alg12 (alg12)


Basic Information

Item Value
gene id alg12
gene name alg12
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 15143788 ~ 15148210 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236578.1
GCATGCGCTGGGACAGTACTACTGGTACAGCGCGCTATTATGGCTCAAAAGGAAGCTGTAAACGAGCgtcctcttttatttttaataatttgtattgtatttatacatttgtttatctGTCCTTACACCAAAGTTGAGGAAAGTTTTAACTTACAAGCAATTCATGATGTTCTGTATCAcagatttgattttgaaaagTATGACCATCATGAGTTTCCTGGTGTGGTTCCACGTACCTTTCTTGGACCCCTGTTCATATCCGCACTCAGTGCACCAGTGATTTGTGTGCTTGCCCTCTTTCAAATACCAAAGTTTTACACTCAGATCCTTGTGAGAGGAGTTCTTGGACTCTGTGTGATTCTGTCACTATGGCATATGCAAAGAGAGGTCCGCAGGCGGTTTGGGTCAATGGTGGCCAGTCTGTTTTGCTTTATCTGCATCACACAgtttcatctgatgttttaCAGTACCAGAACCCTCCCAAATGTGTTTGCTTTGCCTTTAGTTTTGCTGGCATTCACATCTTGGTTGGGCCAGAGACACGGTGCCTTCATTTGGCTTTCCGCTTTGGCTATTATTGTGTTTCGCTCTGAATTGTGTCTCTTCTTTGGCTTGATGTTGTTGATGTCACTCCTGAGCAGGAAACTTCATTTTCTACAGTTGATTTACCATGCCGTACCTGCTGGTGTTTTATCTTTGGGTCTCACTGTCATGGTTGACACAGTTTTCTGGAATAAGCTGCTCTGGCCTGAGGGTCAGGTACTATGGTACAACACTGTGTTGAATAAAAGTGCCAACTGGGGAACTTCCCCATTTCTGTGGTACTTCTACTCTGCTCTCCCTCGAGGTCTTGGCAGCACAATACTATTTATTCCACTTGGCCTGATGGATAGACGAACAAGAAAACTGCTCATTGTAACTATAGGCTTCATTCTGCTATACTCCTTTCTGCCCCACAAGGAGCTCCGTTTCATCATCTACACCTTTCCTGTGCTCAATATGATTGCTGCCTGCGGCTGTTCCTTTATTTTGAAGAATTACCACAAGTCATGGATGTATAAAATTGGCTCCATAGCTATGGTAGGACATTTGATGCTCAATGGAATATACACAAGTATTTCTCTTTACGTTTCCCATCACAACTACCCAGGAGGCAAAGCAATGCAGGAGATACATAGAATAATTCCAGCAACAGCAGATGTGTCATTGCACATTGATGTACTTGCTGCACAGACGGGAGTCTCACGTTTTCTGGAGCTAAATAGTAAATGGAGATATGACAAGAAGGAGAATTTGACTTTTGAAGATGCAGTCATGAAAACGTATTCACACCTGTTAATGGAAGCAAATGCAACTAAGATATCGCTGCTCAAAGACTCTCACAAACCTTTGGTCGTTTTCTCAGGATACCAAAATCTTGTGTTTGAGATGTCCCAATTTCCACCTATCAAAATCAAGCTAAACAATAAGCTTGTGCTGCTAGCAAGACACTCAAATAATGAACACAGATAGTAAACTGaaattgttataataaaaatatttcatatgcaaagacggatacaaataaatgtttacgtAGTGGTTCTCTGAATAATTTTAATGGTCTGTTTTACTGGGAGGGTAGATGTCCTTAGTTAAGGTGTTTCAGTAGCTTGGTCATTTGCTCACTGCTTCCTTTTGTAATCAATTGAAACATGTTATTGCTATTAAATGTGCTATGGAAGGTCA

Function

symbol description
alg12 Predicted to enable alpha-1,6-mannosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within dolichol-linked oligosaccharide biosynthetic process. Predicted to be located in endoplasmic reticulum. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Ig. Orthologous to human ALG12 (ALG12 alpha-1,6-mannosyltransferase).

NR:

description
dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase

GO:

id name namespace
GO:0006488 dolichol-linked oligosaccharide biosynthetic process biological_process
GO:0097502 mannosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0000009 alpha-1,6-mannosyltransferase activity molecular_function

KEGG:

id description
K03847 ALG12; alpha-1,6-mannosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236578.1 True 1728 mRNA 0.41 9 15143788 15148210

Neighbor

gene id symbol gene type direction distance location
brd1a brd1,LOC107744592,LOC107563621 coding downstream 7249 15124045 ~ 15136539 (-)
LOC122342646 prkcq,LOC107748461,LOC107555829,LOC107675981 coding downstream 296611 14826267 ~ 14847177 (-)
LOC122342645 abcd1,LOC107743108,LOC107701814,LOC107552221,LOC107727428,LOC107674359,LOC108265308 coding downstream 321127 14811008 ~ 14822661 (-)
LOC122342640 cerk,LOC107689729,LOC107552286,LOC107710741,LOC107600034 coding downstream 418581 14704793 ~ 14725207 (-)
srr si:ch73-263o4.4,LOC107569226,LOC108427077,LOC107666211 coding downstream 1158342 13982356 ~ 13985446 (-)
LOC122342488 LOC107744205,LOC107601002,LOC107699198,LOC107687568,LOC107562147,LOC107741716 coding upstream 407041 15555251 ~ 15588908 (-)
large1 large,LOC107600999,LOC107719870,LOC107687564,LOC107699203,LOC107758207,LOC108425352,LOC103363517 coding upstream 464908 15613118 ~ 15632452 (-)
sapcd1 LOC107758208,LOC107687577,LOC107601016,LOC107719876,LOC107699195,LOC107562141 coding upstream 495979 15644189 ~ 15647843 (-)
slc37a3 slc37a3,LOC107601005,LOC107758206,LOC107562143,LOC107719875 coding upstream 507865 15656075 ~ 15664306 (-)
zgc:171422 LOC107687561,LOC107758203,LOC107719867,LOC107671497 coding upstream 516233 15664443 ~ 15673234 (-)
LOC122342397 NA non-coding downstream 119925 15017785 ~ 15023863 (-)
G28738 NA non-coding downstream 140359 15003149 ~ 15003429 (-)
LOC122342647 NA non-coding downstream 317950 14811440 ~ 14825838 (-)
G28597 NA non-coding downstream 1069262 13994018 ~ 14074526 (-)
G28789 NA non-coding upstream 61474 15209684 ~ 15213451 (-)
G28850 NA non-coding upstream 268646 15416856 ~ 15418238 (-)
LOC122342747 NA non-coding upstream 295554 15443764 ~ 15445229 (-)
G28870 NA non-coding upstream 417209 15565419 ~ 15655181 (-)
G28887 NA non-coding upstream 585153 15733363 ~ 15733883 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other downstream 116125 15024587 ~ 15027663 (-)
LOC122342642 pfkfb3 other downstream 333077 14808543 ~ 14810711 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other downstream 439166 14687873 ~ 14704622 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other downstream 967046 14155492 ~ 14176742 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other downstream 1163229 13975357 ~ 13980559 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other upstream 453230 15601440 ~ 15611575 (-)
G28898 NA other upstream 784284 15932494 ~ 15932864 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other upstream 1559564 16707774 ~ 16708960 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other upstream 1737943 16886153 ~ 16900295 (-)
G29135 NA other upstream 1858717 17006927 ~ 17017823 (-)

Expression


Co-expression Network