LOC122342646 (prkcq,LOC107748461,LOC107555829,LOC107675981)


Basic Information

Item Value
gene id LOC122342646
gene name prkcq,LOC107748461,LOC107555829,LOC107675981
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 14826267 ~ 14847177 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236616.1
CCGACGTCACTCCTCCAGTATTGTCAAACCCCAGACACAGTGAGCGGGTAAATACTTCCTCAAACACGGCGCGCCGCTCATTCTGCTCTCAACTTACACAGGGGTAGTGAGAATAAGACACGAACTACCGAAACCTCTCGGACTTTGAAGTCGGCAGAGTGACATCTCAACATGGCTCCGTTCCTGCGGATTGCCTTCAATGATTTTCAACTGGGAGAACTACCCCCTATGACAGAGCAACCATTCTGTGCCATCAAGATGAAGGAATCCCTCAGCACAGAGCGAGGGAAGACACTGGTCCAGAGGAAGCCTACGATGTACCCTGCGTGGAAATCCACATTTGACGCACACATCTACGAAGGTCGTGTCATACAGGTGGTACTGATGAAAACGGCAGAAGAGGCTTTGTCGGAGGCAACAGTTGGGGTCTCTGTCATTGCTGAGCGCTGCAAAAAGGGAAATGGCCGCGCTGAGTTTTGGGTCGACCTGCAGCCTTCTGGGAAGGTGATGATGTCTGTCCAGTTCTTCGTAGAGGGTTCTGACTTAGAATCAAAGTCCTCAATGACTGTGAAAGAGGACGACGGCATTCTCACAATAAACAGGAGGAGAGGAGCCATCAAACAGGCCAAAGTTCACTTTATCAAGAACCACGAGTTCACAGCCACCTTCTTCAAACAGCCCACCTTCTGCTCGGTCTGCAGGGAGTTTGTTTGGGGTCTCAACAAGCAGGGCTACAAATGTAGGCAGTGCAATGCGGCCATTCACAAGAAGTGCATTGATAAGATCATTGGGAGATGCACAGGGACAGCAACCAACAGTCGAGATACAGTGTTTCAGAAGGAGCGCTTTAAGATTGACATGCCACATCGCTTCAAGACCCATAACTACATGAGCCCGACTTTCTGTGATCACTGTGGGAGTCTGCTGTGGGGAATGGTTAAACAAGGCCTCAAGTGTGAAGaGTGCGGCATGAACGTTCACCATAAATGTCAGAGGAAAGTAGCAAACCTTTGTGGCGTCAACCAGAAGCTAATGGCAGAAGCCCTGGCTATGATTGAGAGCACTCAACAGCAGGCTCGCAGCTCTCGGGATACTGAGATTGCTGGTCGAGAGGGTCCAGTGGGCGTAAGTCAAGCAGGGGTCACTAGAGAGCCTTCGGGCCGCTTACCAATATCACCCCTCACGCCTGCACCGCCTCTACCACGCAAAGAGAATCAAGGTATTTCATGGGACACTCCGGCTGAGGGCCGCAGGCCAAGTCTGGAACAGCCTGAACCCCTGTATGCCACCCCACGCAAAGAGCACCAAAAGTTCAACCTAGATAATTTTAATCTGCATAAGATGCTGGGCAAGGGCAGCTTTGGAAAGGTGTTCCTGGCTGAGCTGAAAGGCACGGGGCAGTTCTTTGCAGTGAAGGCCCTGAAGAAAGATGTAGTACTAATGGATGATGATGTTGAATGCACTATGGTGGAGAGGAGAGTGCTGTCTCTGGCCTGGGAACACCCCTTCCTCACGCATCTCTACTGCACCTTCCAGACCAAGGAAAATCTTTTCTTCGTGATGGAGTACTTAAATGGGGGCGACTTAATGTTCCACATCCNACATTTTAAAAGCCTGTTCTACGCGGCCGAGATCGTTTGTGGGCTGCAGTTTCTACATTCTAAAGGCATCGTGTACAGAGATCTCAAGCTGGATAACATCTTGCTAGACATCGATGGTCACATCAAGATCGCAGACTTTGGCATGTGCAAAGAGAACATGTTTGGAGAATCTAGAACGTGTACCTTCTGTGGAACACCAGACTACATCGCTCCCGAGATTCTGCTTGGGCAGAAGTATGGGACGTCTGTAGACTGGTGGTCATTCGGCGTCCTCCTTTACGAGATGTTGATTGGCCAGTCTCCATTTCACGGCCATGACGAGGAAGAGCTGTTTCAGTCGATTCGCACAGATGACCCCTGCTACCCACGCTGGTTAACTAGAGATGCACGGGACATCCTTGTAAAGCTATTTGTCCGCGAACCTGAACGAAGGCTGGGCGTGAAAGGAAACATACGACAGCATGCGTTCTTCAGAGACATGGACTGGAGCGCACTAGAGAAACGACAGGTGGAGCCGCCCTTCAGGCCTACTGTGAAATCAGCAAGCGACTGCAGTAATTTCGATAAGGAGTTCATAAACGAGAAGCCTCGGCTTTCCGTCACAGACTGTATAATGATCAACAGTGTGGACCAGACCATGTTCAACAACTTCTCCTTCATCAACCCCGCTATGAGCCGTCTCAAGAGCCCCTGACACGCAGACGAACGGACACTCGTGCAAATACTGTGAAAAAGTCTGAACTAATAGGCAAACACTCACCTGAATAACATATCGGCCTCTAGTCGACCTCGTTTAATGCTATATTTCGTTTTTATGACGTACTTGCCTTTTTGtgaagtaaaatgcaaaaaaacattaacagcaaaagtttcaaaaacatttttttcccttcttcaATCCTCAATCAACTAAATCATTGATTCCTTCCCTGAATCAATCATTTGTGAACGTATTGAACTGAACGGGGCTCGTTTAAATTGTATAACAGAAAAATCCCCACCGCTGCTTAAATACACAGACTGTCTGGAAATGTAGAATTGTAAGAGATGTACGTATTTGACGATGGTGTTGAATTATTAAGCCATATACTTGCGTTTCGTGAAATTTGCTGTGCGTTTTAGTGGAATGAATATGCTGTGATGTATACATAATGAATTCTGTAGGCCTTGTATAGAGTGTTGTgaatgatggaaaaaaaaaattaactacttTAAGTTGCTTCTCAGTTAGGTTCTATGCTCTTAGATTGTACAAAGTTACATGAATTCTTGGAGGTTAACGTGTGGttctttattacaaaatgaTGTTGTTTTCTGTATAGTAA

