LOC122342621 (zbed4,LOC107744591,LOC107663563,LOC107563622)


Basic Information

Item Value
gene id LOC122342621
gene name zbed4,LOC107744591,LOC107663563,LOC107563622
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15136921 ~ 15143411 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236577.1
TTGCCGGACAGCCCCTGAGAGAGACCCTGGGGTCAAGAAACCCCGTGTGTTTGCTTTAGTAAACCCTTATTATTTGTTATCTGTGGTGTGAATGTCCATGCGTAAGTATGCAAATTGTAGAATCAAATACTTcgtaattttatttacatggtTATGGTATCTTATCGACTATAGGATGGAAATGACggtagttttgttttattaacccCACCCACTATATCGAAAGCTTCTGTGACGCCATAGAGCCATGTTTCTTCCGTCTGACGCCGTGTGGCGCTACTACAGCGCACTGTTTACGGCACAGGAGACAAAGCAACCAACTCAATTACAACACTGGATCAACCGTGCgctttatttaaccatttcacAGCCGAAACTAACCTCAGGACACAAAAGGTTCTACAAATGAACACAAGTGATTTACACTATCCTAAATGGAGGTCAACATATCTGTTGCATCTGCACTCAGATAAAACATGTTAAAGTAAACATCTGGATGGAAGAGAGAGCCACACCCATGACACTTGAACACTTACAAAGCTGCTTTGAATAGAGAAGGTTTTCTTTCCCTGCAGAATTTTTTTCTGCGATAATGGACGGAGAGGACGGCCTCTCACAGAAGACTGAGGATACAAGCCACGAGCATAATGGCTCCAAAGATAACAAGAGAATAGAGGCCAAAGGAACCTGTTTAAAAATAGAAGGGAAAGATGGTTATGTGTTTAAATCATACAGAATTACTCCACAAGAGGTTTTGGAAGCAGAACCCCACACTTGTCCCTCTGAGACCGTAACAAAAGATTCCTCTGTGGTGTCTTTGTCATTTGAGGGCACAGAGGAAGATGGATCTTCTGAGGTCGATGGACTTTTAGCAGAGGATTCAACAGCAGAAAGTTGTGAAAAGCATGACTCTCAGACATCTCcatctatttcaaataagagccagaacattgaaataaataattcagaaatTGAAACAAGTGTATGTATCAAAGCAGAACCAAATGAAACGGGTGAAATTGCTCAGGATGATGAAAAGTTATCATTTGATGGGGCCTTCGGCCCCTTTGCCACCAGAGgttatgatgatgattatgGTAGTTTGTTCAGTGGGTACTCAAGTACTCTGTATGATGTTGCAATGGATGCTGTCACACAAAGCCTTCTATCATCCATAAGAAGTCCCCTTAACCCTAGAAAAAAATTCCCTGCTTGGAACCATTTTTTCATATCACCACGTGATAGTACCAAAGCAatctgtatgtactgtatgaaaGAGTTCAGCCGGGGAAAAAATGAGAAAGATCTCAGTACTAGTTGTTTAATGAGGCATGTGCGAAGGGCTCACCCAACTGTTCTTCTGCAAGACAGTGACTCAGTAAATAATTTGTCCAATAATTCATCTTTAATACCTCCCAATTTATCACCAAACAATGGAGACTTGTCTGTATGCATCAAGCCCCCTACAGACAACCTTAATCCACTGTCCTCCATTCTAGCTGAGGCCACAGACGTAGTGTCCAAAGACTCTTTACAAAAGGTCAAACCAAAATCAGAAAAGAGCATCAAAAGTGACTCTTGTGTGGTTCCATCCCCACATTCCTTAAACAACCATAATGATGATGCCGCCACAGACTTGGGGAGTGAATGCCCTGGATCAGCCCCTAAGAGTTCAAGTTCACGGCGGCGCTCAGCAGTAtggaaacacttttatttatccCCTGCTGACAGCTCGAAAGCAGTGTGTATTCACTGCATGAATGAATTCAGTCGTGGCAAAAATGGGAAAGACTTGGGAACGAGCTGCCTTATTCGCCACATGTGGCGGGCCCATCGAGACATAGTCATTGAAGAAAATGGACAGGGCTCAAGCATTCCTCCGCCTTACACCACTCCACCAACATTTCTCTCACGCACACAAGACTCCACAGAGGTCAAAAAGGAATTCCTCTGTACCTCACATCGCTCTGATGCCATATCAGATGAAGTGCCCATTGATGACAGTGAGCACATGCCTCTTGAGGATGAAGCAAATGATGCTACATATCAATCTGGACAAGAATCCTTACTTGATGCATCTTTTAGACTGAAAGGGGAAAATATACCTCTGTCATCCTCGCCAGAGGAACACATTGAGGGGCACAGCATATCCCAAGATCACAGCTCAGtttttcaacaaaacaaaaaaataatgaaacggGTGAAATCAGAAGTATGGCATCATTTCATTGTCTCTCCTGTTGACCAACTCAAAGCTTTGTGTCGGTATTGTCCCTGTGTTATAAGCCGTGGTAAACGAGGGGACTTTGGCACAAGCTGTCTAATGAGACATTTAATGCGACGGCATCCTGATGTTCTCAAAAcccaaaaaagcacaaatgacAAAGTTTCCTCACCTCAGTCTCCCCATTGTTCTCCTGCTGCAGAGGACGACATGACAACAAATGCAACAGACAGCCCTGCTGCTGAAAACAAACACCACACCCTGCCTGTTTTCAGCAAAAAGACTTCAAAGCTATGGAATCACTTTTCTATTTCCACTGCAGACCCAACAAAGGTGGTCTGTTTGCACTGTAGCCGCACAATTAGCAGAGGCAAAAAGACAACCAATTTAGGCACTAGTTGCTTATTTAGGCACATGCAGAGATTTCACGGGCATGTGCttgaaaataatagtaatatctCAGGTGATGTGTCATCTGCTGAAATTCAAGTTAAGCATGAGCTCATGGACATTTCTACTTATGAGGAGAATTCAGAGAAGTTCACTGAATGCCACCCAGCTGCCAAAAAAATCACCAAACTCATTGCTGAAATGCTTGCACTGGATCTTCAGCCATCAACTGTAGTGGAAAATGTTGGCCTGAACCGACTACTGGAATACCTCCAGCCACAGTATTCTCTACCTTCCTCATCCTACTTTACCAGCACTGCAATCCCAGAAATGTATGGAAGTGTGAAAGAAGTAGTTCTGACCCACCTCAAGGAGGCTGAAGGTGGAATCATTCATTTCACGACAAGTGTTTGGGTGAGCAGCCAAACTCAAGAGTACTTGATTCTTACAGCCCACTGGGTAACATTTGAGTCTCAAGTTCTGCCTCAGGGGCAAGATTTCCACTGCTCAGCCCTCCTTGGTGTTTCTTCAATTGACTGTGACTACAATGTAATGAACATACAGAAACAGCTTGAATATCTTTGGGACACCTGGATTGGTTCCTCAGGCCTTAAAATTGGATTTACTGTAACGGATAATCAAACTATTGGAAGCATGCTAGAAAGCAGTGATCACACCACCATGCAGTGTTTTGTTCATAGCATAGACCTCATTGTTAACGAAGCCATAAAAAGTCAGAGAATGGTTCAGAACTTGCTTAGTATTGCTCGGAAAATTTGCGAGAGAGTGCATCGTTCTGCTAAAGCAAAGGAGAAGTTGGCAGAGCTGCAAAAAACTTATCAGTTACCTGAAAACCAGCTGGTTCAGGATGTTCCCTCTAAGTGGAAAACATCATATTTTATGCTTGAGCGATTAGTAGAGCAAAAGAAAGCCATCGATGAGATGTCAATAGAGTGCAGTTTCAGGGAACTGATAAGCTGTGACCAGTGGGAAGTCATGCAGTCAGTCTGCAATGCTCTTAAGCCTTTCGAGGTAGCCTGCAGGGAGATGAGCAATCGCACAGCAACACTAGGTCAGGTCATTCCACTCATTCACATACTGAACCGAAAAATAGATATGCTTTTTGATGAGACCATGGGTATTGATAATATGCTCAAGTCTTTAAAGGAAGCAATGGTGACTAAAATGTCCCCTACACTTCATGACCCAAGGTACATATGGGCAACCATGTTGGATCCGAGGTATAAGACCTCCCTTTTTACTGAGGAAGAAGCAGAGCAGTGTAAGCATGACCTCATACAAGAGCTTGAGGTGTCTGTATCTAATTCTGTGGAGACTAAACCACCACTGTCAAATGGATGCAGTGAAATACCAGCTTCATCAAACAGCCTGGCCTCAAACAAAGAAAACCTATGGGCTCTTATGGATGACATTAGACAGAAAATCAAGCAGGAGGAGAGACCAAAATCATTGGAGCTTGCAGTGCTGGAGTATTTGGAGGAAGACATTCTTGACCAGAGTTGTGATCCTCTGGATTATTGGAACCTAAAGAAGTTACTGTGGCCTGAACTTGCCAAAGTAGCTGTACGCTATGTGGGTTGTCCACCCAGCATTGTACCAGCAGACACACTTTTTAGCACATCAAGTGTCAACTGTGCCCTGAATCAGTCCCGGCCATTGCTAGAAAACCTTGAAggacttctttttttaaaggtcaaCCTTCCTTTGATATATTTTCAGTACTGATGATTGCGTATTTATATTTGCAAGGCTGTTTCTTAGATTATGAACTTCAACCTAGGACCACTCAAGTAACTTTTCTGAGAAGGCCTAActaaacaattcattttacTGAGGTTCATGTTCTTCAATACACAAAGCATTTGGatatttaattgaatgaaaGATTGATTGAGTACTACTGTTAAGTACACTTGATAACTGGAGTCTTATTCCTGGTGAAAAGTGTTTTCAGGGAGGGAGGGTTAGCTAGCTATATGGGTAGTTATTGTTTGTTGCTGTATTTTGATTccttttataaaatttattgtATCTTTGTCTTCTCTCTCCTTGTGCCTTATACAAACTACTTCAGGTCAACATGCTGTAAATATTAACTGATGTGCAAAGCAAGTCATAGTCttctgatttaaatgattttataaaattgaaACTACATGCtgaatactgtttttatataaatacatggcccaaaataaatgctgtgactgagagatgttttaaatgtattttatttaattgtgatttttgtggTAAATGGTACTGTTAGaattagttctttttttctttttgctgattttgtttgtagctattaaaatgtacataatgcTGTACTTTCAGGTTAATTTTTTGTgaagcacaaatgttttttttttttttatctaaggGTTTAAATTATGAGACATTAAGgaaatgtactgtacattttataaatttccaaaatataatttgacagaggaataa

