nup50 (nup50,LOC107699201,LOC107562145,LOC107687567,LOC107601009,LOC107719874)


Basic Information

Item Value
gene id nup50
gene name nup50,LOC107699201,LOC107562145,LOC107687567,LOC107601009,LOC107719874
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15595661 ~ 15602006 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236561.1
TACGCTGCTCTGCGCACATGCGCAGTGAGAGACGCGTTTGTAAGATGGCGGTGTGAGCGCGCGGCCTTCTTCTGTATGCGCGAGATTCCCGCGGTCATCATTCAAACATTTGATACAGTGTGTGTGGCGCGAACGGTTGGCGGGAGACAGTGAGAGCTGAGCTGTGATGGCCAAGCGGATTGCTGAAAAAGAGTTGACGGACAGGAACTGGGATCAGGAAGATGAAGGCGAGGAGGCAGGAACATTTTCAATTGCGAGTGAAGATGTGATGAAAAATCGCGCCATCAAGAAAGCCAGGCGTCGTAACGTAGGAGCGGAGGGAGAGAGTGGTGGGGCTTTCAAAGAGTTTAAGGGGTTCTCTCTGACCCCGACCGCAGGGACCTCGTCGTTCTCGGGCTTTGGTAATGGTGCTGGTTTCAAACCTATGTCCACCTTGACCAATGGCAGCGTAGCGTCGGTGGCCCCATCCTTTACTGGTTTCAATGTTCCAACATCTGCTAAAACTAATAGCGGTCCCTTAACGTTCAACAGCTCCACCCCCTCCAAACCCACAGACGGTGATGTCACCTCTAATGGCTCCACCCCCAGCAGTAAAGAATACAACCGCCAGCTCACTGCACTAAACTGCTCCGTACGCGACTGGATCACCAAGCATGTCAATGACAACCCCCTGTGTGACCTCAACCCCATCTTCCGTGACTACGAGAGACACCTGGCCAGCATCGAAAAGAAATACGGCATCGGTGCGGAGAGCACGTCGTTCGGAGGGGAGCAGAAGCAGCTTCTGACTAGCGGAACAGCTGCTTCTGTTTCCGGCACGAGTGCTGCCGTGACTGCGTCTGTCAGTGGTGCAGCACCACAgctcttttcatttaaagacaAGGATGCTGCTGCAGCAGACAAACCTACAGTCGCGGCTCCTCCCGGCGTCTCCTTTAATTTCGGCCAGAAGGTAGACTGCTCTGTGCTTGGCGCGCTTGCTTCCAGCGGAGCACCGTCGTTCTCGTTTTCTTCCTCTTCAGGCGTGTCTGTGTTCGGAACGGCGGCCAGTAGTGTCAGTCCTGCCATGCCATCATCCTCTGTGAATGCGGCCAGCAACAGCCAGACTGCAGATGAGAATGGGGAGGAATCAGAGGAGCCGCCTGTTCCTGTGGTAAAAGAGATTAAGGAGAAAGACGCCTTCTACTCCAAAAAGTGTAAGTTGTTTTATAAGAAAGACGGAGAGTTTAAGGAGAAGGGGGTCGGAACACTGCATCTGAAGATGGTGGCTGAGAGCAAACTTCAGCTTTTAGTGCGAGCCGACACCAACCTGGggaacATCTTGTTGAACATCATGGTGCCCTCTACCATGCCCTGCTCACGAACTGGCAAAAACAACGTGATGGTGGTGTGCGTGCCAAACCCTCCGGTGGACGACAAGAACCCCGGCACTCCTGTCCCGGTGCTCATACGCGTGAAAACGGCAGAGGACGCAGATGAGCTGCATCAAAtcctgcaagaaaaaaaagcctaaaGCGGCATCCACCCCCCCACTCATATGTGTTTGACTGAACGTGGCTCGTACGACTCCAGTAACACAACACGACACACACATCTGATCTAGAACTGTTTGTCTACGTCCTGTAAATCGTCTAGAAGAGTGACGGAAACCAATCGGTTCGCCTACTGTGAAATCACTCGCGGTCCTACTGTAAACGCTGCTCATCGTATCAGAGATGCTTGAGAAGTCGAGCGATAACGAGGAAGGCCACATTTCGTTATAGCAAAGACACGAGTCTGGATTCATCAACATTCctttgagttttattttagctgctATACAAGGAATTCTTCAAGGTTTAGATGGAGCAGACTGttttacaaaaatcattttgtcgatttaattttaaattctttgACTTGAGTATGGAGATGTGTACGGTTTTCCGTGCTTGCAGGAGAGGTTGTTTAGAGGTCAGTATTACATCGAAGatcttgaaatataatttttttttttttttttccccaaaatccGAAAATTTCCTCTGCTCTAATTAAAAGTACTGTTCGAGAAATAAGTGATCAGATAGacttggttatttttttttatatacacacacagctcatttttttctctcagtaCTTTCTGTGATggtatttattttggattatggCATGTGTGGATGTTGTGTTCTGTACATTGAATGATACGATGTATGTTAACCACAGACCCGCTGAGGTGTAAAAACGAATGCTTTATGGCAATCTGTTCTGAAAGTTATCTctggaagttttttttattattattctttccCCTGTAAGTGGCCTTTTTACTGCCTTACATGATGAGGTATGTGTTTTAAGTGTTGAGCAGCACTAGATCTACCTTGCATTCATTTACTGgtgaataaatcaaaagaacCTGATGCGATTGGTTTCATTTGCAGCACACGCATGATGTAaatcactttttgttttgtacaaatgGTTATCCTACTTATTgaattttaaagattaaaaatagtGTTATAATTGACA