Function

symbol description
prkcq Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Located in immunological synapse. Is expressed in Mauthner neurons; brain; somite border; and spinal cord. Orthologous to human PRKCQ (protein kinase C theta).

NR:

description
PREDICTED: protein kinase C theta type

GO: NA

KEGG:

id description
K06068 PRKCD; novel protein kinase C delta type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236616.1 True 2926 mRNA 0.47 17 14826267 14847177

Neighbor

gene id symbol gene type direction distance location
LOC122342645 abcd1,LOC107743108,LOC107701814,LOC107552221,LOC107727428,LOC107674359,LOC108265308 coding downstream 3606 14811008 ~ 14822661 (-)
LOC122342640 cerk,LOC107689729,LOC107552286,LOC107710741,LOC107600034 coding downstream 101060 14704793 ~ 14725207 (-)
srr si:ch73-263o4.4,LOC107569226,LOC108427077,LOC107666211 coding downstream 840821 13982356 ~ 13985446 (-)
alg10 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 coding downstream 845652 13975805 ~ 13980615 (-)
LOC122342633 NA coding downstream 850637 13970264 ~ 13975630 (-)
brd1a brd1,LOC107744592,LOC107563621 coding upstream 276868 15124045 ~ 15136539 (-)
alg12 alg12 coding upstream 296611 15143788 ~ 15148210 (-)
LOC122342488 LOC107744205,LOC107601002,LOC107699198,LOC107687568,LOC107562147,LOC107741716 coding upstream 708074 15555251 ~ 15588908 (-)
large1 large,LOC107600999,LOC107719870,LOC107687564,LOC107699203,LOC107758207,LOC108425352,LOC103363517 coding upstream 765941 15613118 ~ 15632452 (-)
sapcd1 LOC107758208,LOC107687577,LOC107601016,LOC107719876,LOC107699195,LOC107562141 coding upstream 797012 15644189 ~ 15647843 (-)
LOC122342647 NA non-coding downstream 429 14811440 ~ 14825838 (-)
G28597 NA non-coding downstream 751741 13994018 ~ 14074526 (-)
LOC122342415 NA non-coding downstream 755862 14068087 ~ 14070405 (-)
G28594 NA non-coding downstream 833465 13992051 ~ 13992802 (-)
G28577 NA non-coding downstream 845103 13980790 ~ 13981164 (-)
G28738 NA non-coding upstream 155972 15003149 ~ 15003429 (-)
LOC122342397 NA non-coding upstream 170608 15017785 ~ 15023863 (-)
G28789 NA non-coding upstream 362507 15209684 ~ 15213451 (-)
G28850 NA non-coding upstream 569679 15416856 ~ 15418238 (-)
LOC122342747 NA non-coding upstream 596587 15443764 ~ 15445229 (-)
LOC122342642 pfkfb3 other downstream 15556 14808543 ~ 14810711 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other downstream 121645 14687873 ~ 14704622 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other downstream 649525 14155492 ~ 14176742 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other downstream 845708 13975357 ~ 13980559 (-)
LOC122343280 NA other downstream 994416 13815574 ~ 13831851 (-)
LOC122342864 rpl34,LOC107566275,LOC107573163,LOC107681344 other upstream 177410 15024587 ~ 15027663 (-)
kiaa0930 zgc:172139,kiaa0930,LOC107601010,LOC107719873,LOC107687566,LOC107699202 other upstream 754263 15601440 ~ 15611575 (-)
G28898 NA other upstream 1085317 15932494 ~ 15932864 (-)
G29022 chrna2b,LOC107697311,LOC107589091,LOC107723144,LOC107746381,LOC107563692,LOC107701496 other upstream 1860597 16707774 ~ 16708960 (-)
prkchb prkchb,LOC107743988,LOC107697294,LOC107701491,LOC107718442,LOC107589067,LOC107563690 other upstream 2038976 16886153 ~ 16900295 (-)

Expression


Co-expression Network