LOC122342683


Basic Information

Item Value
gene id LOC122342683
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10717753 ~ 10720201 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236694.1
CAGGAAACAAAGTGCTCCTATAAAAGCTAATCATGCAATGGTATCTCCAAACTTTGTGGCAGCAGCTGTTGTGTGAGCGAGCGCAGGAGAATCGCATTGATTGCTGAATCCACTGAGACAAGAGAAGgaACCAGAAACAATGAAAGTCTGTCTGTGCATCCTGCTATTTACCCACCTGTTCTTTTATACTATAGCTTTAAATTGTGAAGTGATTCCTGGCACCCTGAAGCAGATTGACGCTGGGCTAGGGGTAGTAGGTGGCGTGAACGATGACAACGAGGTCTTCCTGTTCCTTGGGACCAGTTTTGAAAGGATAAGATCATCCCTGAAGCACTTTACCGTCGGACCTTCTGGAGAACTAGGGGCTAATTCATCAAACAATGTTTTCAAGTTTGCGGACGGAAGCTTCAAGCAGATTCCAAACATTCAACTCAAACAAGTAGATGCCGGAGGTGACCAGATCATTGTAGGTGTTTCACCCGTAGATGATGTCTTCTGCTTAAATAAGGATGCTAACAACGTCAAGCTATCCGGCGATGCTCCTTGGGTCCAGCTTGCGGGAAAGCTGCAGTACTACAGCTGTGGCCCGTACAGCTGTTGGGGAGTGAACGCCGCAGGGAACATCTTCATCAGAAGATCTGTCACTGGTGCTTCCTGCGGAGGGTCAGGTGCTTTTGAGGCCGTTGCTGGAGCTCTGTCCATGGTCGAAGTAGCTAGCGATGGAAACGTCTTTGGTGTAGACCCTCAGGGGAATTTATTGCAAAGAACTAGTGTCTCGGTTTCGAATCCCTTTGGATCAAGTTGGGTATTTGTTACAGTCTGTCCCAATGGCCACAAGCACGTGACTTACGATCTGGGGAGGCTGTATGTCATCTGTAGCGACGGATCCATCAGgagatgcatttaaatgtcCAACAAAAGAGCTCCaatatcattataaatgaaatctctttcatttctttgcTTGCTGGactattttatgatttatgatttcacattatttttgtcAGTAAAGTTCAATAAAGTGCTCTGTCAACGTC

Function

GO:

id name namespace
GO:0044459 obsolete plasma membrane part cellular_component
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0098797 plasma membrane protein complex cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236694.1 True 1040 mRNA 0.46 6 10717753 10720201

Neighbor

gene id symbol gene type direction distance location
LOC122342684 NA coding upstream 1146 10714760 ~ 10716607 (+)
cacna1c cacna1c,LOC107590584,LOC107732972 coding upstream 75302 10528045 ~ 10642451 (+)
ccdc146 LOC107694170,LOC107738828,LOC107591091,LOC107732959 coding upstream 254136 10448279 ~ 10463617 (+)
ppp6r2a ppp6r2a,LOC107557302,LOC107699058,LOC107733000,LOC107694165,LOC107738817 coding upstream 319924 10382619 ~ 10397829 (+)
gcc1 LOC107732988,LOC107738815,LOC107590505,LOC107694160,LOC107699059,LOC107557305,LOC107557306 coding upstream 343436 10369339 ~ 10374317 (+)
LOC122342682 NA coding downstream 2124 10722325 ~ 10726265 (+)
nav3 nav3,LOC107755908,LOC107680031 coding downstream 136884 10857085 ~ 10982814 (+)
syt1a syt1a,LOC107560302,LOC107694178,LOC107734425,LOC107755909,LOC107590640,LOC107680026 coding downstream 278728 10998929 ~ 11156744 (+)
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding downstream 604432 11324633 ~ 11326693 (+)
llph llph,LOC107755886,LOC107590743,LOC107694185,LOC107680014 coding downstream 853546 11573747 ~ 11575237 (+)
G27731 NA non-coding upstream 58422 10648692 ~ 10659331 (+)
G27729 NA non-coding upstream 59612 10653704 ~ 10658141 (+)
G27651 NA non-coding upstream 352182 10287478 ~ 10365571 (+)
G27643 NA non-coding upstream 453553 10262869 ~ 10264200 (+)
G27562 NA non-coding upstream 845750 9686499 ~ 9872003 (+)
G27754 NA non-coding downstream 456223 11176424 ~ 11178043 (+)
G27760 NA non-coding downstream 458321 11178522 ~ 11179311 (+)
G27777 NA non-coding downstream 556228 11276429 ~ 11296804 (+)
G27778 NA non-coding downstream 577046 11297247 ~ 11300131 (+)
G27789 NA non-coding downstream 618140 11338341 ~ 11367704 (+)
LOC122342850 LOC107740709 other upstream 8806 10707132 ~ 10708947 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other upstream 15550 10686097 ~ 10702203 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other upstream 42643 10662231 ~ 10675110 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other upstream 210199 10479441 ~ 10507554 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other upstream 349828 10365712 ~ 10367925 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other downstream 611344 11331545 ~ 11334456 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other downstream 665929 11386130 ~ 11416227 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other downstream 969113 11689314 ~ 11691129 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other downstream 1076781 11796982 ~ 11815305 (+)
kin kin,LOC102791470 other downstream 2430535 13150736 ~ 13154358 (+)

Expression


Co-expression Network