atxn10 (atxn10,LOC107695869,LOC107732963,LOC107725522,LOC107591266)


Basic Information

Item Value
gene id atxn10
gene name atxn10,LOC107695869,LOC107732963,LOC107725522,LOC107591266
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9523067 ~ 9531050 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236698.1
TAAAGGTCTGTGTTTGTGCTCGCGTGTTGATGGCAGCCTCCGGTGACAGCATGCAGAACATAAACAGCGCGCTCTGTCAAATAGCCACAGAAAAACTTACAAACACGCATCTCACAACTTTGCAAACGGTGACCAAAGCTTTAAGGGATGGCCAGTTCAGagCCAGTGTTGACAGGGAGGCTCTTGGAAACCTCTTTGCAGTGTTGTCAAGACTTTCTGTGGATGCTGAGGATTTGATCGAGATGATGGATTCACAGGAAGGAGAAGCATCTCTGTGCCTTAAAATCACAGCAGAGTGTTTGAGAGCTCACAGAAATGCCTGTGTGCAGTGCTTTCAGAACCAGTGCTGGCTGAGAGACCTAGGCTCGATCAAGCTGTCTTTTGAGATTTTGACCAGACTCCTCAAGATTTCATCAGGAGGTTCAGATGACGTTTATGacgCGCTTCGATGTGGGATTCAGTTTCTTGGTAACATTGCTGTTGGAAACCAGCTTTGCAAAGATGACATCTGGGAGCTCGGTTTCCCGCACATCTTCTGGGACCTTTTGGAGCTTGCAGACGAGAAAGCCGTTTCGTACACATGCATGGTGATCCACACTTGTCTGGATGAAGACAAGACAGAGCAGCTAGTTAAAGACACACGGCAGCTTAAATTGTCCCTGAAGATCGTGGACTTGTGCAGGACGCTGCCTGAAGTGGACTGGACGGTCTTTATTGTCACACAACACTTCCTAAAGTCGTCAGAGCTTTTTAGGAAGATGTACGCCGAAATGTCCAACGAGGAAAGGCTCACACTGCTGGAGCTGATATTAGCACAGCTTGGCGTTGTTGAGGAGGAGAGCTCTTTAATGCCTCTGAACGCAGCTCAGTTCCTGGCTTCCTGCTTCACTGATCACTGCAGAGCTGTTCTCGCTCTGAGCTCTGAATCATCAGGTGACCAGGAGGCTATGGTTGTCGTCAGGCTGTTGGACATCCTTTGTGTAATGACCTCTGGCTGCAAGGAGTTTATGGCCCTGCAGGATCACGCTGACCTTTTGAGCGCAACAGTCGGTCTCTTGAAAGAGGTTCACTTACTGGGGAAAAGCAGTAAGAATGTGTTTACTGCGGCACACGATTTCTCCTTGACGAGGCCAGGGGGCGCTGACACCCATCCTGCCCTCAGTTTCAAAGCTCATCTCATTCGACTCATTGGGAACCTATGTCATGGCCACGGTGTTAACCAGGACAAGGTAAGAGAACTGGACGGTATAGCTCTTATTCTGGACAACTGCAGCATTGACAGCAACAACCCCTtcATAAGCCAGTGGGCTGTGTTTGCCATCCGAAACATCCTGGAACGCAACTTGGACAATCAGAAGATGATACAAGGTCTTCGGAGACAAGGTGTGGCAGACGACACCATACTCAGAGAAATGGGCTTCAGAGTGGAAGAAAGGGATGGCGGTCTACTGCTCAGGCCCCTAAAGAAGGACCCGTAGATGTTTAACTAGAGCTGGGAGACTGCTATCCCAGGAAGCCCATCCCCACACTCCTTTACCATGCTATATTACACTCTGGAGATGGCTTAAAACGCCCACAACACACTGGGGTCATTAAATATCCAATCAGTAGTTGGCAGCACAAGGGGGTGGTCTGGGCTTTGTGTTCTCCACACAAGAGGAAATCAATCAGAGGAGCTTATCTGAGAGGACTCATGCTGATGTCTGTGATGCATTTAGTGGTCTTTGATTCCAACCCCCCCAAAGTGGGATTCAAATCCTATGAAACAAGGAGAACCGTGTCTTCCTGGCTTTTCAGCCACTAAAGAGACTCTGGTGACCAACAGGGAGTAGAGGTTAATCCCTAATTCAGTGCATTTTATAGAGACCAGGCCGCCTCTTGATCTGTACACGTAAAGTTCGTCTCTGAACAGCCTTGGGACTCGGATCCTTCTTTTTGAAAGCGGACTTTAGGTTTTGTGCTTTAAGTTGGGTTTGTTTACAAAGCCGTGCGATTTCAACAATTCCCCTATTATTTACACAAACCTCTCGTGTAGCTTGGTAGATTTAGTTTGACAGGGCTGCCTTTCATTTAgttgattataataaaatagcaacGCAATTA