Function

symbol description
zbed4 Predicted to enable DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be located in nucleus. Orthologous to human ZBED4 (zinc finger BED-type containing 4).

NR:

description
PREDICTED: zinc finger BED domain-containing protein 4

GO:

id name namespace
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K24640 ZBED4; zinc finger BED domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236577.1 True 5098 mRNA 0.41 2 15136921 15143411

Neighbor

gene id symbol gene type direction distance location
LOC122342863 cpne8,LOC107569221,LOC107666208,LOC108279828,LOC101886030,LOC108427072,LOC108244036 coding upstream 329555 14784476 ~ 14807366 (+)
LOC122342644 tbc1d22a,LOC107721154,LOC107689730 coding upstream 374949 14758492 ~ 14761972 (+)
LOC122342641 tbc1d22a,LOC107689730 coding upstream 382564 14725899 ~ 14754357 (+)
gramd4a gramd4,gramd4a,LOC107721158,LOC107689728,LOC107710742 coding upstream 1021613 14074263 ~ 14115308 (+)
celsr1a celsr1a,LOC107569230,LOC107710744,LOC107666207,LOC107689740 coding upstream 1071240 13994130 ~ 14065681 (+)
creld2 LOC107730684,LOC107699369,LOC107601011 coding downstream 5722 15149133 ~ 15157634 (+)
LOC122343379 ppm1j,LOC107668166,LOC107708158 coding downstream 198851 15342262 ~ 15355555 (+)
nup50 nup50,LOC107699201,LOC107562145,LOC107687567,LOC107601009,LOC107719874 coding downstream 452250 15595661 ~ 15602006 (+)
LOC122342219 LOC107554691,LOC107656224 coding downstream 495101 15638512 ~ 15644874 (+)
LOC122342595 NA coding downstream 1231165 16374576 ~ 16377941 (+)
G28745 NA non-coding upstream 22393 15114111 ~ 15114528 (+)
LOC122342648 NA non-coding upstream 272821 14863033 ~ 14864100 (+)
G28726 NA non-coding upstream 282170 14834630 ~ 14854751 (+)
G28667 NA non-coding upstream 327260 14808597 ~ 14809661 (+)
G28503 NA non-coding upstream 1144090 13992023 ~ 13992831 (+)
LOC122343380 LOC107699369,LOC107730684,LOC107601011 non-coding downstream 196207 15339618 ~ 15341504 (+)
G28797 NA non-coding downstream 230699 15374110 ~ 15374537 (+)
G28813 NA non-coding downstream 344665 15488076 ~ 15492182 (+)
G28882 NA non-coding downstream 581781 15725192 ~ 15725554 (+)
G28888 NA non-coding downstream 594057 15737468 ~ 15737762 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other upstream 654100 14400029 ~ 14482821 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other upstream 842303 14177430 ~ 14294618 (+)
trmu trmu other upstream 1145149 13985517 ~ 13991772 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other upstream 1175823 13882894 ~ 13961098 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other upstream 1703315 13405929 ~ 13433606 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other downstream 14344 15157755 ~ 15214432 (+)
LOC122342869 NA other downstream 269736 15413147 ~ 15420303 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other downstream 295923 15439334 ~ 15555682 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other downstream 422088 15565499 ~ 15655278 (+)
G28891 NA other downstream 697961 15841372 ~ 15841855 (+)

Expression


Co-expression Network