Function

symbol description
nup50 Predicted to be involved in protein import into nucleus. Predicted to act upstream of or within intracellular transport; mRNA transport; and protein transport. Predicted to be located in nucleus. Predicted to be part of nuclear pore. Orthologous to human NUP50 (nucleoporin 50).

NR:

description
PREDICTED: nuclear pore complex protein Nup50

GO:

id name namespace
GO:0046907 intracellular transport biological_process
GO:0005643 nuclear pore cellular_component

KEGG:

id description
K14295 NUP50, NPAP60; nuclear pore complex protein Nup50

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236561.1 True 2517 mRNA 0.47 8 15595661 15602006

Neighbor

gene id symbol gene type direction distance location
LOC122343379 ppm1j,LOC107668166,LOC107708158 coding upstream 240106 15342262 ~ 15355555 (+)
creld2 LOC107730684,LOC107699369,LOC107601011 coding upstream 438027 15149133 ~ 15157634 (+)
LOC122342621 zbed4,LOC107744591,LOC107663563,LOC107563622 coding upstream 452250 15136921 ~ 15143411 (+)
LOC122342863 cpne8,LOC107569221,LOC107666208,LOC108279828,LOC101886030,LOC108427072,LOC108244036 coding upstream 788295 14784476 ~ 14807366 (+)
LOC122342644 tbc1d22a,LOC107721154,LOC107689730 coding upstream 833689 14758492 ~ 14761972 (+)
LOC122342219 LOC107554691,LOC107656224 coding downstream 36506 15638512 ~ 15644874 (+)
LOC122342595 NA coding downstream 772570 16374576 ~ 16377941 (+)
LOC122342597 rab3ip,LOC107709967,LOC107689177,LOC107757202,LOC107675141,LOC107554773 coding downstream 776627 16378633 ~ 16398499 (+)
LOC122342594 LOC107709965,LOC107554744,LOC107700908,LOC107675140,LOC107569318,LOC107757199 coding downstream 796626 16398632 ~ 16427186 (+)
ptprb LOC107709971,LOC107685369,LOC107738449,LOC107575178,LOC107562139 coding downstream 834385 16436391 ~ 16457297 (+)
G28813 NA non-coding upstream 103479 15488076 ~ 15492182 (+)
G28797 NA non-coding upstream 221124 15374110 ~ 15374537 (+)
LOC122343380 LOC107699369,LOC107730684,LOC107601011 non-coding upstream 254157 15339618 ~ 15341504 (+)
G28745 NA non-coding upstream 481133 15114111 ~ 15114528 (+)
LOC122342648 NA non-coding upstream 731561 14863033 ~ 14864100 (+)
G28882 NA non-coding downstream 123186 15725192 ~ 15725554 (+)
G28888 NA non-coding downstream 135462 15737468 ~ 15737762 (+)
G28889 NA non-coding downstream 152807 15754813 ~ 15755128 (+)
G28890 NA non-coding downstream 238196 15840202 ~ 15840666 (+)
G28896 NA non-coding downstream 326125 15928131 ~ 15928838 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other upstream 39979 15439334 ~ 15555682 (+)
LOC122342869 NA other upstream 175358 15413147 ~ 15420303 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other upstream 381229 15157755 ~ 15214432 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other upstream 1112840 14400029 ~ 14482821 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other upstream 1301043 14177430 ~ 14294618 (+)
G28891 NA other downstream 239366 15841372 ~ 15841855 (+)
G28899 NA other downstream 383213 15985219 ~ 15985726 (+)
G28982 NA other downstream 871892 16473898 ~ 16474381 (+)
atp5mj NA other downstream 1436413 17038419 ~ 17040830 (+)
G29526 NA other downstream 2698409 18300415 ~ 18301189 (+)

Expression


Co-expression Network