Function

symbol description
atxn10 Predicted to be involved in neuron projection development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytosol. Human ortholog(s) of this gene implicated in spinocerebellar ataxia type 10. Orthologous to human ATXN10 (ataxin 10).

NR:

description
ataxin-10

GO: NA

KEGG:

id description
K19323 ATXN10; ataxin-10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236698.1 True 2103 mRNA 0.48 11 9523067 9531050

Neighbor

gene id symbol gene type direction distance location
pparaa pparaa,LOC107695898,LOC107725614,LOC107732979,LOC107553885 coding downstream 46353 9461383 ~ 9476714 (-)
cdpf1 si:ch211-239e6.4,cdpf1,LOC107695897,LOC107732981,LOC107664868 coding downstream 62011 9458750 ~ 9461056 (-)
cdkn1ba LOC107732982,LOC107725668,LOC107590325,LOC107553888,LOC107664845 coding downstream 64573 9455683 ~ 9458494 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107664862,LOC107695894,LOC107553890,LOC107590313 coding downstream 121614 9395739 ~ 9401453 (-)
LOC122342492 LOC107725531,LOC107695865,LOC107591243,LOC107732966,LOC107553876,LOC105909546 coding downstream 147254 9374183 ~ 9375813 (-)
def6c LOC107695900,LOC107725651,LOC107590351,LOC107664889,LOC107732969 coding upstream 3375 9534425 ~ 9543507 (-)
cbll1 LOC107695901,LOC107725636,LOC107590361,LOC107733012 coding upstream 46244 9577294 ~ 9580814 (-)
mcat mcat,LOC107695903,LOC107591294,LOC107732994,LOC107725637,LOC107553884 coding upstream 52588 9583638 ~ 9586982 (-)
rap1b rap1b,LOC107695907 coding upstream 56946 9587996 ~ 9632618 (-)
prrt4b LOC107695904,LOC107725552,LOC107590384,LOC107664879,LOC107732996 coding upstream 123406 9654456 ~ 9674110 (-)
G27469 NA non-coding downstream 19067 9498716 ~ 9504000 (-)
LOC122343442 NA non-coding downstream 181328 9330007 ~ 9341739 (-)
G27425 NA non-coding downstream 498990 9023877 ~ 9024077 (-)
G27417 NA non-coding downstream 518844 9003923 ~ 9004223 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding downstream 561634 8960446 ~ 8961433 (-)
G27532 NA non-coding upstream 14158 9545208 ~ 9545421 (-)
LOC122342618 NA non-coding upstream 16589 9547639 ~ 9552161 (-)
G27540 LOC107732962,LOC107553866,LOC107725684,LOC107695899 non-coding upstream 34397 9565447 ~ 9568297 (-)
G27549 NA non-coding upstream 66407 9597457 ~ 9654377 (-)
G27581 NA non-coding upstream 166646 9697696 ~ 9744787 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 222888 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 513763 9004260 ~ 9009304 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 581664 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 648469 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 1005484 8513630 ~ 8517583 (-)
zgc:193726 NA other upstream 824661 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 953872 10484922 ~ 10522249 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 993481 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 1883670 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 2122420 11653470 ~ 11683862 (-)

Expression


Co-expression Network