LOC122342644 (tbc1d22a,LOC107721154,LOC107689730)


Basic Information

Item Value
gene id LOC122342644
gene name tbc1d22a,LOC107721154,LOC107689730
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 14758492 ~ 14761972 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236613.1
TTACGCCCCGGCAGGCTGTCATCCGTGAACCCGTGCGCGCGAGAAAGCGGCGAGGAGAATAAGTGTTATTGTTGTGTCCGTCGAGCGCCTGTCATTTATTGTTCGGCCCCAGTTTTACCGAAGAGAGTGTAACGATGCTTTAATTGTTTGTGATGGACGAGCGGGGCGATTGACGTCGGGGTGGTGATTTgttatgctgtttttgtttttaacagagaCGGTGCACCGCCACATGCAGCAGTACGAGGTGGAGTACTTGCAGTTTGCCTTCCGCTGGATGAACAACCTGCTTATGAGAGAACTTCCTCTGCGCTGCACCATTAGACTCTGGGACACTTATCAGGCAGAGCCTGAAGGATTCTCTCATTTCCATCTGTACGTGtgtgctgccttcctggtgcgATGGAGGAAAGAGATACTAGAGGAGAAAGATTTCCAGGtaagatgggttttttttctgtgtgtcgTGTTGTGCGGTCCCTGAGCCGCGGTGTGAGTCGTCCTTGCGTGAGACCCCTCCTCCCTCATTAACTTGCGGGGTCGAGGGGTCAGTGCGCCTGCATTAGTGTGATGACAACAGCAGCTGCTGTAAGGTGACATTGCGTCGTCCCTTTGAGACTCTTCTGTTTCCTgtcctctctcgctctcgcttGTTCTGTGCGATTGAGAGGTAAAGGGTTTAGGCATGGAGGCTTCGAGAGGGCAGATGTGTCACCGGACGTACAATATGAGTTATATAATCAGAAGTCCCATGTCTATTACTGGATTCGAGTGGCTTACTTTCCCTCGTCCTGTCAATCACTCAACCGTCCCAGCTCAATGCCTgcaatgtgttttctgtttgtcatttttatcatttattattattattctttatttagtttttgtttaaatattcagtGTTGCAAAGCAGTGCCatg

Function

symbol description
tbc1d22a Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Orthologous to human TBC1D22A (TBC1 domain family member 22A).

NR:

description
PREDICTED: TBC1 domain family member 22A-like

GO:      GO:0005097,GO:0032851

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236613.1 True 920 mRNA 0.49 2 14758492 14761972

Neighbor

gene id symbol gene type direction distance location
LOC122342641 tbc1d22a,LOC107689730 coding upstream 4135 14725899 ~ 14754357 (+)
gramd4a gramd4,gramd4a,LOC107721158,LOC107689728,LOC107710742 coding upstream 643184 14074263 ~ 14115308 (+)
celsr1a celsr1a,LOC107569230,LOC107710744,LOC107666207,LOC107689740 coding upstream 692811 13994130 ~ 14065681 (+)
tprkb tprkb,LOC107726833,LOC107666212,LOC107721157,LOC107569227,LOC107600017,LOC107689748 coding upstream 776318 13980776 ~ 13982174 (+)
LOC122343277 kif21a,LOC107689724,LOC108427070 coding upstream 879769 13847292 ~ 13878723 (+)
LOC122342863 cpne8,LOC107569221,LOC107666208,LOC108279828,LOC101886030,LOC108427072,LOC108244036 coding downstream 22504 14784476 ~ 14807366 (+)
LOC122342621 zbed4,LOC107744591,LOC107663563,LOC107563622 coding downstream 374949 15136921 ~ 15143411 (+)
creld2 LOC107730684,LOC107699369,LOC107601011 coding downstream 387161 15149133 ~ 15157634 (+)
LOC122343379 ppm1j,LOC107668166,LOC107708158 coding downstream 580290 15342262 ~ 15355555 (+)
nup50 nup50,LOC107699201,LOC107562145,LOC107687567,LOC107601009,LOC107719874 coding downstream 833689 15595661 ~ 15602006 (+)
G28503 NA non-coding upstream 765661 13992023 ~ 13992831 (+)
G28486 NA non-coding upstream 929955 13828025 ~ 13828537 (+)
G28446 NA non-coding upstream 998380 13757967 ~ 13760112 (+)
LOC122343375 NA non-coding upstream 1238035 13516630 ~ 13520457 (+)
G28312 NA non-coding upstream 1244899 13510856 ~ 13513593 (+)
G28667 NA non-coding downstream 46625 14808597 ~ 14809661 (+)
G28726 NA non-coding downstream 72658 14834630 ~ 14854751 (+)
LOC122342648 NA non-coding downstream 101061 14863033 ~ 14864100 (+)
G28745 NA non-coding downstream 352139 15114111 ~ 15114528 (+)
LOC122343380 LOC107699369,LOC107730684,LOC107601011 non-coding downstream 577646 15339618 ~ 15341504 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other upstream 275671 14400029 ~ 14482821 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other upstream 463874 14177430 ~ 14294618 (+)
trmu trmu other upstream 766720 13985517 ~ 13991772 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other upstream 797394 13882894 ~ 13961098 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other upstream 1324886 13405929 ~ 13433606 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other downstream 395783 15157755 ~ 15214432 (+)
LOC122342869 NA other downstream 651175 15413147 ~ 15420303 (+)
G28806 LOC107744205,LOC107601002,LOC107687568,LOC107699198 other downstream 677362 15439334 ~ 15555682 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other downstream 803527 15565499 ~ 15655278 (+)
G28891 NA other downstream 1079400 15841372 ~ 15841855 (+)

Expression


Co-expression Network