LOC122342684


Basic Information

Item Value
gene id LOC122342684
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 10714760 ~ 10716607 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236696.1
ATACAGTATCAGAACCAGGAAATTAAGCGTGGCTATATAAGCTAAGTGTCAAGCAGCAGTGTCTTCAAACACCTGTAGAGTGAGCGCAGGAGAATCACACTGAATCCATAGAAAAGaaacAGGACCTGTCTTGAAGAACGATGAAAGTTTGTCAGTGCCTCCTGCTGCTCTGCCTGCTCCATTATTATCTAGCTTTGGAGTGTGAAGTGATCCCGGGGAacctgaagcagattgatgccGGTGTTGGGGTGGTAGGTGGGGTGAACGATGACAACGAAGTCTTCCTGTTGCTTGGGAATGAATTTAGAGGGATAAACGTAATCATGAAGCACTTTTCTGTCGGACCCGCTGGAGAACTGGCGGTGAATTTATCAAACAGCGTCTTCAAGTTTCAGAGCGGCCAGTTCGCCTCGATTCCAATCACTTTTAAACAGGTGGATGCTGGCGGAGACCAGATTATTGCTGGCGTTACTCCTCTAGATGATATCTTCTGCTTGAATAAGGATACTAACAACGTCGGGCCGTCCAGCAATTTCGCCTGGGTCCAGCTTGCGGGAAAGCTGAAGTACTACAGCTGTGGGCCGTACAGCTGTTGGGGAGTGAACGCCGCAGGGAATATCCTCGTCAGAAGATCTGTATCGGGTGCTTCCTGCGGAGGGGCGAGCGCTTTCGATGTGATTTCTGGAAGTATGTCTATGGTTGAAGTAGCTACCGACGGCAGCGTCTTCGCTATTGACACCCAGGGGTCTTTGTTTCagagaaccGGTGTCTCGGCGTCGAATCCCATCGGCACGGGTTGGTTAGGTTTCCTTGTGTGTCCCAATGGCCACAAGCACGTGACTTACGATCTGGGGAGGCTGTATGTCATCTGTAGCGACGGATCCATCAGGAGATGCGTTTAAATGTCCAACAGAAGAGCTCCAGTTTCATTATAAACCgaatgttgaaaatgaaaatagtttttcctttctttcctttGCACAATTTATTTACTAATAGCAGTTAGATGTATGCCTCATGATTGTCAATATATCAATAAAGAATTGCTACCCTGCA
>XM_043236697.1
CAGGAAATTAAGCGTGGCTATATAAGCTAAGTGTCAAGCAGCAGTGTCTTCAAACACCTGTAGAGTGAGCGCAGGAGAATCACACTGAATCCATAGAAAAGAcatatttgttttcagaaacAGGACCTGTCTTGAAGAACGATGAAAGTTTGTCAGTGCCTCCTGCTGCTCTGCCTGCTCCATTATTATCTAGCTTTGGAGTGTGAAGTGATCCCGGGGAacctgaagcagattgatgccGGTGTTGGGGTGGTAGGTGGGGTGAACGATGACAACGAAGTCTTCCTGTTGCTTGGGAATGAATTTAGAGGGATAAACGTAATCATGAAGCACTTTTCTGTCGGACCCGCTGGAGAACTGGCGGTGAATTTATCAAACAGCGTCTTCAAGTTTCAGAGCGGCCAGTTCGCCTCGATTCCAATCACTTTTAAACAGGTGGATGCTGGCGGAGACCAGATTATTGCTGGCGTTACTCCTCTAGATGATATCTTCTGCTTGAATAAGGATACTAACAACGTCGGGCCGTCCAGCAATTTCGCCTGGGTCCAGCTTGCGGGAAAGCTGAAGTACTACAGCTGTGGGCCGTACAGCTGTTGGGGAGTGAACGCCGCAGGGAATATCCTCGTCAGAAGATCTGTATCGGGTGCTTCCTGCGGAGGGGCGAGCGCTTTCGATGTGATTTCTGGAAGTATGTCTATGGTTGAAGTAGCTACCGACGGCAGCGTCTTCGCTATTGACACCCAGGGGTCTTTGTTTCagagaaccGGTGTCTCGGCGTCGAATCCCATCGGCACGGGTTGGTTAGGTTTCCTTGTGTGTCCCAATGGCCACAAGCACGTGACTTACGATCTGGGGAGGCTGTATGTCATCTGTAGCGACGGATCCATCAGGAGATGCGTTTAAATGTCCAACAGAAGAGCTCCAGTTTCATTATAAACCgaatgttgaaaatgaaaatagtttttcctttctttcctttGCACAATTTATTTACTAATAGCAGTTAGATGTATGCCTCATGATTGTCAATATATCAATAAAGAATTGCTACCCTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236696.1 False 1056 mRNA 0.47 6 10714760 10716607
XM_043236697.1 True 1057 mRNA 0.47 6 10714775 10716607

