ttc41 (LOC107656216,LOC107743954,LOC107581281)


Basic Information

Item Value
gene id ttc41
gene name LOC107656216,LOC107743954,LOC107581281
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 4854065 ~ 4861148 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236546.1
TTTAATGTCAGCCTACTTAAAGCTTCAGGAGAAAGTGAACTATATTAGactatatttttgcatttattttaattttttctctgCTGAATGTAACTGCTCTTTAAATTTAGTCACACGTTGAAAATGCATGGAATAAATactcaagaaaaaaatacaggagTGACTCCTGACAGCTTATACCTGGGGTTTCCTTCCTTGCCTTACCTGTGCTATGTTCCTGGGGATCTTCAAGAAGAGCTGATTCACCTGAAAACTAAAGTCTTTCCACACTTAGACACACTTTGCCAGGCCAAAGGAACCCGCTTCACGCCAGTGGACTTGCAGCGAAGCAAACCAGAAAGCAGAGAGGATGAAAATAATCACAAGCCTGAGCTTTATGACCAGCAGCTGAAAATCAGTTTGGATCTCATTGACCGCTCGTCCTTTTTCATCTGTCTTCTTGGATACAGTTATGGACAGTGTCTGCCAGCAGAACATGGATCTCAGTCTGATGTGGGACCACGTTCTTTGTCTGAGGTGGCGAGAAACATGAATGTCGCTGCAGAGGCTGGTTACCCTTGGGTCACGGAGGACGAGTATCGCACCAGTAGCCTTACAGAGCTGGAGATCACCAAGGCAGCCTTCATTGACAACAACAGAAGCTGTTTCTTCTATTTTAAAGACTGCACCCCACAGGACACAGAGGACGACAGCAGTGATGAAACGCACAATTTCTTACACATGCTGTCCGCTCTAAGCCAAACTGAGAGACGCAGATCGAGAGATCTAAAACGAAGGATCATAAATCATTGTCTTCCTGTTCGATTCTTTAAAAACCTTAATGAACTTGAAGAGATGATAAAAGCTGACTGGGAAGGAGCCATTTGTGCATTTCATGAGAATCCAAAACATCAATTCTTAAGATGGCAGGATTCATTTGATCAACATTACCATGAGAGGCACGCTCGTGCATTGTGTGACTGGTTTGTTCCCTCGGCGCCCGCCACAGGAATACTGAACGCACTAAACAAATTTACAGATCCTGTAACCCATAATGCAAAATCTGAGAAGCACTCAAGAAATTCAGGAGCTCATTTCACACGtgaTCTTGAACAGAATGACAAGACAAAGAAGTCTATCTTTCTGGTATGTGGTGAAAGGGGTTGTGGGAAGTCTACTCTGGCGGCGTGGTGGCTGCGGTCTTTCTGCAGACAGAATCCTGATGTTCCAGTCATCTCTCACTTCTGTGGATCCAGCGCATCCAGCACTGACATCAGGTCTATGCTTAGACAGTGTACTGCTCAACTTCGGAGAGCGCATTATGGTGATTTTCCAGATTTGGATGAAGACGTGATTGAGTTTCTGCACCTGCATCGGGTGATTCAGGCATTTACTGCAGCACTCAGTCTTGGGCCTTGTATTCTTCTTGTGGATGGAATTGACCTTCTGACAGAAACACTCAGACTCTCAAAGCAAGAGGTAAAGACATTGCAGTGGCTGCCAGATGCTCTGCCTGCCTATTGTAAATTTATCATCACAACAACCTTCACCGACCTCACTTACAAAAGTCTGGCCAGCAGGACTGATGTCCAAATTCTCAGCTGTCCTCGTCTCTCCGATCCTAGTGTTCTGAGTAGCATTTTGTGCAAACATTTGTCTTTGCCTTACAAGGAGCCGCCAGCCAGTATTTTGCGAAGAGTTGCGCGTAAGAAGCAGTGCCACGTTCCGGCCTTTTTAGCTCTCATTGGCACCGAGTTACGGACATGTGGAgtgctgagagagaaagaggaagagatggaGCTGTTGAAGGAGTATATAGAGGCTGATTCAATTGCCGAGCTCTGGGTGAAGGTCATTCATCGTTGGGTACAAGATTACAGCCCAACTGCTCCAACAGAAGATATTGCTTCTTGTAAAGTCACTGAGGCTCAAACAAGCACTACACCACTCAGGGAGGATCTCTCAGGCTGGGTGTGGGACACGCTCTGTCTTATTCATGTGTCTCGTGCTGGCCTGACTGAGTCTCAGGTTTTGGCTTTGCTGGAAGATCTGGGCTACTGTGGTCATTTGAGAGTCCAGGTTTTGGAATGGGCCAGACTGCGCTCTGCTATTTGGCCTTGGGTTCAGGAGAAAACCAGTGGTCTTCTGACCATCACGCATCAATCACTCAGCCAGGCTATTAACCTGTTGTTGCACGGTACAAAGGGTCACATCTCTTACCATCTGATCCTGGCTAAGTTTTTTCAGAACTCCAGTTCAGAGCTCTGTAGCTGGGCAAGAAAAATGGAAGAGATTCCGTGGCATTTCAAGCAAACCAGTTCATTTAAGGAGTTGCACGACTTCCTCAGTGATCCAGCCACCATGGAGTTTTTGTCAAGCAGTCTAAAACAATACCCACAGATGACAACTGATGTTATATATTATTGGACACTACTAAGGGATGGAGGATTTGACCCTGTGACTTCATTCCAGAATCTGATGGCTCAGGCTTGGGAGCATTGTAATgATCACAGCAGTCTGTGGAGACTGTCTTTGTTCTGCTCCAAATTTATGCTTTGTTTGGATGAGATGCAACAAGCCGAGAAGCTGCTACTGCAAGCAGATCAAATGTTTCAAaagGATGTGGAGCTGGATAGTGACAGTATGAGGTTACTGCTAAAAGTGCAACATATGCTGGCAGAGCTTTACGTTCAAATGCATCTGCCAAAAGACACTGAGATGTATTGCCACAAGGGACTTTTGACAGCCCAGTCGTTTGCAGTAGGCAGCTCAGAGGTCAAACTGATAGTTGGACAGATGCTTTGTCGTCTGTGTGTGGCGTTGCTGGAGGATAGACGCATGCATGAAGTGCCAGGGATTTTCAGAGAGATCGGTTCTGCTAGATACATCTCTGGCCATCCTTGTGCTGAAGGCACAGCTATGCTGCTGAAGGCCATTCACAAGTTGAGTCTTTGTGAGCCCAAGACTGCTGAGAAATGCTTCGAAGCTGCTTTGTCCAGCAGGAGGCGCTGGTACGGCCACGATCATCCTCTGGTAGCAGAAGTGGAGGAGCAGCTTGCAGATCTCTGGGCCAGAGCTCAAACCAGCACAGAGTGGACACAGAGGAAGATGATTGAATTGTACCGGCATGTTCTGAGCACTAAAGAGACCGAAGCTCAGATGTTGCAACTTCCCACAATGCAACACAACCTTGCTGTCATTCTTATGAAGCTTGGCAAAGTGTTGTTGCAAAGCTGCAGTAGAGTGGACAGGAGAGAAGGGCTGGATCTGCTCCAGAGAGCTGAAGACATAAGGATTCATCTCCTGGGCCCTGAGCAGCCAGTGACCCGAGACCTGGAGCTTGTTTCAAACCCTGATATTGCAGGACAGAAGAAGCATGTTCTAGAGGTCATCGGGTCCAACTCAAACAATAAACTGTCACTAGCAAGGTCTGAAACTGCTTTCAAGGAATCACACGGTGGGCTGCTGCAACAATCATCCTCTAGGTCATGTATAACACGACCAACTAGCACACTCCCTAGAAGCTTCTCTAGCCAAACAGCATCACGCCGCGATGAAACCCTAGAAAGACGATGGATGGCTTTCCGGGTCTCTGTTTCTCGGCCACACAGTGATATTAGGACTCTAATGCAAACAGGAAACACTGGTTGGTTTGACCGACAACGGCCCCTGTCGAGATCAACCAGGGGTCCTTCCCAGGGAGATGCATCATGCAGGAGGAAGCTCTGAAACCACTCAACCAATAGATaaggaaatataatttttcacatAATCAGAGTAGTCATGCTCATTGTATTCCATTCTAGTACATTTTACCTTAGTGTTGCTTGCTAACATTTCTATAAAAACTTATATAAAGCTGCTTTTGAAACATAGAATGTGAAGCACTacataaaaatgacaactaTTAGAATAGAcgcattttctgttttctagtGAACATTTTAGCAATTTATCCTTTGTTTGCATAAATTATCTGCATTATTACAACGTGCCtacttaaagcaatagttcacccaaaaatgaaaacgatcTCATAACTCATAACtcaccccaagccatcctacatgtatatgactttcttcttttggaagaaaaaaagtcagaggttttaaaaaattgatcctggctcttccaaacTTGGT

