LOC122342599 (LOC107749047)


Basic Information

Item Value
gene id LOC122342599
gene name LOC107749047
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 16573127 ~ 16593094 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236544.1
TTCTACAACCCTGCTGAAGAAACGAAAGTTAAAAACAGACTATGTTTTCTGTGTGATGTTTACAGTTGATCGTGAGAATTCTTTTCTCCATTTTGGAAGGAGAAAACCTGAtcattaaacttttttatttgcttatgtGGGAGAACACATGAACACAATGGGAAATCAAAGACGTTTTGAGAAGTTGTCTAGAAACTGAACGTTTTTATCAAAGCAAGTCTTCagctgtggagcagaaagacacttccttattcatAGTCAGTGTTGAAGATCAAACTGTTCAGATCCatcatgaatgaaacacaaacatctggAGATGAAGAGTATTCTCCAGCCTGCAGCTcagttcatcagaagagatcagaagcagagcccagctgtgtgtctatgaagagtgACTGCTCTATGGATCGGCCACCAGTGAAGTTTAAGAGTGAAGATTCACAGCCTGGACTCAGttcagttcatCAAAAGAGATCAGAAGCAGAGTCCTGCTGTGTGTCTaagaagagagagacatctGTGATTCAGTCTTTAGATTTTAAGAGAAGAGTCCTCGACACATTTAGATCAAATCTGCTGAAGAAgtttgagtgtctgtgtgagggaACAGTGATGCAGAGATACCCAACACTGCTGAATgagatctacacagagctctacatcacagagagtCAGAGAAGAGAGAACAATAATGAGCATGAGGTGAGCCAGATTGAGACACAATCCAGGAGAGAAGCAACAGAGGACACAGCCATCAAATGCAGTGACATCTTCAGACCTTTACCTGGACAAGACAAAGACATCAGAACTGTGCTGACAAAGGGAGTGGCTGGCATCGGAAAAACAGTCTCTGCgcagaagttcattctggactgggcAGAAGGGAAAGAGAATCAGGACGTCCAGCTcatatttccacttcctttcagagAGTTTAACTTTATGAAGGACAAAACACTTAGTCTTTCAGATCTTCTTCATGTCTTCTTCCCTGAaactaaagaaatggaaatatccagtgatgaatataaagtgttgttcatctttgatggtctggacgaGTGTCGTCTGTCTCTGGACTTTAAGAGTAAAGTGAATCTGTGTAATATATCTGAGTCAGCCTCAGTGGATGTGCTGCTGGTTAACCTGATTGTGGGGaatctgcttccctctgctTTCAtttggatcacctccagaccagcagcagctgatctcGTCCCCTCTGAGTGCGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGAGCCACAGAAGGAGGAATACTTCAGGAAGAGGATCAGTGATCAGAGTCTGGCCAACAGGATCATCTCACATCTGAAGTCCTCCAAGAGCCTCttcatcatgtgtcacatcccagtcttctgctggatctcagccactGTTCTTGAGAAGATCTTGAGTCGAGCAGAGACTGGAGAGATTCCCAAGActctcactcaaatgtacacacacttcctgatccttcagaccaacatcaaacatgagaaggactatgagaaaaaaatgacGGATGAAGACATTATCCTCAAACTGGGGAAACTGGCTTTTCGGCAGCTAGTGAAAGGAAACCTGATCTTCTATGATGACGACCTGAGAGAGTGTGGAATTGATGTGACAGAAGCATCAGTTTATTCAGGACtgtgcactcagatcttcagagaggagcTGAGCTTGTTTCAGGGGGAAGTCTTCTGCTTCGTTCATCTGAGCCTTCAGGAACATCTAGCAGCTCTATATGTACACCTCTCATTTACAAACAAGAAGAGAAATGTGGTTGACCAAATCCAACAAAAATCTTTCTTTAATGTCTTCTTTAATGAAATTAGACCATTATCTGAGCTGCATCAGAGAGCTGTGGATGAGGCTCTACAGAGTAAGAATGGACATCTAGACCTTTTCCTGCGGTTTCTTCTGGGTCTCTCAGTGGAGTCCAATCAGACTCTCTTAAGAAAACTACTgacacagacaggaagctgcTCCTACAACAAAAGGGAAACAGTTCAGTTCATCAAAGAGAAGATCAGGGAGAATCACTCTTCAGAgaaatccatcaatctgtttcactgtctgaatgaactgggtgatgattcactgattcagGAGATTCAGGGTTATCTGAAATCTGGAAAAATAAGAGAAATCAAACTCTCCTCTTCACAGTGGTCAGCTCTGGTTTATGTGTTGCTGACATCAGAGCAGAAGATGGATGTTTTTGATCTAAAACAGTTTGTTGGGAAACAACATACAGGAGATGAAGTTCTTCAGTATCTGTTACCTGTGGTTAAAGAATCCAGATCAGTTCGGCTATGCGGATGCAAACTCACTGCTCAGTCTTGTggaagtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctggacctgagtaacaatgacctgcaggattctggagtgaagctgctctctgaaggactgaaaagtccaaactgtcatcttgagattctgagGCTATGGGGAAGCAAACTCGCCACTCAGTcttgtgaaagtttgtcttcagttttacaatcctcaaactcaaacatcctgagagagctagacctgagtaacaatgacctgcaggattctggagtgaagctgctctctgaaggactgaagagtccaaactgtaatctggagattctgagGCTATGTGGATGCAAACTCACTGTTCAATCTAGTGaaagtttgtttttagatttacaatcctcaaactcaaacatcctaagagagctggacctgagtaacaatgacctgcaggattctggagtgaagttgctctctgaaggactgaagagtccaaactgtcatctggagattctgagattgtctggctgtatggtgacagagaaaggctgtggttatgtgtctgcagctctgacttcaaacccctcacacctgagagaactggatctgagctacaatcatcctggagattcaggagtgaagctgctctctgaaaaactggaggacTCATCCTGCTCATTGGACAAACTGAAAGTTGATCATGGAGGAGAAACCAGGATTACTGAAGGACTGAAGAAATatgagtgttttttcacactggatccaaacacagcacacactcgtctcattctgtctgaggagaagagaaaggtgatgtgtgtgtctcagtctcagtctcagtcgtatcctgatcatccagacagatttgatggtGTATATCttcaggtgttgtgtagagagagtgtgtgtggacgctgttactgggagactgagtgCAGTGGACATGTGGagatatcagtgtcatataagaacatcagcaggaagggacCGTGTGAAGAGTGTTGGTTTGGAtttaatgatcagtcctggagtttgttcTGCTCTCCTGACAGAtactcattcagacacaataaGATAGACACTGATCTATCTGTGAAGCCCATCATCATCagaagaagaacaggagagTATGAAGATATCTCTAcagtaggagtgtatgtggatgagagcgcaggaactctgtccttcttcagcgtctctgacacaatgagactcatccacacagttCAGACaacattcactcagacactctTTCTTGGGTTTGgtgtttattataaatcatcagtgaaactgtgttgatgaatcagaagagactgatgagATTCTACCCTTAATACTTTGAACTGCATGATGAATCAGTAACAGTGAGATGTTATGAATCTCTCAAGACATTAATACTGCAGCTCAACTTCtatagaaacagaaatataagaatcaataattaatctaaaaaatagatataaaagaataaatgtgtcagaaatagaaagagccgtgtctgtgtttgtgtgtgtgtgtgtataatt

