Item | Value |
---|---|
gene id | celf2 |
gene name | celf2,LOC106927059,LOC108233267,LOC101484207,LOC107092344 |
gene type | coding |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056702.1 |
NCBI id | CM032071.1 |
chromosome length | 29200999 |
location | 12539057 ~ 12671471 (-) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
celf2 | Predicted to enable mRNA 3'-UTR binding activity. Predicted to be involved in mRNA splice site selection and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleus. Is expressed in immature eye; musculature system; nervous system; and neural tube. Orthologous to human CELF2 (CUGBP Elav-like family member 2). |
description |
---|
PREDICTED: CUGBP Elav-like family member 2 isoform X8 |
id | name | namespace |
---|---|---|
GO:0006397 | mRNA processing | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0005737 | cytoplasm | cellular_component |
GO:0000166 | nucleotide binding | molecular_function |
GO:0003723 | RNA binding | molecular_function |
id | description |
---|---|
K13207 | CUGBP, BRUNOL, CELF; CUG-BP- and ETR3-like factor |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043236480.1 | False | 6493 | mRNA | 0.44 | 14 | 12539057 | 12623399 |
XM_043236481.1 | False | 4945 | mRNA | 0.47 | 14 | 12539057 | 12623400 |
XM_043236482.1 | False | 6491 | mRNA | 0.44 | 14 | 12539057 | 12623400 |
XM_043236483.1 | False | 6481 | mRNA | 0.44 | 14 | 12539057 | 12623399 |
XM_043236485.1 | False | 6474 | mRNA | 0.44 | 14 | 12539057 | 12623398 |
XM_043236486.1 | False | 6463 | mRNA | 0.44 | 14 | 12539057 | 12623399 |
XM_043236487.1 | False | 6530 | mRNA | 0.44 | 15 | 12539057 | 12671471 |
XM_043236488.1 | False | 6432 | mRNA | 0.44 | 14 | 12539057 | 12587065 |
XM_043236489.1 | True | 6589 | mRNA | 0.44 | 14 | 12539057 | 12614338 |
XM_043236490.1 | False | 6432 | mRNA | 0.44 | 14 | 12539057 | 12623398 |
XM_043236491.1 | False | 6420 | mRNA | 0.44 | 14 | 12539057 | 12623398 |
XM_043236492.1 | False | 6412 | mRNA | 0.44 | 14 | 12539057 | 12623396 |
XM_043236493.1 | False | 6410 | mRNA | 0.44 | 14 | 12539057 | 12623397 |
XM_043236494.1 | False | 6401 | mRNA | 0.44 | 14 | 12539057 | 12623397 |
XM_043236495.1 | False | 6358 | mRNA | 0.44 | 13 | 12539057 | 12623399 |
XM_043236496.1 | False | 6355 | mRNA | 0.44 | 13 | 12539057 | 12623399 |
XM_043236497.1 | False | 6335 | mRNA | 0.44 | 13 | 12539057 | 12623397 |
XM_043236498.1 | False | 6327 | mRNA | 0.44 | 13 | 12539057 | 12623398 |
XM_043236499.1 | False | 6324 | mRNA | 0.44 | 13 | 12539057 | 12623398 |
XM_043236501.1 | False | 6431 | mRNA | 0.44 | 13 | 12539057 | 12614333 |
XM_043236502.1 | False | 6296 | mRNA | 0.44 | 13 | 12539057 | 12623397 |
XM_043236503.1 | False | 6293 | mRNA | 0.44 | 13 | 12539057 | 12623397 |
XM_043236504.1 | False | 6296 | mRNA | 0.44 | 13 | 12539057 | 12623400 |
XM_043236505.1 | False | 6277 | mRNA | 0.44 | 13 | 12539057 | 12623396 |
XM_043236506.1 | False | 6266 | mRNA | 0.44 | 13 | 12539057 | 12623397 |
XM_043236507.1 | False | 6366 | mRNA | 0.44 | 13 | 12539057 | 12614328 |
XM_043236508.1 | False | 6234 | mRNA | 0.43 | 13 | 12539057 | 12623398 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