Function

NR:

description
PREDICTED: tetratricopeptide repeat protein 41-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236546.1 True 4124 mRNA 0.45 16 4854065 4861148

Neighbor

gene id symbol gene type direction distance location
glt8d2 glt8d2 coding upstream 6321 4841693 ~ 4847744 (+)
fbxo18 LOC107743400,LOC107658809,LOC107656287,LOC107581284 coding upstream 13460 4832410 ~ 4840605 (+)
adm2a LOC107592207,LOC107743397,LOC107726065,LOC107580886,LOC107656286 coding upstream 26413 4817048 ~ 4827652 (+)
tspan12 tspan12,LOC107592202,LOC107658802,LOC107656244,LOC107565667,LOC107744106 coding upstream 424670 4415145 ~ 4429395 (+)
tmem243b tmem243b,tmem243,LOC107592214,LOC107744120,LOC107580823,LOC107656297 coding upstream 673748 4176998 ~ 4180317 (+)
parp12b parp12b,LOC107726044,LOC107592257,LOC107743438,LOC107658812,LOC107656291,LOC107581297 coding downstream 180 4861328 ~ 4867182 (+)
si:dkeyp-27e10.3 si:dkeyp-27e10.3,LOC107726043,LOC107743425,LOC107656289,LOC107580867,LOC107592246 coding downstream 6874 4868022 ~ 4888613 (+)
LOC122343294 svopl,LOC107725968,LOC107658766,LOC107744112,LOC107656247 coding downstream 28275 4889423 ~ 4894735 (+)
LOC122343293 LOC107658814,LOC107726023,LOC107592209,LOC107656292 coding downstream 33734 4894882 ~ 4928702 (+)
dmtf1 dmtf1,LOC107658823,LOC107726036,LOC107743449,LOC107656295,LOC107580832 coding downstream 97528 4958676 ~ 4965197 (+)
G26008 NA non-coding upstream 86244 4765864 ~ 4767821 (+)
G25976 LOC107743325,LOC107658806,LOC107580925 non-coding upstream 110462 4730837 ~ 4743603 (+)
G25981 flncb,LOC107592205 non-coding upstream 163282 4689375 ~ 4690783 (+)
G25941 NA non-coding upstream 418428 4432605 ~ 4435637 (+)
G25940 NA non-coding upstream 422107 4431623 ~ 4431958 (+)
G26043 NA non-coding downstream 120061 4981209 ~ 4994260 (+)
LOC122343429 NA non-coding downstream 122073 4983221 ~ 4985211 (+)
LOC122342533 NA non-coding downstream 125031 4986179 ~ 4988188 (+)
LOC122342534 NA non-coding downstream 128019 4989167 ~ 4991312 (+)
LOC122343284 NA non-coding downstream 130926 4992074 ~ 4994254 (+)
G25958 NA other upstream 225166 4550163 ~ 4628899 (+)
G25838 si:dkey-153k10.9,LOC100147981,LOC107743973,LOC107656294,LOC107725885,LOC107592247 other upstream 618821 4232908 ~ 4235244 (+)
G25837 si:dkey-153k10.9,LOC107592247,LOC107658817,LOC107743973,LOC107656294,LOC107581279 other upstream 622973 4229629 ~ 4231092 (+)
G25551 NA other upstream 1115471 3737502 ~ 3738594 (+)
G25514 NA other upstream 1351971 3481629 ~ 3502094 (+)
LOC122343397 LOC107580843,LOC107725884,LOC107658833,LOC107656293,LOC108428166 other downstream 68323 4929471 ~ 4944880 (+)
pcloa pcloa,LOC107757237,LOC107694308,LOC107577557,LOC107560734 other downstream 493184 5354332 ~ 5397886 (+)
LOC122342465 LOC107560737,LOC107742176,LOC107757234,LOC107690649,LOC107589816,LOC107694311,LOC107673148,LOC107559271,LOC107738440,LOC107670367,LOC556054,LOC108414180 other downstream 920796 5781944 ~ 5862313 (+)
LOC122342837 grm4,LOC107549321,LOC107716363,LOC107708172,LOC107569297,LOC107666973,LOC107678149 other downstream 1001459 5862607 ~ 5898827 (+)
vhll NA other downstream 1527395 6388543 ~ 6390927 (+)

Expression


Co-expression Network