asb13a.1 (asb13a.1,LOC107754064,LOC107560716,LOC107655563,LOC107694252,LOC108436003)


Basic Information

Item Value
gene id asb13a.1
gene name asb13a.1,LOC107754064,LOC107560716,LOC107655563,LOC107694252,LOC108436003
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5410196 ~ 5412564 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236455.1
AAAGcagtttaatgtaattttgtgGTATTAATTGTTTATCACATGCTTCATGAATATAAAAgttatgtttggcattaaaaagAGCTTGTACACAAACCGTTATGGTAGTGAGCGCTATTGAGGAACTACTTCTCCCAGAATCCTTTTGCGTAATTGCCGTATTCAATCCGTAGTGTCGCAAACCGTAAACCACTGGCGGCTTCTCTAAAGATAGAACAAGTTACTTTATCACCACGTTGTTCGCGTGCTATACGagtaattttttgttaaatgtcaaaTCTTAATAAATCATGGAACTCACCGCTGCCAGGTCAACGTTTTACGGCGACATCGGTCACTGGGCTGACCGCACGCCGGTGCACGAAGCTGCGTCTCTAGGTCGAGCTCTGCAGCTGAAACAGCTGATCGAAGCAGGAGCATCAGTTAATATCGTGTCTGTGGATAACTTCACCCCTCTGCATGATGCCTGCATCCAAGCACATCCCAAGTGTGTTCAAATACTGCTGGAGGCTGGAGCTCAGGTGGATGTGCGCACTATCCATGGCAGTACTCCTCTCTGTCACGCCTGTGCTGCTGGAAGCATAGAAAGTGTGAAGCTGCTGGTGGATCACGGAGCATCGGTCAACCCTTCCCTGACCGCCCTGACGGCTTCACCCCTCCACGAGGCCTGCATACGAGGTAACCCAGACTGTGTAAAGCTTATGATAGACAAGGGAGCACTGCTGGAGGCCTTTGACATTTACTTTGGGACGCCGTTACATGCTGCTTGTGCTAAAGCTCACCTAGACTGCGCCCTGCTGCTGCTCAATGCGGGCGCTAAGGTGAACGCCACCAAGTTCCACGAGACGGCGCTGCATCATGCGGCGAGGGCCGAGAGAGTAGACCTGGTGGAGCTGTTGGTGGAGTTTGGTGGAAATGTCCACATAAGTGATAACTTGGGTCACAAACCAAGAGACTATACAAAACCTGAATCCCCTGCCAGTCTCTGTCTGCTGCACTATGAGAgtaACCCTCTGTCTCTGCAGCAGCTGTGCCGTATCGCCCTGAGGACTGTGCTGGGCACCAGAGCTGTGGAGCTGATCCCGAAACTGGACATATCACAGCGCACCATTGATTACCTCGTGTACAAGTCATAACTTTAGAAAACAGTTTCTTAGAGTCTTATTTTGTTTAGAAACCGTTAATAGACAGCTGTTTGTAAAGTCTTAAATTTGAGtcagttaatttaattatagataaatataagtttatgtttaattaatttcagtGAATATGCTACATTGCCTTAAAATCTTTtgcaatgtaaatgtacaaataatataaCCATTTGTATTAGTGTTGGCCCTGTGATTTTTTTGGACAAccagaaagtgtccaaatacctTTTGTCTTAAAGGCATTGTTTTataacttaaacttaaactttcTTGCTAGTAAATCGTTTGTgatatactttattaaaataaatgccatgGGCTTTCCATCAGGAGGTCCTGAAAGCACTTTAGGAGGTCTGTTgagaagatatatataaaacatatagcACTTAACATTTTCGTGATGTTTAACTATTGAACTCAAAAATGTCTGTCTATTAACCATTATGTATTGTCCATTGTTTGCAATTAAAGGTTGAAAACCA

Function

symbol description
asb13a.1 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB13 (ankyrin repeat and SOCS box containing 13).

NR:

description
ankyrin repeat and SOCS box protein 13-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236455.1 True 1642 mRNA 0.43 6 5410196 5412564

Neighbor

gene id symbol gene type direction distance location
gdi2 gdi2,LOC107754057,LOC107560733,LOC107757239,LOC107585127,LOC107694307 coding upstream 154 5401464 ~ 5410042 (+)
ankrd16 ankrd16,LOC107754065,LOC107594131,LOC107694253,LOC107560709 coding upstream 9283 5398333 ~ 5400913 (+)
trnay-gua_2 NA coding upstream 11229 5398880 ~ 5398967 (+)
sema3aa sema3aa,LOC107562295,LOC107694310,LOC107757236,LOC107655621,LOC107560735 coding upstream 65324 5256404 ~ 5344872 (+)
tspan11 tspan11,LOC108279944,LOC107720401,LOC107593980,LOC107560736,LOC107694254 coding upstream 156180 5239403 ~ 5254016 (+)
asb13a.2 asb13a.2,LOC107560715,LOC107754063,LOC107655562,LOC103022068,LOC108436004,LOC108280001 coding downstream 83 5412647 ~ 5417987 (+)
mkln1 mkln1,LOC107754054,LOC107655615,LOC107757245,LOC107560731,LOC107587826,LOC107694304 coding downstream 109189 5521753 ~ 5540119 (+)
cry1a cry1aa,LOC107560722,LOC107593424,LOC107655612,LOC107694298,LOC107757210 coding downstream 291917 5704481 ~ 5715620 (+)
tnnt2c tnnt2c,LOC107560724,LOC107655611,LOC107725585 coding downstream 306445 5719009 ~ 5720254 (+)
LOC122342429 si:dkey-47k20.1,LOC107569154,LOC107676314 coding downstream 460095 5872659 ~ 5876129 (+)
G26196 NA non-coding upstream 204891 5204113 ~ 5205305 (+)
G26156 LOC107715531,LOC107690654,LOC107715130,LOC107574393,LOC564807,LOC564948,LOC107690650 non-coding upstream 287442 5122473 ~ 5122754 (+)
G26155 LOC107571045,LOC107575733,LOC107575819,LOC107690650,LOC107574392,LOC107656209,LOC107574393,LOC107743912,LOC107724548,LOC107577060 non-coding upstream 291954 5117982 ~ 5118242 (+)
G26148 NA non-coding upstream 298567 5111364 ~ 5111629 (+)
G26145 LOC107690655,LOC107573509,LOC107758319,LOC107574392,LOC107589730,LOC107575819,LOC107658713 non-coding upstream 305855 5104031 ~ 5104341 (+)
G26314 NA non-coding downstream 92508 5505072 ~ 5505372 (+)
G26318 NA non-coding downstream 96739 5509303 ~ 5509795 (+)
G26324 NA non-coding downstream 100992 5513556 ~ 5513972 (+)
G26325 NA non-coding downstream 101788 5514352 ~ 5514581 (+)
G26333 NA non-coding downstream 106369 5518933 ~ 5519157 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other upstream 12310 5354332 ~ 5397886 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other upstream 465316 4929471 ~ 4944880 (+)
G25958 NA other upstream 781297 4550163 ~ 4628899 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other upstream 1174952 4232908 ~ 4235244 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other upstream 1179104 4229629 ~ 4231092 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other downstream 369380 5781944 ~ 5862313 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other downstream 450043 5862607 ~ 5898827 (+)
vhll NA other downstream 975979 6388543 ~ 6390927 (+)
G26692 NA other downstream 1775376 7187940 ~ 7227437 (+)
akr1b1.1 akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878 other downstream 2001372 7413936 ~ 7463373 (+)

Expression


Co-expression Network