LOC122342653 (l3hypdh,LOC107684001)


Basic Information

Item Value
gene id LOC122342653
gene name l3hypdh,LOC107684001
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17483433 ~ 17490295 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236626.1
TGAACTTTGAAACAGAACATTAGGCTACAAACATTACAATAACATCTATACAGTGACATATGAAATAGAATTGTTTAGATAGAATAGAACAGTTTGGAGTCATGGTGATGAGATTCAGGGTTAATTTTAGTGTGATAGTGCTGTGCACGTTAGTTTCTCCATCATGTGAATGAAAACGGATCCTTAACAACTCTTCTTATAGTGCTCTATGGAGTTCCCAAAGCTGCCCCCTCACTCGGGCCCTGTGCTCTCAGTAGTGGACATGCACACAGGCGGAGAGCCGCTGCGCATTATCCTGAGCGGCTATCCAGAGGTGAAGGGCGACACCGTCCTTGCCAAACGACGCTACGTGAGAGAGCATCTCGATCACCTCCGCAAAGTGTTGATGTTGGAGCCGCGCGGCCACTACGATATGTACGGAGCCCTGCTGGTCCGAAGTGAGTTAGCAGAGGCTGATCTCGGCGTCTTGTTTATGCACAACGAAGGGTACAGCACCATGTGCGGCCACGCTGTCATTGCTCTCGGGCGCTTTGCGGTGGATTACGGCTTGATTAAAGCGCCCGCTTCACCGGAGACGCAGATAAACATACACTGCCCTTGTGGCTTAGTGAAGGCCTTCACACAGTATTCCAACGGGAGAACCGGAGCTGTCAGATTCCACAGTGTGCCAGCCTTCGCTTTCGCTACAGATGTGAGTGTCTCGGTACCGGGATATGGGTCCATTAATGTAGACATCAGTTATGGCGGAGCTCTTTATGCTTTTGTGAGTGCTGAGAAATTTGGATTAGATGTGAAGAAGTCCAAAACCAGAGATCTGGTGGATGCAGCCACTGCTGTGAGCGATGCTGTCAAATCCCAgGTAAAGCTGTACCATCCAGTCAGCGAGGATCTGGCCTTCCTCTACGGCACAATCCTTACTGACGGCAAAGATGCTTTTTCTGAAGAGCCCACagccaatgtgtgtgtgtttgctgatgCACAGGTGGACCGAAGCCCTACGGGGTCAGGCGTCACTGCTCGTATTGCTCTTCAGTACCATAAAGGCCTGATCGAACTCAACCAGACCAGACGTTTTGAGAGCGGAGCTACAGGATCAGTGTTTACAGGAAAAGCAATAGAGGAGACCACGTGTGGGGACTTCAGGGCTGTGGTAGTGGAGGTCGAAGGTCATGCTCACTACAGCGGCGTGGCCAGCTTCACCCAAGAGACCAATGATCCTCTGAGAGGAGGCTTTCTCCTGCGCTGACCTAACGCTTACAACTGATATTTCTGCTTCTGCTTGCAGACCTGAGCCTCCATTCGTGCCCTGCGCTCCTCCTCTTCTTTGCGTCGGCGCATGTTCTCGTTCTCTTGACGGGCCTCGGAGAAGGACTGCAAGAACTGGTCGAATATCCCAAAGAACTCATCAGGCTGCATCTTAT
>XM_043236627.1
TGAACTTTGAAACAGAACATTAGGCTACAAACATTACAATAACATCTATACAGTGACATATGAAATAGAATTGTTTAGATAGAATAGAACAGTTTGGAGTCATGGTGATGAGATTCAGGGTTAATTTTAGTGTGATAGTGCTGTGCACGTTAGTTTCTCCATCATGTGAATGAAAACGGATCCTTAACAACTCTTCTTATTGTGGAGTTGTGACGAGTGCTCTATGGAGTTCCCAAAGCTGCCCCCTCACTCGGGCCCTGTGCTCTCAGTAGTGGACATGCACACAGGCGGAGAGCCGCTGCGCATTATCCTGAGCGGCTATCCAGAGGTGAAGGGCGACACCGTCCTTGCCAAACGACGCTACGTGAGAGAGCATCTCGATCACCTCCGCAAAGTGTTGATGTTGGAGCCGCGCGGCCACTACGATATGTACGGAGCCCTGCTGGTCCGAAGTGAGTTAGCAGAGGCTGATCTCGGCGTCTTGTTTATGCACAACGAAGGGTACAGCACCATGTGCGGCCACGCTGTCATTGCTCTCGGGCGCTTTGCGGTGGATTACGGCTTGATTAAAGCGCCCGCTTCACCGGAGACGCAGATAAACATACACTGCCCTTGTGGCTTAGTGAAGGCCTTCACACAGTATTCCAACGGGAGAACCGGAGCTGTCAGATTCCACAGTGTGCCAGCCTTCGCTTTCGCTACAGATGTGAGTGTCTCGGTACCGGGATATGGGTCCATTAATGTAGACATCAGTTATGGCGGAGCTCTTTATGCTTTTGTGAGTGCTGAGAAATTTGGATTAGATGTGAAGAAGTCCAAAACCAGAGATCTGGTGGATGCAGCCACTGCTGTGAGCGATGCTGTCAAATCCCAgGTAAAGCTGTACCATCCAGTCAGCGAGGATCTGGCCTTCCTCTACGGCACAATCCTTACTGACGGCAAAGATGCTTTTTCTGAAGAGCCCACagccaatgtgtgtgtgtttgctgatgCACAGGTGGACCGAAGCCCTACGGGGTCAGGCGTCACTGCTCGTATTGCTCTTCAGTACCATAAAGGCCTGATCGAACTCAACCAGACCAGACGTTTTGAGAGCGGAGCTACAGGATCAGTGTTTACAGGAAAAGCAATAGAGGAGACCACGTGTGGGGACTTCAGGGCTGTGGTAGTGGAGGTCGAAGGTCATGCTCACTACAGCGGCGTGGCCAGCTTCACCCAAGAGACCAATGATCCTCTGAGAGGAGGCTTTCTCCTGCGCTGACCTAACGCTTACAACTGATATTTCTGCTTCTGCTTGCAGACCTGAGCCTCCATTCGTGCCCTGCGCTCCTCCTCTTCTTTGCGTCGGCGCATGTTCTCGTTCTCTTGACGGGCCTCGGAGAAGGACTGCAAGAACTGGTCGAATATCCCAAAGAACTCATCAGGCTGCATCTTAT
>XM_043236628.1
AACAGTGTGGAGTTGTGACGAGTGCTCTATGGAGTTCCCAAAGCTGCCCCCTCACTCGGGCCCTGTGCTCTCAGTAGTGGACATGCACACAGGCGGAGAGCCGCTGCGCATTATCCTGAGCGGCTATCCAGAGGTGAAGGGCGACACCGTCCTTGCCAAACGACGCTACGTGAGAGAGCATCTCGATCACCTCCGCAAAGTGTTGATGTTGGAGCCGCGCGGCCACTACGATATGTACGGAGCCCTGCTGGTCCGAAGTGAGTTAGCAGAGGCTGATCTCGGCGTCTTGTTTATGCACAACGAAGGGTACAGCACCATGTGCGGCCACGCTGTCATTGCTCTCGGGCGCTTTGCGGTGGATTACGGCTTGATTAAAGCGCCCGCTTCACCGGAGACGCAGATAAACATACACTGCCCTTGTGGCTTAGTGAAGGCCTTCACACAGTATTCCAACGGGAGAACCGGAGCTGTCAGATTCCACAGTGTGCCAGCCTTCGCTTTCGCTACAGATGTGAGTGTCTCGGTACCGGGATATGGGTCCATTAATGTAGACATCAGTTATGGCGGAGCTCTTTATGCTTTTGTGAGTGCTGAGAAATTTGGATTAGATGTGAAGAAGTCCAAAACCAGAGATCTGGTGGATGCAGCCACTGCTGTGAGCGATGCTGTCAAATCCCAgGTAAAGCTGTACCATCCAGTCAGCGAGGATCTGGCCTTCCTCTACGGCACAATCCTTACTGACGGCAAAGATGCTTTTTCTGAAGAGCCCACagccaatgtgtgtgtgtttgctgatgCACAGGTGGACCGAAGCCCTACGGGGTCAGGCGTCACTGCTCGTATTGCTCTTCAGTACCATAAAGGCCTGATCGAACTCAACCAGACCAGACGTTTTGAGAGCGGAGCTACAGGATCAGTGTTTACAGGAAAAGCAATAGAGGAGACCACGTGTGGGGACTTCAGGGCTGTGGTAGTGGAGGTCGAAGGTCATGCTCACTACAGCGGCGTGGCCAGCTTCACCCAAGAGACCAATGATCCTCTGAGAGGAGGCTTTCTCCTGCGCTGACCTAACGCTTACAACTGATATTTCTGCTTCTGCTTGCAGACCTGAGCCTCCATTCGTGCCCTGCGCTCCTCCTCTTCTTTGCGTCGGCGCATGTTCTCGTTCTCTTGACGGGCCTCGGAGAAGGACTGCAAGAACTGGTCGAATATCCCAAAGAACTCATCAGGCTGCATCTTAT