Function

NR:

description
PREDICTED: protein NLRC3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236544.1 True 3866 mRNA 0.43 10 16573127 16593094

Neighbor

gene id symbol gene type direction distance location
LOC122342596 NA coding downstream 30225 16537980 ~ 16542902 (-)
LOC122342885 LOC107749047,LOC107728228,LOC107671223 coding downstream 74288 16484567 ~ 16498839 (-)
LOC122342598 NA coding downstream 89951 16477791 ~ 16483176 (-)
LOC122343883 NA coding downstream 552565 16020444 ~ 16020562 (-)
LOC122343926 NA coding downstream 552968 16020041 ~ 16020159 (-)
LOC122343211 ptk2bb,LOC107589060,LOC107697310,LOC107701495,LOC107563684,LOC107707077 coding upstream 117430 16710524 ~ 16724794 (-)
kcnh5a kcnh5a,LOC107743971,LOC107697309,LOC107563685,LOC107701494,LOC107707078,LOC108434995 coding upstream 155622 16748716 ~ 16821470 (-)
ppp2r5ea ppp2r5ea,LOC107701493,LOC107707079,LOC107563687,LOC107697307,LOC107743972,LOC108434994,LOC108257929,LOC103032801 coding upstream 247611 16840705 ~ 16851156 (-)
sgpp1a si:ch211-212g7.6,LOC107697306,LOC107589063,LOC107743975,LOC107716492,LOC107701492,LOC107563688 coding upstream 259905 16852999 ~ 16864423 (-)
snapc1a LOC107743976,LOC107697295,LOC107589064 coding upstream 271411 16864505 ~ 16867985 (-)
LOC122342602 NA non-coding downstream 22123 16550333 ~ 16551004 (-)
LOC122342601 NA non-coding downstream 27506 16544954 ~ 16545621 (-)
G28970 NA non-coding downstream 108448 16464445 ~ 16464679 (-)
G28966 NA non-coding downstream 111616 16460762 ~ 16461511 (-)
G28935 NA non-coding downstream 152988 16412527 ~ 16420139 (-)
G29012 NA non-coding upstream 16542 16609636 ~ 16609999 (-)
G29021 NA non-coding upstream 107974 16701068 ~ 16701671 (-)
LOC122342882 NA non-coding upstream 315115 16908209 ~ 16924965 (-)
G29127 NA non-coding upstream 362361 16955455 ~ 17026339 (-)
G29143 NA non-coding upstream 445733 17038827 ~ 17040834 (-)
G28898 NA other downstream 640263 15932494 ~ 15932864 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other downstream 961552 15601440 ~ 15611575 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other downstream 1545464 15024587 ~ 15027663 (-)
LOC122342642 pfkfb3 other downstream 1762416 14808543 ~ 14810711 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other downstream 1868505 14687873 ~ 14704622 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other upstream 114680 16707774 ~ 16708960 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other upstream 293059 16886153 ~ 16900295 (-)
G29135 NA other upstream 413833 17006927 ~ 17017823 (-)
xrcc3 xrcc3,LOC107755221,LOC107683971,LOC107560377 other upstream 525249 17118343 ~ 17122129 (-)
srd5a3 srd5a3,LOC107755245,LOC107683999,LOC107665336,LOC107601910 other upstream 1043929 17637023 ~ 17638742 (-)

Expression


Co-expression Network