asb13a.2 (asb13a.2,LOC107560715,LOC107754063,LOC107655562,LOC103022068,LOC108436004,LOC108280001)


Basic Information

Item Value
gene id asb13a.2
gene name asb13a.2,LOC107560715,LOC107754063,LOC107655562,LOC103022068,LOC108436004,LOC108280001
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 5412647 ~ 5417987 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236456.1
GCAACACGTCATAACTAGTGCCAAAACAGAACAAACCACGTGATGTACCTCATTTCTAAACACAGCGGAATTTCTGCTTTTAGTTAGCTGCAGtgtttgctttaaattgttataaCGCTTTACTTAAGCAGAGATGGAAGTGGAAACGGCACGACCTTATTTTTTCGGTGATATCGGTTTCTGGGCAGAGAGGACGGAGGTTCATAAGGCCGCGTGTCAGGGTCAGGTGTCGGAGCTGCAGAGTTTGATCCAGAGCGGAGCTTCAGTAAATATCGTGGCCGTGGACTCCATCACTCCGCTGCACGAGGCGGCCGCGCGCGGACAGACGCAGTGCGTGAGGCTGCTGCTGGACGCCGGGGCTCAGGTTGACGCAAGGAATGTGGACGGCAGCACTCCGCTGTGTGAAGCCTGCTCTATTGGGAACTTTGAGTGTGTGAGGCTTCTTTTGGAGTATGGAGCAAAGGTCAACCCCATGCTTACCTCACGGACCACCTCCCCTCTGCACGAGGCCTGCATGGGAGGTAGTGCAGATTGTGTGAGGTTAGTGATTGCTAAAGGAGCCAGTCTGGAGGCCTATGACCTGTACTACGGTACTCCTCTACATGTGGCATGTGCCAACCGGCACCTGGAGTGTGTTAAAGAGCTACTGAATGCAGGTGTGCAAGTAAATGCCACTCGGCTACACGAGACGCCCTTACATCACGCTGCCAAGTCCAACAATGTGGATATGATTGAGCTGCTGGTGGAGTTTGGGGCCAACATTTACGCCCGAGACAAATATGACAGGAAGCCAGTCAACTACACAAAGCCAGATACTCCCTCAGCACACTGTCTTCAGCTTTATGAGAgtaGCCCTCTGTCTCTGCAGCAGCTGAGCCGTATCGCCCTGAGGACGCTGTTGGGCGCCCGAGccgtggatgtggtggccaaaTTGGATATTCCCAACCGTATTATCAGTTATCTCTTATACCAATGAAATCTTTAAAAGCCCACCCATGCTAGGAAAGACTTTTTACCTCCGATGCACAAACACTTGAACCACTGAAATCTACCGCAACAGTAAATATTAGTTATAATGGCACTCTAGAGCATTAAAGGTGAactatgtaattttttttatgttaaaaatgtatctaaattattattcttgcaattttatatagaaattacacacttcaccttttcAAAGAATAGTTTGCTTGGAAaggaaaaatctgtcattattaaaatgcccgtattatgggttatgaatagtttttattaatgtgaccttatttgttcagtgactcccaaacgattaattcaatgattcattcagtgcatttcatttaaagcttgTGGGCTTGTAACAGATCCAgcagcagcacctagtggcaaagaatgaatgtgCATGTTCTCGAAAAGAGCAACAAGAGGCCAGtcaatatattaatgttttattttgagataaaaCTAGCTCATTTCATATGAGGTGCACTTTCTGGTTTAAAACCTTGCAGGATGCTTTCATTAATTTAAAGCTGTCCTTTTGGGGCACTATAACTCAGTTTCATGACTTTATCCCAATGGGGTCCAAAATAACCTTTAATCCCCACCGTATGGACAAAAAGCGCTGAGATATTTTACTAAATGCCTTAATAGAGGTagcaaatgacagaattttccattTTGGGCAGACTGTGCTTTTAAGTAACAGAAGCACATAAGATTACATAAATAGGAAGCACTTCTTAATAGCACTTCTTGGCAGAACAATCTGGCTTTTACTGTGAAATATGTTGTCTTAATATGTCTGAAGTGAATTTAGGGCTGATTGAAGCCGTTATATGTAAGCTAAATATTGCCGGAAAGAATGAGCGCGAGATggagagacaaaaaaaagaggaaacacTTAATCTGGCAGCTGTCTACGTCCAGGAACGGAGAAACGTCAGTACAGTAGTCGCTGGGATGACAGGCGCTATGCACAACACACAGCACTGCTGGAACGGAGCATGTTAACATCCTCATGCTCTCGTTAGAGATTTATTAGAAGAGATCACAAAGTTTTATTGGAAACACTGGTATCCTTGAGTTATACCACTGTTTTGTGTTCTGCTATAAAGAGATGGACAGAAACCCGTTTACAGCAGCGTTTTATTGCAGAAAGCGTTGTATTAGTACACCGGTTGTGCAAGTCAGGTGAAAGATTTAATATAGTCTGTATGTTTGATTTCTTTTGATTCCGAATTAAGGAAAAAATGAGTTTAGAATATCAGAATATTCTGCAGGAAAATACATCATATTATTTATCTTCACCAAAAATACAAGAATTTGCAGACgtacacaaaaataatgagGTAATGAAAGATAATGTGCGCTTATGAATTGCATATGCAGACAAATTACAGCATGCACAATactgtttggggtcagtaatgttctgtttttgaaagaaatttagaaattttgcttttatgtagctagaatgcattaaattgagagtgaagacatttataatgctacaaatgACATCTAATTTACTTTTATCTatcaaacaacacaaaaaataatgtttgtgtgtataatataaatatatatatatatatatacacacacacacacacacattaaacgatatgtatgtatacataataaatatatacagtaaatgcattaaacagtaaacaaaacttttcttttggatgcactagtttatatataatgttacagaccccaaacttttgatcaGTAGTAATTGTATAAAATGACAAAGCAAAGGTTTTAACTCTATGCAGCTTCTATTTATTAATAGAAACTCTTATTTTAAGCCGGAGTTCAAATGATTTGCtccagtgttgttgtttttttttaatgcactattCCTTCCCTTAAGGACTTGAAAGGGTGTCAGGATTAGTTTTGTGGGTTTGACCCGCTGTTTTCCAAGTTCACTATATCCGGCCTCCTCTTATAAAGTACcgaatgttttataaatagcaGCTAGACCAGAAATAGAATGAAGTCCAAGTGCTTGTGCTCTCAGTGATCTGGAGAAATGAGTTCAGGTCTTCATGAGCGCTGGATCTGACCTGAAGCGGAGCAGCAGGGAGGGCAGGAATGTTGTTATTAGAGCGCTAACCCTCTTCTGATATCAAGCTTACAGAGACACGACAGCTGCTATTGAAAGAATGCTTTCTTATCCCACTCTCATcttaaaacagcctttaaaggaTTGTTGTTTTATCTTGAACGCTCTTAATTGTTTAAAGAGTTCATGGATGTTCTGTACTAGATAACCTGAAAGCTTGGACATTTTTGGTCTTTTCGATCCACTATTCCAAGGCATGAATATTTTTCACACAGGCTTAAAGTATTCGGTGCTATAAGGTTTATTGTTATACTGTTCAGAATTCTTGCTTAATGCTCATTATGATTATTAAAGGTAATTAGGTCATTGTGAAGTAAATGTTTACAGACAA

