LOC122342641 (tbc1d22a,LOC107689730)


Basic Information

Item Value
gene id LOC122342641
gene name tbc1d22a,LOC107689730
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 14725899 ~ 14754357 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236611.1
TTTAACCAATCACAGCTGCGCTAATGTGCGGTGGGCGGTACCAACATGGCGGCTCTCTGAGTTTGCGAAGAGAAATTGAGGTGTAAATAAACTCTTCGTGCACATTTTGCACAACTTATCAGCTTATTTCGCCACATTAATTTATGAGCGAGTGCTCTGAAGCCAAAAGATGTCAGGTGACGGCAACAAAAAACAGTTCTGGAAGAGAAACACAGCCAAGGTTCCTGGGAATATCCAGCATGTTTATGGAGCCCAACATCCCCCATTTGACCCTTTGCTACATGCCAATCTGATGAAAGCAGGAAACAAGCCTCCGACTGCAACTACGCCAGGAAAACCAAAGAAAGCCACCACTTTTCAAGAGTTCGAGAGCATCACCAGCGACGCCTGGGATGTGGGAGACGACGACGACGAACTTCTCGCCATGGCGGCCCAAAATCTCAACATCGAGGTCGTCATGGAGACGGCTAATAAGGTGATCGAAAACCACAGCAAGCTGCAGGAGAGAAGACAGCAGCAGATGGACAAGATGACCGAGCCTGACGAAAAAGACGGACAGGAAGCGcacgaggaagaggaggaagagccAGACGAAGAAGACGAGAGAGAGGAAGGGGCAGAGACGACAGCAGATCTGTCTTTCAGTTTAGAGGCTCTTCCGCTCAGCGACAATAGACTGGTGAAGTCACACAGTGAAGCTCCCGTCGGCTCACCTAAAGAAGCGGGAGTTGAGCAGGCAGTACTGCACAGACAGCAGTCACTCCCGCACAGGCCTGTGATTCCATTGGTGGCCCGCATGGCAGATCAGAACACATCCGGGACTCCTGCCTTGACCGAGAGGGAGGCGTCAAGACTCGACAAGTTCAAGCAGGTTCTGGCCGGACCTAATACTGATCTGGagGAGCTTCGGAAGTTGAGCTGGTCTGGAATTCCACGGCAGGTGCGCCCGATCACATGGAAACTGCTCTCGggGTACCTGCCAGCCAATGCGGAGCGGAGAGAAAGCACCTTGCAGAGGAAGCGGCAGGAATATTTTGGCTTTATCGAGCAGTATTATGACTCCCGTAATGATGAACACCATCAGGACACGTACAGACAGATTCACATTGACATACCGAGAACTAATCCTCTTATACCTCTCTTTCAACAAGCTTCTGTGCAAGAGATCTTTGAGAGGATTCTGTTCATCTGGGCAATACGGCATCCAGCGAGTGGTTATGTTCAAGGCATCAATGACCTTGTCACACCCTTCTTCGTCGTTTATGTTTTCGAGTATATCGAGGAAGAAGTGGAAAATTTCAATGTTTCCAGCTTGCAGGAAGAGGTGTTGCGGAACATCGAGGCTGACAGCTTCTGGTGCATGAGCAAGCTCCTGGACGGGATTCAGGTAAATTGA

Function

symbol description
tbc1d22a Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D22A (TBC1 domain family member 22A).

NR:

description
PREDICTED: TBC1 domain family member 22A-like isoform X2

GO:      GO:0005097,GO:0032313

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236611.1 True 1396 mRNA 0.51 9 14725899 14754357

Neighbor

gene id symbol gene type direction distance location
gramd4a gramd4,gramd4a,LOC107721158,LOC107689728,LOC107710742 coding upstream 610591 14074263 ~ 14115308 (+)
celsr1a celsr1a,LOC107569230,LOC107710744,LOC107666207,LOC107689740 coding upstream 660218 13994130 ~ 14065681 (+)
tprkb tprkb,LOC107726833,LOC107666212,LOC107721157,LOC107569227,LOC107600017,LOC107689748 coding upstream 743725 13980776 ~ 13982174 (+)
LOC122343277 kif21a,LOC107689724,LOC108427070 coding upstream 847176 13847292 ~ 13878723 (+)
LOC122343278 LOC107689245,LOC107689723,LOC107566844,LOC105891163,LOC106575983,LOC106609116 coding upstream 883352 13832132 ~ 13842547 (+)
LOC122342644 tbc1d22a,LOC107721154,LOC107689730 coding downstream 4135 14758492 ~ 14761972 (+)
LOC122342863 cpne8,LOC107569221,LOC107666208,LOC108279828,LOC101886030,LOC108427072,LOC108244036 coding downstream 30119 14784476 ~ 14807366 (+)
LOC122342621 zbed4,LOC107744591,LOC107663563,LOC107563622 coding downstream 382564 15136921 ~ 15143411 (+)
creld2 LOC107730684,LOC107699369,LOC107601011 coding downstream 394776 15149133 ~ 15157634 (+)
LOC122343379 ppm1j,LOC107668166,LOC107708158 coding downstream 587905 15342262 ~ 15355555 (+)
G28503 NA non-coding upstream 733068 13992023 ~ 13992831 (+)
G28486 NA non-coding upstream 897362 13828025 ~ 13828537 (+)
G28446 NA non-coding upstream 965787 13757967 ~ 13760112 (+)
LOC122343375 NA non-coding upstream 1205442 13516630 ~ 13520457 (+)
G28312 NA non-coding upstream 1212306 13510856 ~ 13513593 (+)
G28667 NA non-coding downstream 54240 14808597 ~ 14809661 (+)
G28726 NA non-coding downstream 80273 14834630 ~ 14854751 (+)
LOC122342648 NA non-coding downstream 108676 14863033 ~ 14864100 (+)
G28745 NA non-coding downstream 359754 15114111 ~ 15114528 (+)
LOC122343380 LOC107699369,LOC107730684,LOC107601011 non-coding downstream 585261 15339618 ~ 15341504 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other upstream 243078 14400029 ~ 14482821 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other upstream 431281 14177430 ~ 14294618 (+)
trmu trmu other upstream 734127 13985517 ~ 13991772 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other upstream 764801 13882894 ~ 13961098 (+)
G28249 LOC107689220,LOC107755152 other upstream 1195268 13323288 ~ 13530631 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other downstream 403398 15157755 ~ 15214432 (+)
LOC122342869 NA other downstream 658790 15413147 ~ 15420303 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other downstream 684977 15439334 ~ 15555682 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other downstream 811142 15565499 ~ 15655278 (+)
G28891 NA other downstream 1087015 15841372 ~ 15841855 (+)

Expression


Co-expression Network