slc26a4 (slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015)


Basic Information

Item Value
gene id slc26a4
gene name slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9545685 ~ 9554560 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236573.1
tttatcgcaaACACAGACACGCATGCTTTCCACCGAGATCGGGAGGAACAGTCACCCTTGGCAGGATGCATGCTGTGGGCCTCTGATGTAATTCCCTCATGCTTCCTGTTGGTGCTTAACCCTGATACACCTCCCACATCCCAACGCTGCTTATAAATACAAAAGAGAGGGATGCTGGCCCCATTAAGATAGTCCGGCTTCATAGACATGGACAAAATGTGCCTTTAAGCGCATGTCTGGCATGGATGCACCCTATTCTTGTGGAACTTCTCTCAAACTTAACAGagGAAAGACAAGCCAAGCAGATTTTCACAGGCAAACAAATCAGGCAATATATGATGGACGAGTGTTCTAATGAAAGCGATTATCTCGTGTCGCGACGCATCTACTCCAACCAGGTCTTTGACCGGGTTCATGAGAGACAAGCCCGAGAGATCCAGAGTTTACGAGAGCGGCTGAGCAGAGCCTGCGTATGCACTGATAAATGGGCTGTTCAGAAGATAAAGGGGCTTCTGCCAATCCTGGATTGGCTCCCTAAATACCCAGTCAAGCAATGGCTACCTGGTGATGTTGTTTCTGGGGTCACCACAGGACTAGTATGCTGTTTACAAGGTGTGGCTTATGCATTGCTGGCTTCTGTAGCACCAGTCTATGGACTCTACTCTGCATTTTTTCCTATTCTTACATACTTTGTCCTAGGCACATCCAGACATATCTCTGTGGGTCCATTCCCTGTCACCTGTCTGATGGTGGGCTCTGTAGTTTTGACCTTAGCTCCTGATGAACACTTCCTGCGTCCAGGGAACTTCACAGGTGTGAATGAGACGGTGGCAGATAAAGGGTTAATGGAGGTTGATGTAGAGGCAAGAGAGGCCCAGAGAATCCTGGTGGCTTGTACCATGACAGTGTTGGTTGGACTATTTCAGGTGGCTATGGGGCTGATGCAGGTGGGCTTTCTGGTCAGATATCTCTCAGACCCACTAGTAGGTGGGTTCACCACTGCTGCTGCATTTCATGTCTTCATCTCTCAGATTAAAACCATTGTGTCTGTTCCTATACACAACCATAACGGATTCTTCTCCCTTGCTTATACTCTCATTGATGTAGCTAGGAACATCAACCAAACGAATATTGCAGACCTGATTGCTGGATTACTAACAATCTTCATTGTTATGGCTGTGAAAGAGATCAACACAAAATTTCAGCATAAAATCCCAGTGCCGATTCCCATAGAAGTGATTGTGACAGTGATAGCTTCTGCAGTCTCTCATGGGATGGACCTAAACTCCCAGTACGGCGCCAGCATTGTCCACAGCCTCCCAAGGGGGTTTAAACCACCACAAATACCAAACATAGCACTCATCGGGAATATTTTGGGCTCTAGTTTTTCCACAGCAGTGGTTGGTTATGCGGTAGCAGTCTCAGTGGCAAAAGTCTATGCTGCAAAACACGATTACACAGTAGACGGCAACCAGGAGCTGATAGCCTTTGGCATCAGCAATATTTTTGGAGGATGTTTCTCAAGTTTTGTGGCCAGCACCGCGTTGTCGAGGACAGCAGTGCAGGAAAGCACAGGGGGGAAGAGTCAGGTTGCTGGTATAATCTCAGCTCTGATGGTGATGATAGTGATTTTGGCCCTTGGGCCATTTCTTCAGCCTTTGCAGAAGTCAGTGCTGGCTGGCATTGTTATAGCCAACCTGAAGGGCATGTTCATGCAGATGTGTGAAGTGCCTGTTCTCTGGAGGCAGAACCGAACAGACTGTCTCATCTGGATAGCTACATGCCTGGCATGCATTGTGCTGGGTTTAGATGTGGGTCTGCTGGCTGGTCTGGTATTTGAGATGGGCACAGTGGTGGTCCGAACGCAATTCCCTCATTGTGCCACTCTTGGAAATGTCCCAAATACTGATATCTACAAAAACATGAAGGACTACAAAAGTATTGATGAAATTCCTGGAATAAAGATCTTCAAGTGCAACTCACCCATTTACTTTGCAAATATTGATTACTTCAAAGAGAAGTTAAGAGAAGAGGTGGGGTTTGATGCAGTGCGGGTGttcaagaaaagaaataaagcttTGAAGAAGATTTACAAActcattaaaaaaggaaaactacAAGCTACAGAGGATGGTTTGGTGCCAACCAAAGTTGAAAGTTTTGGAGTTGAAAACCAAGCCTTTGAAAAAGACCAGGGTCCTGAGCTGGAGGAAGGAGCGCCTCAGCCAGACTCAGAGGTGAAGGTTGAAGTAGACTGGACGTCTGAGCTGCCTGTCAGCGTGGCGGTACCCAGGGTCCATATTCACAGCCTCGTGGTGGACTTTTCTGCTGTCTCATTCCTGGACGTGGTAGCAGCCAAGTCCCTCAAACTGGTGGTGAAGGAATTCATACGAATTGGGGTCAGCGTCTACATCGCAGGCTGTGATGGTGAGCTTGTCAGGAGAATGGAGGCCCTGTCCTTCTTTGATGAGGAGGTTACCAGAGACATTCTCTTCCTCTCCGTGCATGACGCCATTTTATTCATCCAgctggaaacctccactgcaaACGATGAGGATCCATTAGCTGAGAagATTTCACAGTTGCAAGATGACAAAGAGCCACTTTCTTTTGATGACGACGATAAGGACCTGATTGAGACCTATGACATCCAGCACTTGGCTATTTATGGACTTTCAAACTGAGTAAACACTCCCTTTGTTAAAAACCGCTGGGAGAGACAGTCATCGCAGACCCCCGATTCATCTGCAGATAATAGGTCAGGGGACATCCAGGAAAGACTGAAAGTGGAGCTAACAAAGACTGCCACGTAACAccaaatgcaaaattaaaaaaaacaagtgggGTTTTCATTATTACAGCCTCATTTTAGAGGCAAGTACAAGACAACAAATGGCATTAATCACAATATAGGACGCGGAGGCCTGCCGCTTCATCAGTGCCAAGGCCCTTTGTGATAGACAAACACATTAAATCTGTGTTTCTAGTTAACAACGGTTGCCCGAAAGTCTTAAAGAAGAGGAACATTTGATATTTGGAAATAAATCAAT
>XM_043236574.1
GGGCTCCTTTGGTCTGTTCGATCAGATTGTTCTGACACAGGGGAGGCAAGACCTTCTAAGTGTTCGCTTATCTGGACCAGCCATCCtagaaaatgagagaaagaaaatgaaacggTGACAGCAGagGAAAGACAAGCCAAGCAGATTTTCACAGGCAAACAAATCAGGCAATATATGATGGACGAGTGTTCTAATGAAAGCGATTATCTCGTGTCGCGACGCATCTACTCCAACCAGGTCTTTGACCGGGTTCATGAGAGACAAGCCCGAGAGATCCAGAGTTTACGAGAGCGGCTGAGCAGAGCCTGCGTATGCACTGATAAATGGGCTGTTCAGAAGATAAAGGGGCTTCTGCCAATCCTGGATTGGCTCCCTAAATACCCAGTCAAGCAATGGCTACCTGGTGATGTTGTTTCTGGGGTCACCACAGGACTAGTATGCTGTTTACAAGGTGTGGCTTATGCATTGCTGGCTTCTGTAGCACCAGTCTATGGACTCTACTCTGCATTTTTTCCTATTCTTACATACTTTGTCCTAGGCACATCCAGACATATCTCTGTGGGTCCATTCCCTGTCACCTGTCTGATGGTGGGCTCTGTAGTTTTGACCTTAGCTCCTGATGAACACTTCCTGCGTCCAGGGAACTTCACAGGTGTGAATGAGACGGTGGCAGATAAAGGGTTAATGGAGGTTGATGTAGAGGCAAGAGAGGCCCAGAGAATCCTGGTGGCTTGTACCATGACAGTGTTGGTTGGACTATTTCAGGTGGCTATGGGGCTGATGCAGGTGGGCTTTCTGGTCAGATATCTCTCAGACCCACTAGTAGGTGGGTTCACCACTGCTGCTGCATTTCATGTCTTCATCTCTCAGATTAAAACCATTGTGTCTGTTCCTATACACAACCATAACGGATTCTTCTCCCTTGCTTATACTCTCATTGATGTAGCTAGGAACATCAACCAAACGAATATTGCAGACCTGATTGCTGGATTACTAACAATCTTCATTGTTATGGCTGTGAAAGAGATCAACACAAAATTTCAGCATAAAATCCCAGTGCCGATTCCCATAGAAGTGATTGTGACAGTGATAGCTTCTGCAGTCTCTCATGGGATGGACCTAAACTCCCAGTACGGCGCCAGCATTGTCCACAGCCTCCCAAGGGGGTTTAAACCACCACAAATACCAAACATAGCACTCATCGGGAATATTTTGGGCTCTAGTTTTTCCACAGCAGTGGTTGGTTATGCGGTAGCAGTCTCAGTGGCAAAAGTCTATGCTGCAAAACACGATTACACAGTAGACGGCAACCAGGAGCTGATAGCCTTTGGCATCAGCAATATTTTTGGAGGATGTTTCTCAAGTTTTGTGGCCAGCACCGCGTTGTCGAGGACAGCAGTGCAGGAAAGCACAGGGGGGAAGAGTCAGGTTGCTGGTATAATCTCAGCTCTGATGGTGATGATAGTGATTTTGGCCCTTGGGCCATTTCTTCAGCCTTTGCAGAAGTCAGTGCTGGCTGGCATTGTTATAGCCAACCTGAAGGGCATGTTCATGCAGATGTGTGAAGTGCCTGTTCTCTGGAGGCAGAACCGAACAGACTGTCTCATCTGGATAGCTACATGCCTGGCATGCATTGTGCTGGGTTTAGATGTGGGTCTGCTGGCTGGTCTGGTATTTGAGATGGGCACAGTGGTGGTCCGAACGCAATTCCCTCATTGTGCCACTCTTGGAAATGTCCCAAATACTGATATCTACAAAAACATGAAGGACTACAAAAGTATTGATGAAATTCCTGGAATAAAGATCTTCAAGTGCAACTCACCCATTTACTTTGCAAATATTGATTACTTCAAAGAGAAGTTAAGAGAAGAGGTGGGGTTTGATGCAGTGCGGGTGttcaagaaaagaaataaagcttTGAAGAAGATTTACAAActcattaaaaaaggaaaactacAAGCTACAGAGGATGGTTTGGTGCCAACCAAAGTTGAAAGTTTTGGAGTTGAAAACCAAGCCTTTGAAAAAGACCAGGGTCCTGAGCTGGAGGAAGGAGCGCCTCAGCCAGACTCAGAGGTGAAGGTTGAAGTAGACTGGACGTCTGAGCTGCCTGTCAGCGTGGCGGTACCCAGGGTCCATATTCACAGCCTCGTGGTGGACTTTTCTGCTGTCTCATTCCTGGACGTGGTAGCAGCCAAGTCCCTCAAACTGGTGGTGAAGGAATTCATACGAATTGGGGTCAGCGTCTACATCGCAGGCTGTGATGGTGAGCTTGTCAGGAGAATGGAGGCCCTGTCCTTCTTTGATGAGGAGGTTACCAGAGACATTCTCTTCCTCTCCGTGCATGACGCCATTTTATTCATCCAgctggaaacctccactgcaaACGATGAGGATCCATTAGCTGAGAagATTTCACAGTTGCAAGATGACAAAGAGCCACTTTCTTTTGATGACGACGATAAGGACCTGATTGAGACCTATGACATCCAGCACTTGGCTATTTATGGACTTTCAAACTGAGTAAACACTCCCTTTGTTAAAAACCGCTGGGAGAGACAGTCATCGCAGACCCCCGATTCATCTGCAGATAATAGGTCAGGGGACATCCAGGAAAGACTGAAAGTGGAGCTAACAAAGACTGCCACGTAACAccaaatgcaaaattaaaaaaaacaagtgggGTTTTCATTATTACAGCCTCATTTTAGAGGCAAGTACAAGACAACAAATGGCATTAATCACAATATAGGACGCGGAGGCCTGCCGCTTCATCAGTGCCAAGGCCCTTTGTGATAGACAAACACATTAAATCTGTGTTTCTAGTTAACAACGGTTGCCCGAAAGTCTTAAAGAAGAGGAACATTTGATATTTGGAAATAAATCAAT
>XM_043236575.1
tttttatcgcaaACACAGACACGCATGCTTTCCACCGAGATCGGGAGGAACAGTCACCCTTGGCAGGATGCATGCTGTGGGCCTCTGATGTAATTCCCTCATGCTTCCTGTTGGTGCTTAACCCTGATACACCTCCCACATCCCAACGCTGCTTATAAATACAAAAGAGAGGGATGCTGGCCCCATTAAGATAGTCCGGCTTCATAGACATGGACAAAATGTGCCTTTAAGCGCATGTCTGGCATGGATGCACCCTATTCTTGTGGAACTTCTCTCAAACTTAACAGagGAAAGACAAGCCAAGCAGATTTTCACAGGCAAACAAATCAGGCAATATATGATGGACGAGTGTTCTAATGAAAGCGATTATCTCGTGTCGCGACGCATCTACTCCAACCAGGTCTTTGACCGGGTTCATGAGAGACAAGCCCGAGAGATCCAGAGTTTACGAGAGCGGCTGAGCAGAGCCTGCGTATGCACTGATAAATGGGCTGTTCAGAAGATAAAGGGGCTTCTGCCAATCCTGGATTGGCTCCCTAAATACCCAGTCAAGCAATGGCTACCTGGTGATGTTGTTTCTGGGGTCACCACAGGACTAGTATGCTGTTTACAAGGTGTGGCTTATGCATTGCTGGCTTCTGTAGCACCAGTCTATGGACTCTACTCTGCATTTTTTCCTATTCTTACATACTTTGTCCTAGGCACATCCAGACATATCTCTGTGGGTCCATTCCCTGTCACCTGTCTGATGGTGGGCTCTGTAGTTTTGACCTTAGCTCCTGATGAACACTTCCTGCGTCCAGGGAACTTCACAGGTGTGAATGAGACGGTGGCAGATAAAGGGTTAATGGAGGTTGATGTAGAGGCAAGAGAGGCCCAGAGAATCCTGGTGGCTTGTACCATGACAGTGTTGGTTGGACTATTTCAGGTGGCTATGGGGCTGATGCAGGTGGGCTTTCTGGTCAGATATCTCTCAGACCCACTAGTAGGTGGGTTCACCACTGCTGCTGCATTTCATGTCTTCATCTCTCAGATTAAAACCATTGTGTCTGTTCCTATACACAACCATAACGGATTCTTCTCCCTTGCTTATACTCTCATTGATGTAGCTAGGAACATCAACCAAACGAATATTGCAGACCTGATTGCTGGATTACTAACAATCTTCATTGTTATGGCTGTGAAAGAGATCAACACAAAATTTCAGCATAAAATCCCAGTGCCGATTCCCATAGAAGTGATTGTGACAGTGATAGCTTCTGCAGTCTCTCATGGGATGGACCTAAACTCCCAGTACGGCGCCAGCATTGTCCACAGCCTCCCAAGGGGGTTTAAACCACCACAAATACCAAACATAGCACTCATCGGGAATATTTTGGGCTCTAGTTTTTCCACAGCAGTGGTTGGTTATGCGGTAGCAGTCTCAGTGGCAAAAGTCTATGCTGCAAAACACGATTACACAGTAGACGGCAACCAGGAGCTGATAGCCTTTGGCATCAGCAATATTTTTGGAGGATGTTTCTCAAGTTTTGTGGCCAGCACCGCGTTGTCGAGGACAGCAGTGCAGGAAAGCACAGGGGGGAAGAGTCAGGTTGCTGGTATAATCTCAGCTCTGATGGTGATGATAGTGATTTTGGCCCTTGGGCCATTTCTTCAGCCTTTGCAGAAGTCAGTGCTGGCTGGCATTGTTATAGCCAACCTGAAGGGCATGTTCATGCAGATGTGTGAAGTGCCTGTTCTCTGGAGGCAGAACCGAACAGACTGTCTCATCTGGATAGCTACATGCCTGGCATGCATTGTGCTGGGTTTAGATGTGGGTCTGCTGGCTGGTCTGGTATTTGAGATGGGCACAGTGGTGGTCCGAACGCAATTCCCTCATTGTGCCACTCTTGGAAATGTCCCAAATACTGATATCTACAAAAACATGAAGGACTACAAAAGTATTGATGAAATTCCTGGAATAAAGATCTTCAAGTGCAACTCACCCATTTACTTTGCAAATATTGATTACTTCAAAGAGAAGTTAAGAGAAGAGGTGGGGTTTGATGCAGTGCGGGTGttcaagaaaagaaataaagcttTGAAGAAGATTTACAAActcattaaaaaaggaaaactacAAGCTACAGAGGATGGTTTGGTGCCAACCAAAGTTGAAAGTTTTGGAGTTGAAAACCAAGCCTTTGAAAAAGACCAGGGTCCTGAGCTGGAGGAAGGAGCGCCTCAGCCAGACTCAGAGGTGAAGGTTGAAGTAGACTGGACGTCTGAGCTGCCTGTCAGCGTGGCGGTACCCAGGGTCCATATTCACAGCCTCGTGGTGGACTTTTCTGCTGTCTCATTCCTGGACGTGGTAGCAGCCAAGTCCCTCAAACTGATTTCACAGTTGCAAGATGACAAAGAGCCACTTTCTTTTGATGACGACGATAAGGACCTGATTGAGACCTATGACATCCAGCACTTGGCTATTTATGGACTTTCAAACTGAGTAAACACTCCCTTTGTTAAAAACCGCTGGGAGAGACAGTCATCGCAGACCCCCGATTCATCTGCAGATAATAGGTCAGGGGACATCCAGGAAAGACTGAAAGTGGAGCTAACAAAGACTGCCACGTAACAccaaatgcaaaattaaaaaaaacaagtgggGTTTTCATTATTACAGCCTCATTTTAGAGGCAAGTACAAGACAACAAATGGCATTAATCACAATATAGGACGCGGAGGCCTGCCGCTTCATCAGTGCCAAGGCCCTTTGTGATAGACAAACACATTAAATCTGTGTTTCTAGTTAACAACGGTTGCCCGAAAGTCTTAAAGAAGAGGAACATTTGATATTTGGAAATAAATCAAT

