yaf2 (yaf2,LOC108439407,LOC105018284,LOC107725590)


Basic Information

Item Value
gene id yaf2
gene name yaf2,LOC108439407,LOC105018284,LOC107725590
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 6940446 ~ 6950897 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236566.1
TGACCGCCGCTGCGCCGGAGTTTCTACGACAGCTGGGAgccgcgagagagagagagagagagagagagagcgagagaggaggACCGAGCGCGAGAGGCGGCTGTGCCTGCGACGCTTCGCTCAAAGTTTCTGCAGCATGGGAGACAAGAGGAGTCCGACGAGGCCGAAACGCCAAGCGAAGCCCTCCTCCGACGACGGCTACTGGGACTGCAGCGTGTGTACGTTCAAGAACAGCGCCGAAGCGTTCAAATGCATGATGTGCGATGTCAGGAAGGGAACGTCAACGCGGAAACCTCGTCCCGTTTCCCAGCTGGTAGCCCAGCAAGTCACACAGCAGTTTGCTTCACCCACACAGCCCAAGAAAGATAAAAAGGATAAGACGGAGAAGGACAAGAACGAGAGGGAACCGACACTGAAAAAGAACAGCCACAAGAAAATGAGGCCCAGGTTAAAAAATGTGGACCGGAGCAGCGCGCAGCATCTGGAAGTGACAGTGGGAGACCTGACGGTTATCATAACAGACTTTAAGGAGAAAACTAAGCCCTCCTCCAGTTCGTCCTCCAGCGCAGCATCCGGAGACCACCACAGCCAGAGCGGATCCAACTCAGACAACACAGAGAAGGGGATCTCCAGATCCTCGTCTCCGCGAGGGGAGGGTTCCTCGCTCAACGGGGAGTCCCACTAGGAATCCCTGGATTACGAACGTTACTTCCAGTCTCCTGCACCTAATATATCCATTTTAAACGAACAGTCACAGGAGCGCGCTTATGTATGCCAAGACTTACAGAGAAAGCAGGTTTAACCCAGCAATATAAGCCATCTCTCACCACTACCACAGTCACACGCTCAGAAACATAGGATCTCACCACAATACACTCGTCCCGTTTCGTTACAATGCCCAGTAGGTCAGCTTGAGATAAACTGTAGACTTTGTAAGCAATTTTGACGATTAAATTTTGACGGTTTAATTTCTATAGCACGTGGTAGTATTACGAATCAGATATGTGTTGTTGTCTGTTTGGATTTGGACATTGACACCCATTCTCGTTCTCTTCATTATAGTcgagtaattattatttttttttacatttttaatatgtaatttctGCACCCGTTGCGTCTCGACGGTTAGCCCTGGGGCTTAAAAAGATTCAACTGGAACACTGTCGTGAACGTACTTGCTTCTACATCAACGACACGTCGGCTGCAAACCGTAACTTCAAGTAATATACTTTCAATGCATTACGTGTCGGGTGTTAAGCCCTCTGTGAATAACTGTGACCCGAACAGGACTTCCCTTCTCAGTGGTTTGTTGCACCTGTTGGTACTTTTTGTACGGTTTTATGAGACGCagaaattgtttaatttgtccTTGTTCATGCCGTTTTGTTTGAAACTTGTCATAGATTGCATCACTTGTGGGGCTAGTTCTACCAGCGCTGTTTTGTGTTAGATTGTCTTGATAATAATTCTGTTAATTCCACGAGAAACATAACATTTAcgactaaaaatgacaaatgtatttgtaaGATGTTGAATTCATCCCTCCTTCCTTTATGATGAACGgtggtatataaatatattgcagtATAGGAAATATCTCTTAATAAAATTTAAGATTTAGAA

Function

symbol description
yaf2 Predicted to enable DNA binding activity and transcription coregulator activity. Acts upstream of or within forebrain development and negative regulation of apoptotic process. Predicted to be active in nucleus. Is expressed in forebrain; head; and midbrain. Orthologous to human YAF2 (YY1 associated factor 2).