Function

symbol description
l3hypdh Predicted to enable trans-L-3-hydroxyproline dehydratase activity.

NR:

description
PREDICTED: trans-3-hydroxy-L-proline dehydratase isoform X1

GO: NA

KEGG:

id description
K18384 L3HYPDH; trans-L-3-hydroxyproline dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236626.1 False 1421 mRNA 0.51 7 17483433 17490295
XM_043236627.1 True 1436 mRNA 0.51 8 17483433 17490295
XM_043236628.1 False 1241 mRNA 0.54 7 17484898 17490295

Neighbor

gene id symbol gene type direction distance location
esr2a esr2,LOC107718402,LOC107701482,LOC107755240,LOC107683963 coding upstream 72581 17397135 ~ 17410852 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239,LOC107601898 coding upstream 134563 17308293 ~ 17348870 (+)
nudt14 nudt14,LOC107755236,LOC107718404,LOC107701483,LOC107683965 coding upstream 189797 17266457 ~ 17293636 (+)
brf1b brf1b,LOC107718407,LOC107683968,LOC107701485,LOC107755207,LOC107560373 coding upstream 306936 17122433 ~ 17176497 (+)
ppp1r13bb LOC107560381,LOC107718410,LOC107755206 coding upstream 400313 17040857 ~ 17083120 (+)
nmu nmu,LOC107684000,LOC107755222,LOC107568121,LOC107701461,LOC107718432 coding downstream 75158 17565453 ~ 17578804 (+)
clocka clock,clocka,LOC107701480 coding downstream 91775 17582070 ~ 17630822 (+)
kdr kdr,LOC107755244,LOC107665394,LOC107683984,LOC107718422 coding downstream 154140 17644435 ~ 17665897 (+)
LOC122343009 zgc:65851,LOC107670379,LOC107668750,LOC107599600,LOC107708255,LOC107755851,LOC107573085 coding downstream 315545 17805840 ~ 17811463 (+)
oxt oxt,LOC107729605,LOC107745630,LOC107597959,LOC107674922,LOC107566857,LOC107670390 coding downstream 411146 17901441 ~ 17902917 (+)
G29200 NA non-coding upstream 97753 17385289 ~ 17385680 (+)
G29192 NA non-coding upstream 188793 17294375 ~ 17294640 (+)
G29181 NA non-coding upstream 262817 17220257 ~ 17220616 (+)
G29178 NA non-coding upstream 263919 17219142 ~ 17219514 (+)
LOC122342667 NA non-coding upstream 364327 17090539 ~ 17119106 (+)
G29272 NA non-coding downstream 63538 17553833 ~ 17554190 (+)
LOC122342426 NA non-coding downstream 176855 17667150 ~ 17669761 (+)
LOC122343158 NA non-coding downstream 219760 17710055 ~ 17711711 (+)
G29305 NA non-coding downstream 247772 17738067 ~ 17739667 (+)
G29306 NA non-coding downstream 255233 17745528 ~ 17746317 (+)
atp5mj NA other upstream 442603 17038419 ~ 17040830 (+)
G28982 NA other upstream 1009052 16473898 ~ 16474381 (+)
G28899 NA other upstream 1497707 15985219 ~ 15985726 (+)
G28891 NA other upstream 1641578 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1828155 15565499 ~ 15655278 (+)
G29526 NA other downstream 810120 18300415 ~ 18301189 (+)
G29545 NA other downstream 946165 18436460 ~ 18461317 (+)
G29642 NA other downstream 1392884 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 1799925 19290220 ~ 19342911 (+)
G29835 NA other downstream 2240967 19731262 ~ 19786128 (+)

Expression


Co-expression Network