Function

symbol description
slc26a4 Predicted to enable anion transmembrane transporter activity. Acts upstream of or within anion homeostasis; chloride transport; and response to salt stress. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Pendred Syndrome; autosomal recessive nonsyndromic deafness 4; and goiter. Orthologous to human SLC26A4 (solute carrier family 26 member 4).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0009651 response to salt stress biological_process
GO:0055081 anion homeostasis biological_process
GO:0055085 transmembrane transport biological_process
GO:0008272 sulfate transport biological_process
GO:0006821 chloride transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008271 secondary active sulfate transmembrane transporter activity molecular_function

KEGG:

id description
K14702 SLC26A4, PDS; solute carrier family 26 (sodium-independent chloride/iodide transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236573.1 True 3050 mRNA 0.46 21 9545687 9554560
XM_043236574.1 False 2889 mRNA 0.46 21 9546318 9554560
XM_043236575.1 False 2851 mRNA 0.46 19 9545685 9554560

Neighbor

gene id symbol gene type direction distance location
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding upstream 171867 9355967 ~ 9373818 (+)
LOC122343440 NA coding upstream 212637 9324900 ~ 9333048 (+)
LOC122343441 LOC107553872,LOC107593900 coding upstream 222063 9317580 ~ 9323622 (+)
gnptab gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515 coding upstream 503829 9024477 ~ 9041856 (+)
cwf19l1 cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857 coding upstream 530429 9010162 ~ 9015256 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding downstream 2269 9556829 ~ 9576961 (+)
bik NA coding downstream 27009 9581569 ~ 9584512 (+)
impdh1b impdh1b,LOC107725554,LOC107590397,LOC107695905,LOC107553880,LOC107664878,LOC107732997 coding downstream 86688 9641248 ~ 9654380 (+)
LOC122342846 ppfia4,LOC107675841 coding downstream 161050 9715610 ~ 9722466 (+)
LOC122342860 ppfia2,LOC107694182,LOC107755902,LOC107680027,LOC107749078 coding downstream 168547 9723107 ~ 9743552 (+)
G27498 NA non-coding upstream 8598 9536610 ~ 9537087 (+)
G27407 NA non-coding upstream 50032 9495434 ~ 9495653 (+)
G27406 NA non-coding upstream 55993 9489070 ~ 9489692 (+)
G27405 NA non-coding upstream 58109 9487361 ~ 9487576 (+)
G27404 NA non-coding upstream 60030 9485293 ~ 9485655 (+)
LOC122342620 NA non-coding downstream 400 9554960 ~ 9556718 (+)
LOC122342587 NA non-coding downstream 105927 9660487 ~ 9673677 (+)
G27562 NA non-coding downstream 131939 9686499 ~ 9872003 (+)
G27643 NA non-coding downstream 708309 10262869 ~ 10264200 (+)
G27651 NA non-coding downstream 732918 10287478 ~ 10365571 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other upstream 23652 9504080 ~ 9522033 (+)
cfap54 cfap54,LOC107695893 other upstream 149928 9381542 ~ 9395757 (+)
G27360 anks1b other upstream 318473 9163147 ~ 9227212 (+)
apaf1 apaf1,LOC107744928 other upstream 324639 9038638 ~ 9221046 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other upstream 527352 9015841 ~ 9018333 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other downstream 22755 9577315 ~ 9578574 (+)
G27490 NA other downstream 32759 9587319 ~ 9590318 (+)
G27629 NA other downstream 603599 10158159 ~ 10257553 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other downstream 811152 10365712 ~ 10367925 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other downstream 924881 10479441 ~ 10507554 (+)

Expression


Co-expression Network