NR:

description
PREDICTED: YY1-associated factor 2

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0030900 forebrain development biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11468 YAF2; YY1-associated factor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236566.1 True 1626 mRNA 0.46 4 6940446 6950897

Neighbor

gene id symbol gene type direction distance location
gxylt1b gxylt1,LOC107729836,LOC107582079,LOC107694260 coding downstream 150 6934093 ~ 6940296 (-)
akap14 NA coding downstream 147011 6792367 ~ 6793435 (-)
irf5 LOC107577905,LOC107587141,LOC107725599,LOC107655585,LOC107694268,LOC107757280 coding downstream 156411 6776299 ~ 6784035 (-)
opn1sw1 opn1sw coding downstream 182258 6756012 ~ 6758188 (-)
mdm1 LOC107577767,LOC107655590,LOC107725562,LOC107694231 coding downstream 190196 6740893 ~ 6750250 (-)
zcrb1 zcrb1 coding upstream 995 6951892 ~ 6954640 (-)
prickle1b prickle1,LOC107725650,LOC107587146,LOC107694259,LOC107729853 coding upstream 19650 6970547 ~ 6992898 (-)
pus7l pus7l,LOC107694257,LOC107729857,LOC107591455,LOC107729827 coding upstream 134417 7085314 ~ 7091042 (-)
twf1b twf1,twf1b,LOC107587151,LOC107582633,LOC107694256,LOC107729862 coding upstream 140671 7091568 ~ 7099253 (-)
nell2b nell2b,nell2,LOC107587152,LOC107725667,LOC107729859,LOC107694255,LOC107582716 coding upstream 168973 7119870 ~ 7157914 (-)
G26790 LOC107725579,LOC107587145 non-coding downstream 31951 6845559 ~ 6908495 (-)
G26796 NA non-coding downstream 77064 6862723 ~ 6863382 (-)
G26795 cntn1b,cntn1,LOC107581848,LOC107757284,LOC107694230,LOC107725506 non-coding downstream 78199 6860074 ~ 6862247 (-)
G26787 LOC107725579,LOC107655582 non-coding downstream 96597 6841974 ~ 6843849 (-)
LOC122342911 NA non-coding downstream 551245 6377116 ~ 6389201 (-)
LOC122343305 NA non-coding upstream 215909 7166806 ~ 7189549 (-)
G26832 NA non-coding upstream 368605 7319502 ~ 7319725 (-)
G26846 NA non-coding upstream 422276 7373173 ~ 7373595 (-)
LOC122343472 NA non-coding upstream 448769 7399666 ~ 7456641 (-)
G26956 NA non-coding upstream 903852 7854749 ~ 7856511 (-)
il22 NA other downstream 199705 6737641 ~ 6740741 (-)
msrb3 msrb3,LOC107725596,LOC107587134,LOC107757268,LOC107561995 other downstream 578962 6350491 ~ 6361484 (-)
arhgef39 arhgef39,LOC107725686,LOC107655603,LOC107757260,LOC107694288 other downstream 687798 6085892 ~ 6252648 (-)
mrps33 mrps33,LOC107694294,LOC107597883,LOC107725593,LOC107600452,LOC107655561 other downstream 1000431 5938055 ~ 5940015 (-)
G26462 NA other downstream 1026908 5906755 ~ 5913538 (-)
si:dkey-261e22.4 NA other upstream 263437 7214334 ~ 7220911 (-)
G26951 NA other upstream 604218 7555115 ~ 7558453 (-)
LOC122343432 NA other upstream 1297014 8247911 ~ 8249927 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other upstream 1509609 8460506 ~ 8468028 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other upstream 1562733 8513630 ~ 8517583 (-)

Expression


Co-expression Network