Neighbor

gene id symbol gene type direction distance location
cacna1c cacna1c,LOC107590584,LOC107732972 coding upstream 72309 10528045 ~ 10642451 (+)
ccdc146 LOC107694170,LOC107738828,LOC107591091,LOC107732959 coding upstream 251143 10448279 ~ 10463617 (+)
ppp6r2a ppp6r2a,LOC107557302,LOC107699058,LOC107733000,LOC107694165,LOC107738817 coding upstream 316931 10382619 ~ 10397829 (+)
gcc1 LOC107732988,LOC107738815,LOC107590505,LOC107694160,LOC107699059,LOC107557305,LOC107557306 coding upstream 340443 10369339 ~ 10374317 (+)
pax4 LOC107695909,LOC107576795 coding upstream 550274 10161147 ~ 10164486 (+)
LOC122342683 NA coding downstream 1146 10717753 ~ 10720201 (+)
LOC122342682 NA coding downstream 5718 10722325 ~ 10726265 (+)
nav3 nav3,LOC107755908,LOC107680031 coding downstream 140478 10857085 ~ 10982814 (+)
syt1a syt1a,LOC107560302,LOC107694178,LOC107734425,LOC107755909,LOC107590640,LOC107680026 coding downstream 282322 10998929 ~ 11156744 (+)
myf6 LOC107755889,LOC107749082,LOC107694156,LOC107680015 coding downstream 608026 11324633 ~ 11326693 (+)
G27731 NA non-coding upstream 55429 10648692 ~ 10659331 (+)
G27729 NA non-coding upstream 56619 10653704 ~ 10658141 (+)
G27651 NA non-coding upstream 349189 10287478 ~ 10365571 (+)
G27643 NA non-coding upstream 450560 10262869 ~ 10264200 (+)
G27562 NA non-coding upstream 842757 9686499 ~ 9872003 (+)
G27754 NA non-coding downstream 459817 11176424 ~ 11178043 (+)
G27760 NA non-coding downstream 461915 11178522 ~ 11179311 (+)
G27777 NA non-coding downstream 559822 11276429 ~ 11296804 (+)
G27778 NA non-coding downstream 580640 11297247 ~ 11300131 (+)
G27789 NA non-coding downstream 621734 11338341 ~ 11367704 (+)
LOC122342850 LOC107740709 other upstream 5813 10707132 ~ 10708947 (+)
zmp:0000000650 LOC107694155,LOC107589077,LOC107732968,LOC107680013,LOC107574990 other upstream 12557 10686097 ~ 10702203 (+)
rassf8b rassf8,rassf8b,LOC107590609,LOC107589039,LOC107738830 other upstream 39650 10662231 ~ 10675110 (+)
lrtm2a lrtm2a,LOC107738823,LOC107694175,LOC107590570,LOC107732983,LOC107589042,LOC107699047 other upstream 207206 10479441 ~ 10507554 (+)
lamtor4 si:dkey-159a18.7,lamtor4,LOC107590499,LOC107557308,LOC107694163,LOC107699063 other upstream 346835 10365712 ~ 10367925 (+)
myf5 LOC107560306,LOC107680018,LOC107749081 other downstream 614938 11331545 ~ 11334456 (+)
acss3 acss3,LOC107694183,LOC107755903,LOC107680029,LOC107749070,LOC107560301,LOC107590709 other downstream 669523 11386130 ~ 11416227 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other downstream 972707 11689314 ~ 11691129 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other downstream 1080375 11796982 ~ 11815305 (+)
kin kin,LOC102791470 other downstream 2434129 13150736 ~ 13154358 (+)

Expression


Co-expression Network