usp6nl | usp6nl,LOC107669711,LOC107710686,LOC107572286 | coding | downstream | 2731 | 12492354 ~ 12536326 (-) |
LOC122343505 | trhde,si:ch211-149p5.1,si:ch211-198g19.1,LOC107556776,LOC107666938,LOC107590972,LOC107710683,LOC107710667,LOC107669707 | coding | downstream | 108171 | 12413786 ~ 12430886 (-) |
LOC122343504 | si:ch211-198g19.1,si:ch211-149p5.1,trhde,LOC107590972,LOC107556777,LOC107710683,LOC107556776 | coding | downstream | 167887 | 12279641 ~ 12371170 (-) |
nup107 | nup107,LOC107590859,LOC107710680,LOC107694200,LOC107680040 | coding | downstream | 699005 | 11830757 ~ 11840052 (-) |
cd36 | cd36,LOC107590984,LOC107680017,LOC107694198 | coding | downstream | 746137 | 11785346 ~ 11792920 (-) |
gata3 | gata3,LOC107555822,LOC107748455,LOC107675980 | coding | upstream | 403745 | 13075216 ~ 13090835 (-) |
taf3 | taf3,LOC107555823,LOC107675973,LOC107578374 | coding | upstream | 430844 | 13102315 ~ 13144908 (-) |
atp5f1c | atp5c1,LOC107728502,LOC107748457,LOC107555824 | coding | upstream | 475183 | 13146654 ~ 13150706 (-) |
itih2 | itih2,LOC107555817,LOC107666937,LOC107748478 | coding | upstream | 480950 | 13152421 ~ 13164123 (-) |
pfkfb3 | pfkfb3,LOC107555830,LOC107748462,LOC107663448 | coding | upstream | 596604 | 13268075 ~ 13275474 (-) |
G28130 | NA | non-coding | downstream | 270317 | 12265665 ~ 12268740 (-) |
LOC122342788 | NA | non-coding | downstream | 300920 | 12236645 ~ 12238137 (-) |
G28117 | NA | non-coding | downstream | 383806 | 12148132 ~ 12155251 (-) |
G28086 | NA | non-coding | downstream | 520056 | 12018609 ~ 12019001 (-) |
G28090 | NA | non-coding | downstream | 541754 | 11997013 ~ 11997303 (-) |
LOC122342546 | NA | non-coding | upstream | 317236 | 12988707 ~ 13071520 (-) |
G28349 | NA | non-coding | upstream | 556229 | 13227700 ~ 13227947 (-) |
G28350 | NA | non-coding | upstream | 557623 | 13229094 ~ 13229319 (-) |
G28353 | NA | non-coding | upstream | 571035 | 13242506 ~ 13245388 (-) |
G28359 | NA | non-coding | upstream | 579180 | 13250651 ~ 13252034 (-) |
cpm | cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 | other | downstream | 49876 | 12465612 ~ 12489181 (-) |
G28093 | slc35e3,LOC107710682,LOC107556774,LOC107737854 | other | downstream | 523290 | 12014631 ~ 12015767 (-) |
magi2a | magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 | other | downstream | 542418 | 11841965 ~ 11996639 (-) |
kmt2e | kmt2e,LOC107590817,LOC107590964,LOC107710662 | other | downstream | 855195 | 11653470 ~ 11683862 (-) |
ppfia2 | ppfia2,LOC107694182,LOC107755902,LOC107680027 | other | downstream | 965291 | 11414720 ~ 11573766 (-) |
tmem110l | tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 | other | upstream | 505490 | 13176961 ~ 13186890 (-) |
tmcc3 | tmcc3,LOC107689246,LOC107667715 | other | upstream | 645461 | 13316932 ~ 13361938 (-) |
G28397 | vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 | other | upstream | 740153 | 13411624 ~ 13432703 (-) |
LOC122343399 | LOC107726825,LOC107689735,LOC107584742 | other | upstream | 1021000 | 13692471 ~ 13698715 (-) |
LOC122343280 | NA | other | upstream | 1144103 | 13815574 ~ 13831851 (-) |