brf1b (brf1b,LOC107718407,LOC107683968,LOC107701485,LOC107755207,LOC107560373)


Basic Information

Item Value
gene id brf1b
gene name brf1b,LOC107718407,LOC107683968,LOC107701485,LOC107755207,LOC107560373
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 17122433 ~ 17176497 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236670.1
GGGTAGAAAGTCACAACAGTAATGGTGTTATGagtcaaatgaaatattttaccctaaaaatgactttaatctttttaaacatGAATGCTCAATGAATGCAGTTCAGATCTTTTATTTAACTGGATACTGGATACTGCTTTAAAGTGTTTATAAGTCTTTACTTCCTCTGACCGGTGTGAGTGTCGCTGCCGCTATGAGTCGTCAGTGTAAGAACTGCGGCGGAGCAGACATCGACACGGACCCGGCCCGGGGGAGCGCGGTCTGCACGGCCTGTGGCTCGGTTCTGGAGGATAATATCATCGTGTCCGAGGTTCAGTTTGTGGAAAACAGTGGAGGGGTGTCTTCAGCTGTCGGCCAGTTCGTGTCTGCCGATGGTACATCCAAAGCTCCTGTTTTGGGCAGTGGATTCCACACGAGCCTGGGAAAAGAATCTCGAGCTCAGACGCTGCAAAACGGGAAACGACAGATACACAACCTCGGCAGCCAGCTGCAGCTGAACCAGCACTGCCTAGACACGGCCTTTAATTTCTTCAAGATGGTAGTGAGCAAGCACTTGACACGAGGGCGAAAGATGACACACGTCATAGCCGCCTGCCTCTACCTGGTCTGCAGGACAGAGGGAACGCCACACATGCTCCTGGACTTGAGCGATCTTTTACAGGTTAATGTTTACATTCTGGGAAAGACCTTCCTCCTGTTGGCTAGAGAGCTGTGTATCAACGCTCCGGCCGTCGATCCATGTCTGTACATTCCACGATTCGCCCACATGTTGGAGTTTGGTGAAAAGACTCACGAGGTTTCAATGACTGCTCTCAGACTGCTGCAGAGGATGAAGAGGGACTGGATGCACACGGGACGGCGACCGTCAGGCTTGTGCGGCGCAGCACTGCTCGTAGCGGCTCGTATGCATGAATTCCGTCGTACAGTGAAGGAGGTGATATCTGTCGTCAAGGTGTGCGAAGCCACGCTGAGAAAAAGACTGACAGAGTTTGAGGATACCCCCACCAGTGCCCTGACCATCGATGAGTTCATGCGAGTGGACCTTGAGAAAGAATGTGATCCTCCATCTTTTGTTGCAGGACAGAAAAAACTCAAGATGCAGCAGCTGGAGCAGGAGTTGGCCAAGAAACTTGAGGAATATCAAGGTGAGATCAACTCGTACCGCGATGAGATTGAGACACAGCTGGCGTCAAGCAGCAGAACCAAACTGAGAGGGATTTATGCCTCCTACGCTAGAGAAGATGATGACTGTGTGTCTTTGGCCTCTGGGATGACTGGAGACGAAGACCCAGAGGATGAGGAGATGGAGGCAGCGGCTCAACATCTCAACCAGGAGTTTATCAGTCAGGTGCTCGAACAGGGAGACCAGGGAGGAATGGAGGATCAGGAAGCGGCTAGGGACACAGTACCTCTCTCCAATCAGGCCACGCATGTGCCACTGACAGCGCTCCTCGGCCCTTTGCCCAGTGCAGCCAGTCTTGGTCTAACAGACTCCATTCGGGAGTGCATCACAGAGGAGGATACAACAAACATGGAGGATAAATCAGATAATGGGGAATTGGATCTGAATGGGATTGATGAAGAAGAAATTGAAAAGTACATTTTGAACGAGATAGAGGTGGAGGCCAAGACAGAGCTGTGGATGAAACAGAACGAGGAATATTTGAGAGAACAGAAAGaaaaagagGAGAGAATAGCTAAAGAGAAGGAGCAAGGGACCTATAAAGAGAAGCCAAAAAAGCCATCCAAGAAGCGAGAGCCAATCCTGGCCAGCACTGCGGGAGAGGCCATAGAGAAGATGCTGGAGCAGAAAAAGATCTCCAGTAAGATCAATTATGATGTTTTGCGGGACCTCAACAGCAAGGGCAGCGGGAGCAACGCCACCCAGCAAGCCGAGGATGTGCCTGTCGGTAGCTCCGGGCGCAAAAAGCTGACCCGCCGCAAGAAGCAGCCGAACAAAAGCAATCTTGGCCTCGCAAAACCTGCAAGTCTCATGGGCAAGAGACTCCGCCCCTTAATATCGTCCACACCCAAGAAGAAGAGGACAGCAGCCACACTGTTTAAATACAGATTTGCCATGATGTTGCCACCTGCAGCCCCAGAGCCCCCTCCATTACCCCACCTCCCCGTGTTGGAAAGTGGGCCGGTGGCATATGAGGAACCCgctgaggaggaagaggagaatgaGGAAGAGGCAGAGGAGTCTTGCATTAGCGCCATGGAGCTGATAGGTGGAAACGATTACGGATGTGAAGCTGAAGAAGAGGAGGTATTTTAGACTGCACCCTATCGTCTGTTCCCTGAACTTCTTCTCATCCTCCTATCCACTTCTATTACTCCCTACGGCAAGGAGAGGAGAAGTTAAGGCACATTTGAGACACCTATAATATGCCGCACGTTTACGAAAGGTCATCCTCCCTTACAGTGCATTATATGGCTGGTTAAACTGCAGCATCTGGGAGATGAATGAGATACAATGGGAGTAGGTGGCTGGCAGTTTTAGATTGAAGAGCAAAAccattttagccattttattacattgaaagTTCATCAAACAGAAAGCTCTGAAGTAGTTTCCTGGGTATTCCAGATAATTAGTTTTACAAGTTTTACAGGTACAGGATTTGAATGTCGGCAATTCCTGAAAGGTGAGAATATTGATGTCTGCTTAGCttgctaataatatttaatacattgtgGGACAATGTTATAGAAATTTGTTGCAcgtttacatttgtaaatgcttCAAATACTTCAATTGCAACAATAATTGTACATACACAGTAGGAAGGTGTGAAAATTTCACTATTggtgttttaactttttattttttagctatTTCATGATAtgtctgtttgtatttatttacatgtaacagcattttgttatatttcctaattctaagaaaaagtaaatgttCGGATTATGataaatgttaatgcattgTACAGCAATGTTATGACCCTCGTTTTAACTGTTTTCATTGAAATGTGGATTTCGGAGTACACAATGAAAGcagaatattttaatgtttatgtaaataaattcacatctgtttagaatgttttaatgatga

