tprkb (tprkb,LOC107726833,LOC107666212,LOC107721157,LOC107569227,LOC107600017,LOC107689748)


Basic Information

Item Value
gene id tprkb
gene name tprkb,LOC107726833,LOC107666212,LOC107721157,LOC107569227,LOC107600017,LOC107689748
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13980776 ~ 13982174 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236608.1
CTTCCGCATAAATACTCGATACCATAGTTTATGTAGTTGTCATGATCTttataaactgtatatattaattaatgtgggtgctttttaataaattaattatcgACTACGCAATTGCATAGACAGCCAATTTGGAACATTCTTATCAGCAAATGACGGTGTCACATTATTATTGTTCCGTGTGTGACCGCTCAGGGTACCACATGCTGTCTAGATAAAGTCCTTATTGTACTGAAGACATTAAAGgtttaataatgcatgttaCGCAGGACTTAGAACTGTTTCCCGAATACACGGTAACTCAGCTGCTCTTCAAAGATGTAAAAAATGCGACGGAGTTGAGAAAAATGGCAGTAAACGGAGAAATAAAAGGCGCCTTGATTAACCCATCAATGGTTGTGGATGCGTTCCAGATCCTGGTGGCGGCAAACAAAGCAGTTCACCtacataaaaatggaaaaatgaaaacCCGGAGCCTTTACTCGGAAATCATTTTCAATCTCTCCCCCACAAACAACATATCCGAGGCGTTCAAAAGGTTTGGGATCTCGGACGGCGACAGCGCGGTTCACGTTGTGTTAGTACACGGCAAAGACGAGACCCTCGACGTCGATGGAATCGTCTCAAAGGTGGACGGGCAACAGATTGCCGTTGATCGAGTGTCGGGTTTAACTGATGTTGCGAAGATTAAAAAGCTCTACAAAGTCGCACCGCAGGAGGAAAAGTGCGGCAGCCTTTTGGACGCGGTTGTTTGCAGGATGGCCACTAAAGATGTCGCGTAGATGCGTCGATATGTTGATATatctctattttaaataaaaccaactTCACGAA

Function

symbol description
tprkb Predicted to be involved in tRNA threonylcarbamoyladenosine modification and telomere maintenance via recombination. Predicted to act upstream of or within tRNA processing. Predicted to be located in cytoplasm. Predicted to be part of EKC/KEOPS complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 5. Orthologous to human TPRKB (TP53RK binding protein).

NR:

description
EKC/KEOPS complex subunit TPRKB

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K15901 CGI121, TPRKB; EKC/KEOPS complex subunit CGI121/TPRKB

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236608.1 True 831 mRNA 0.42 4 13980776 13982174

Neighbor

gene id symbol gene type direction distance location
LOC122343277 kif21a,LOC107689724,LOC108427070 coding upstream 102053 13847292 ~ 13878723 (+)
LOC122343278 LOC107689245,LOC107689723,LOC107566844,LOC105891163,LOC106575983,LOC106609116 coding upstream 138229 13832132 ~ 13842547 (+)
LOC122343279 LOC107689243,LOC107689721,LOC107716183,LOC106575984,LOC108427068 coding upstream 153712 13789644 ~ 13827064 (+)
LOC122343498 LOC107726847,LOC107689239,LOC107597006 coding upstream 307067 13669773 ~ 13673709 (+)
LOC122343497 parp11,LOC107726831,LOC107689238,LOC107597042,LOC107748476,LOC107584716,LOC108280019 coding upstream 311143 13665659 ~ 13669633 (+)
celsr1a celsr1a,LOC107569230,LOC107710744,LOC107666207,LOC107689740 coding downstream 11956 13994130 ~ 14065681 (+)
gramd4a gramd4,gramd4a,LOC107721158,LOC107689728,LOC107710742 coding downstream 92089 14074263 ~ 14115308 (+)
LOC122342641 tbc1d22a,LOC107689730 coding downstream 743725 14725899 ~ 14754357 (+)
LOC122342644 tbc1d22a,LOC107721154,LOC107689730 coding downstream 776318 14758492 ~ 14761972 (+)
LOC122342863 cpne8,LOC107569221,LOC107666208,LOC108279828,LOC101886030,LOC108427072,LOC108244036 coding downstream 802302 14784476 ~ 14807366 (+)
G28486 NA non-coding upstream 152239 13828025 ~ 13828537 (+)
G28446 NA non-coding upstream 220664 13757967 ~ 13760112 (+)
LOC122343375 NA non-coding upstream 460319 13516630 ~ 13520457 (+)
G28312 NA non-coding upstream 467183 13510856 ~ 13513593 (+)
G28298 NA non-coding upstream 510641 13467404 ~ 13470135 (+)
G28503 NA non-coding downstream 9849 13992023 ~ 13992831 (+)
G28667 NA non-coding downstream 826423 14808597 ~ 14809661 (+)
G28726 NA non-coding downstream 852456 14834630 ~ 14854751 (+)
LOC122342648 NA non-coding downstream 880859 14863033 ~ 14864100 (+)
G28745 NA non-coding downstream 1131937 15114111 ~ 15114528 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other upstream 19678 13882894 ~ 13961098 (+)
G28249 LOC107689220,LOC107755152 other upstream 450145 13323288 ~ 13530631 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other upstream 547170 13405929 ~ 13433606 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other upstream 665092 13305669 ~ 13315684 (+)
kin kin,LOC102791470 other upstream 826418 13150736 ~ 13154358 (+)
trmu trmu other downstream 3343 13985517 ~ 13991772 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other downstream 195256 14177430 ~ 14294618 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other downstream 417855 14400029 ~ 14482821 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other downstream 1175581 15157755 ~ 15214432 (+)
LOC122342869 NA other downstream 1430973 15413147 ~ 15420303 (+)

Expression


Co-expression Network