtcccagaaataaaaaaacgctTTTGGGAGAATAA
>XM_043236446.1
CACACTGGTAGCATGCTATGCTAACCGACAGAGCAAAACCAGTAGagggtttattttctttaaaggtGTGTTTCTGACTTTATTCGTTTGACAGTTAAAGTGGATTAGTGATTTGAGagtttTTGGTTGGCAAGAAGGTAAAATGTCTTTATACGATGATTTGGGGGTCGCGACAAGCGACACTAAAACAGAAGGATGGTCTAAAAACTTCAAACTGCTTCAGTCTCAGTTGAAAGTGAAGAAAGCTGCACTGACACAAGCAAAGACCCAGAGGATGAGACAGTCCAATGTTCTCGCTCCGGTTATCGATCTGAAGAGGGGAAGTGCTGTAGATGACAGACAGATCTCTGATACGCCTCCACACATCGCTGCAGGGATGAAGGACTCGGCGTCAGCTGGGTTTTCATCCGGTGATGTGCTGATCCCATTGGCTGATGAGTATGACCCCATGTTTCCCAACGACTATGAGAAAGTGGTAAAGAGACATAGAGAAGAAcgacaaagacagagagaacagGAGCGACAGAAAGAAATTGAGGAGCGAGAGAAGAAACGTAAAGAGAGGCACGAAGGAGGTGCAGCGCCAAGCGGATTTTCACGTTTCCCAACAGAAGGTGAATCGGACGAGGAGGAGGActatgagagagaaaagaggaagaggaGTTTGGGAGGAGCCGCCATCGCCCCGCCGACATCACTAGTGGAGCGAGACTCGACGTATTCGTATGATGAAGAGGGTCGGCAGAGGTCGAAAGCAGCAATCCCACCCCCTATTTTTGATGACTCCGATAGACCGCGGTCTCCCCCGGGACCAACGAACTCATTCCTGGCCAACATGGGcggTACTGTGGCTCATAAAATCATGCAGAAGTACGGATTCAGAGATGGACAGGGACTGGGGAAGCACGAGCAGGGGTTGAGCACGGCCCTTTCGGTGGAGAAAACCAGCAAGCGCGGGGGCAAGATCATTATTGGAGACTCGACGGAAAAGAcatcAGGATCCAGTCAGAATGTGGCTGATCCACATGGCTCTAATTCAGCGGACGCCTCGAAGAAAAACGAGACCAACCCTCTTACAGAGATTCTCAAATGTCCCACGAAAGTGGTGCTGCTGCGGaacATGGTTGGCCGTGGAGAAGTGGATGAAGACCTGGAAGCAGAGACTAAAGAAGAGTGTGAGAAGTACGGCAAAGTCGTCAAGTGCGTCATCTTCGAGatcTCTGGAGTTTCCGACGACGAAGCCGTCCGCATTTTCCTGGAGTTCGAACGAGTCGAATCGGCCATTAAAGCCGTGGTGGATCTAAATGGGCGCTACTTTGGAGGTCGCGTGGTGAAGGCCTGTTTTTATAACTTGGACAAGTTTCGTGTCTTAGACCTGGGAGATCAGGTGTGAGTGGGAGAACCAGACCCGCGCAACCAGGAGAGAATAAACACCAGGGGGAAGTAATCGGTCTTTCTGTAAATAGCATGAGTAATTTTATACACCCTTGTAAAACATTAGTTTATGTGCCCCTTTTCCGCAATACGTTTTGTAACGAAAATTTAATTTGCTCTTTTGTGAATTGCTTCTAGTCTCTCTCACACCTCACGGTTAAAATATCCTTTTGTCCTTGTGATTTAAGATGTGACGAAGAtcccagaaataaaaaaacgctTTTGGGAGAATAA
>XM_043236447.1
GCGGGAGGAGCTTGTCGCAAGCGTCCACTTCTTGGGGGGTGCCTGGATTTTTGTAAACGACGGAGCCCTCTGTGGCGTTTTCAGCTGTCCTGTTTGATTGAGCCGAACTGAGTTCAGATCCAATGACTGATACAGagtttTTGGTTGGCAAGAAGGTAAAATGTCTTTATACGATGATTTGGGGGTCGCGACAAGCGACACTAAAACAGAAGGATGGTCTAAAAACTTCAAACTGCTTCAGTCTCAGTTGAAAGTGAAGAAAGCTGCACTGACACAAGCAAAGACCCAGAGGATGAGACAGTCCAATGTTCTCGCTCCGGTTATCGATCTGAAGAGGGGAAGTGCTGTAGATGACAGACAGATCTCTGATACGCCTCCACACATCGCTGCAGGGATGAAGGACTCGGCGTCAGCTGGGTTTTCATCCGGTGATGTGCTGATCCCATTGGCTGATGAGTATGACCCCATGTTTCCCAACGACTATGAGAAAGTGGTAAAGAGACATAGAGAAGAAcgacaaagacagagagaacagGAGCGACAGAAAGAAATTGAGGAGCGAGAGAAGAAACGTAAAGAGAGGCACGAAGGAGGTGCAGCGCCAAGCGGATTTTCACGTTTCCCAACAGAAGGTGAATCGGACGAGGAGGAGGActatgagagagaaaagaggaagaggaGTTTGGGAGGAGCCGCCATCGCCCCGCCGACATCACTAGTGGAGCGAGACTCGACGTATTCGTATGATGAAGAGGGTCGGCAGAGGTCGAAAGCAGCAATCCCACCCCCTATTTTTGATGACTCCGATAGACCGCGGTCTCCCCCGGGACCAACGAACTCATTCCTGGCCAACATGGGcggTACTGTGGCTCATAAAATCATGCAGAAGTACGGATTCAGAGATGGACAGGGACTGGGGAAGCACGAGCAGGGGTTGAGCACGGCCCTTTCGGTGGAGAAAACCAGCAAGCGCGGGGGCAAGATCATTATTGGAGACTCGACGGAAAAGACGGACGCCTCGAAGAAAAACGAGACCAACCCTCTTACAGAGATTCTCAAATGTCCCACGAAAGTGGTGCTGCTGCGGaacATGGTTGGCCGTGGAGAAGTGGATGAAGACCTGGAAGCAGAGACTAAAGAAGAGTGTGAGAAGTACGGCAAAGTCGTCAAGTGCGTCATCTTCGAGatcTCTGGAGTTTCCGACGACGAAGCCGTCCGCATTTTCCTGGAGTTCGAACGAGTCGAATCGGCCATTAAAGCCGTGGTGGATCTAAATGGGCGCTACTTTGGAGGTCGCGTGGTGAAGGCCTGTTTTTATAACTTGGACAAGTTTCGTGTCTTAGACCTGGGAGATCAGGTGTGAGTGGGAGAACCAGACCCGCGCAACCAGGAGAGAATAAACACCAGGGGGAAGTAATCGGTCTTTCTGTAAATAGCATGAGTAATTTTATACACCCTTGTAAAACATTAGTTTATGTGCCCCTTTTCCGCAATACGTTTTGTAACGAAAATTTAATTTGCTCTTTTGTGAATTGCTTCTAGTCTCTCTCACACCTCACGGTTAAAATATCCTTTTGTCCTTGTGATTTAAGATGTGACGAAGAtcccagaaataaaaaaacgctTTTGGGAGAATAA