Function

symbol description
asb13a.2 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB13 (ankyrin repeat and SOCS box containing 13).

NR:

description
PREDICTED: ankyrin repeat and SOCS box protein 13-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236456.1 True 3461 mRNA 0.40 6 5412647 5417987

Neighbor

gene id symbol gene type direction distance location
asb13a.1 asb13a.1,LOC107754064,LOC107560716,LOC107655563,LOC107694252,LOC108436003 coding upstream 83 5410196 ~ 5412564 (+)
gdi2 gdi2,LOC107754057,LOC107560733,LOC107757239,LOC107585127,LOC107694307 coding upstream 2605 5401464 ~ 5410042 (+)
ankrd16 ankrd16,LOC107754065,LOC107594131,LOC107694253,LOC107560709 coding upstream 11734 5398333 ~ 5400913 (+)
trnay-gua_2 NA coding upstream 13680 5398880 ~ 5398967 (+)
sema3aa sema3aa,LOC107562295,LOC107694310,LOC107757236,LOC107655621,LOC107560735 coding upstream 67775 5256404 ~ 5344872 (+)
mkln1 mkln1,LOC107754054,LOC107655615,LOC107757245,LOC107560731,LOC107587826,LOC107694304 coding downstream 103766 5521753 ~ 5540119 (+)
cry1a cry1aa,LOC107560722,LOC107593424,LOC107655612,LOC107694298,LOC107757210 coding downstream 286494 5704481 ~ 5715620 (+)
tnnt2c tnnt2c,LOC107560724,LOC107655611,LOC107725585 coding downstream 301022 5719009 ~ 5720254 (+)
LOC122342429 si:dkey-47k20.1,LOC107569154,LOC107676314 coding downstream 454672 5872659 ~ 5876129 (+)
LOC122342428 si:dkey-47k20.2,LOC107676311,LOC107569153,LOC107741377,LOC107697634,LOC107741381,LOC107557170,LOC107569155,LOC107569150,LOC107748086 coding downstream 459547 5877534 ~ 5881277 (+)
G26196 NA non-coding upstream 207342 5204113 ~ 5205305 (+)
G26156 LOC107715531,LOC107690654,LOC107715130,LOC107574393,LOC564807,LOC564948,LOC107690650 non-coding upstream 289893 5122473 ~ 5122754 (+)
G26155 LOC107571045,LOC107575733,LOC107575819,LOC107690650,LOC107574392,LOC107656209,LOC107574393,LOC107743912,LOC107724548,LOC107577060 non-coding upstream 294405 5117982 ~ 5118242 (+)
G26148 NA non-coding upstream 301018 5111364 ~ 5111629 (+)
G26145 LOC107690655,LOC107573509,LOC107758319,LOC107574392,LOC107589730,LOC107575819,LOC107658713 non-coding upstream 308306 5104031 ~ 5104341 (+)
G26314 NA non-coding downstream 87085 5505072 ~ 5505372 (+)
G26318 NA non-coding downstream 91316 5509303 ~ 5509795 (+)
G26324 NA non-coding downstream 95569 5513556 ~ 5513972 (+)
G26325 NA non-coding downstream 96365 5514352 ~ 5514581 (+)
G26333 NA non-coding downstream 100946 5518933 ~ 5519157 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other upstream 14761 5354332 ~ 5397886 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other upstream 467767 4929471 ~ 4944880 (+)
G25958 NA other upstream 783748 4550163 ~ 4628899 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other upstream 1177403 4232908 ~ 4235244 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other upstream 1181555 4229629 ~ 4231092 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other downstream 363957 5781944 ~ 5862313 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other downstream 444620 5862607 ~ 5898827 (+)
vhll NA other downstream 970556 6388543 ~ 6390927 (+)
G26692 NA other downstream 1769953 7187940 ~ 7227437 (+)
akr1b1.1 akr1b1,LOC107725653,LOC107676909,LOC107587163,LOC107591878 other downstream 1995949 7413936 ~ 7463373 (+)

Expression


Co-expression Network