Function

symbol description
brf1b Predicted to enable RNA polymerase III general transcription initiation factor activity and RNA polymerase III type 3 promoter sequence-specific DNA binding activity. Acts upstream of or within cerebellum development and thrombocyte differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of transcription factor TFIIIB complex and transcription preinitiation complex. Predicted to be active in nucleus. Is expressed in head. Human ortholog(s) of this gene implicated in cerebellofaciodental syndrome. Orthologous to human BRF1 (BRF1 RNA polymerase III transcription initiation factor subunit).

NR:

description
transcription factor IIIB 90 kDa subunit-like

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0017025 TBP-class protein binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K15196 BRF1, GTF3B; transcription factor IIIB 90 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236670.1 True 3076 mRNA 0.47 21 17122433 17176497

Neighbor

gene id symbol gene type direction distance location
ppp1r13bb LOC107560381,LOC107718410,LOC107755206 coding upstream 39313 17040857 ~ 17083120 (+)
rd3l rd3l,LOC107697292,LOC107560380,LOC107743985 coding upstream 85276 17033921 ~ 17037157 (+)
rtn1b rtn1b,LOC107560379,LOC107697289,LOC107701456,LOC107718426,LOC107743986,LOC107589072,LOC108434986,LOC108257846 coding upstream 96095 16999905 ~ 17026338 (+)
six1b six1b,six1,LOC107589069,LOC107563694,LOC107697302,LOC108434988 coding upstream 182746 16937799 ~ 16939687 (+)
six4b six4b,LOC107743978,LOC107589068,LOC107563693,LOC107697301,LOC107701468,LOC107718441 coding upstream 190227 16925017 ~ 16932206 (+)
nudt14 nudt14,LOC107755236,LOC107718404,LOC107701483,LOC107683965 coding downstream 89960 17266457 ~ 17293636 (+)
jag2b jag2,jag2b,LOC107718403,LOC107755239,LOC107601898 coding downstream 131796 17308293 ~ 17348870 (+)
esr2a esr2,LOC107718402,LOC107701482,LOC107755240,LOC107683963 coding downstream 220638 17397135 ~ 17410852 (+)
LOC122342653 l3hypdh,LOC107684001 coding downstream 306936 17483433 ~ 17490295 (+)
nmu nmu,LOC107684000,LOC107755222,LOC107568121,LOC107701461,LOC107718432 coding downstream 388956 17565453 ~ 17578804 (+)
LOC122342667 NA non-coding upstream 3327 17090539 ~ 17119106 (+)
G29089 NA non-coding upstream 36576 17046871 ~ 17085857 (+)
G29086 NA non-coding upstream 84213 17037273 ~ 17038220 (+)
G29078 NA non-coding upstream 181123 16941016 ~ 16941310 (+)
LOC122342883 NA non-coding upstream 211091 16897515 ~ 16911342 (+)
G29178 NA non-coding downstream 42645 17219142 ~ 17219514 (+)
G29181 NA non-coding downstream 43760 17220257 ~ 17220616 (+)
G29192 NA non-coding downstream 117878 17294375 ~ 17294640 (+)
G29200 NA non-coding downstream 208792 17385289 ~ 17385680 (+)
G29272 NA non-coding downstream 377336 17553833 ~ 17554190 (+)
atp5mj NA other upstream 81603 17038419 ~ 17040830 (+)
G28982 NA other upstream 648052 16473898 ~ 16474381 (+)
G28899 NA other upstream 1136707 15985219 ~ 15985726 (+)
G28891 NA other upstream 1280578 15841372 ~ 15841855 (+)
cdkn1d LOC107699204,LOC107719868,LOC107562144,LOC107601015,LOC107758204,LOC107687563 other upstream 1467155 15565499 ~ 15655278 (+)
G29526 NA other downstream 1123918 18300415 ~ 18301189 (+)
G29545 NA other downstream 1259963 18436460 ~ 18461317 (+)
G29642 NA other downstream 1706682 18883179 ~ 18886402 (+)
G29814 LOC107660256 other downstream 2113723 19290220 ~ 19342911 (+)
G29835 NA other downstream 2554765 19731262 ~ 19786128 (+)

Expression


Co-expression Network