Function

symbol description
rbm17 Predicted to enable RNA binding activity. Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of RNA splicing. Predicted to be located in nucleoplasm. Predicted to be part of spliceosomal complex. Orthologous to human RBM17 (RNA binding motif protein 17).

NR:

description
PREDICTED: splicing factor 45 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12840 RBM17, SPF45; splicing factor 45

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236444.1 True 1686 mRNA 0.49 13 13281183 13301329
XM_043236445.1 False 1657 mRNA 0.49 13 13281183 13289706
XM_043236446.1 False 1668 mRNA 0.48 13 13281183 13289665
XM_043236447.1 False 1638 mRNA 0.49 12 13281183 13301329

Neighbor

gene id symbol gene type direction distance location
pfkfb3 pfkfb3,LOC107555830,LOC107748462,LOC107663448 coding downstream 5709 13268075 ~ 13275474 (-)
itih2 itih2,LOC107555817,LOC107666937,LOC107748478 coding downstream 117060 13152421 ~ 13164123 (-)
atp5f1c atp5c1,LOC107728502,LOC107748457,LOC107555824 coding downstream 130477 13146654 ~ 13150706 (-)
taf3 taf3,LOC107555823,LOC107675973,LOC107578374 coding downstream 136275 13102315 ~ 13144908 (-)
gata3 gata3,LOC107555822,LOC107748455,LOC107675980 coding downstream 190348 13075216 ~ 13090835 (-)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding upstream 72302 13373631 ~ 13375343 (-)
nr2c1 nr2c1,LOC107689225,LOC107755159 coding upstream 74845 13376174 ~ 13384446 (-)
fgd6 fgd6,LOC107755156,LOC107689226,LOC107667720,LOC107748482,LOC107567667,LOC107597032 coding upstream 83259 13384588 ~ 13403216 (-)
usp44 usp44,LOC107755158,LOC107597009,LOC107667716,LOC107748469,LOC107567668,LOC107689228 coding upstream 131980 13433309 ~ 13440103 (-)
si:ch211-244b2.3 NA coding upstream 159714 13461043 ~ 13465673 (-)
G28359 NA non-coding downstream 29149 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 35795 13242506 ~ 13245388 (-)
G28350 NA non-coding downstream 51864 13229094 ~ 13229319 (-)
G28349 NA non-coding downstream 53236 13227700 ~ 13227947 (-)
LOC122342546 NA non-coding downstream 209663 12988707 ~ 13071520 (-)
G28377 NA non-coding upstream 10544 13311873 ~ 13319748 (-)
LOC122342564 NA non-coding upstream 42397 13343726 ~ 13344257 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding upstream 308887 13610216 ~ 13612771 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 519367 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 565448 13866777 ~ 13867298 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 94293 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 792002 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1265416 12014631 ~ 12015767 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other downstream 1284544 11841965 ~ 11996639 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other downstream 1597321 11653470 ~ 11683862 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other upstream 15603 13316932 ~ 13361938 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other upstream 110295 13411624 ~ 13432703 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 391142 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 514245 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 674028 13975357 ~ 13980559 (-)

Expression


Co-expression Network