pparaa (pparaa,LOC107695898,LOC107725614,LOC107732979,LOC107553885)


Basic Information

Item Value
gene id pparaa
gene name pparaa,LOC107695898,LOC107725614,LOC107732979,LOC107553885
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9461383 ~ 9476714 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236699.1
CGCTGTCAGAGCGGTTTGACAGCAGCGGTCGCGGTGAATTTTAAATAGGACGTTTGAGGAGTACTACAGCCTCCCTCGCACCACCGAGCTGAGTTTTGGCAGTGTCACAGAGCCCGTGTGCTTTATTCCTGCCTGCATGGCGGCCTGGGATTGGGAGACTAATGAATGATTCAAAGCTTGCCGTGGTCCAGCGCCATGGTAGACATGCCGAGCCTGTACAGTCCTTTGTCCCCACTGGGCGATCCTATTCTGGACAGCCCACTGTGTGGAGAGCTCATTGGTGACATGGAGGTGCTGGAGGACATCTCACAGTCCCTCAGTGACGATACCTTCAACTCCCTCCACGTGCTGGACTACCAGTGCAACAACACAGCAGCAGACAGCTCAGCTAGCTTAGATGTCTTAACACCAGCATCTAGTCCGTCCTCAGAAGTGTTTGGGTCCAGCGCTGTCCAGGACGAGAACTCGTCTGGTTCTCTGGCCCTCGAGTGTCGCGTCTGCGCCGACCGGGCTTCTGGTTTCCACTACGGAGTGCACGCCTGCGAAGGGTGCAAGggGTTCTTCAGGAGAACCATTAGACTCAAACTGGAGTACGACAAGTGCGAACGCAACTGCAAGATCCAGAAAAAGAACCGCAACAAATGTCAATACTGCCGTTTCCGCAAGTGCCTTGCTGTGGGCATGTCCCACAACGCTATCCGTTTTGGACGGATACCCCAATCTGAGAAACAGAGGCTGAAAGCAGAGCAGGACGTCAGTGGGAAAGAGCAGCACGAGTCCCAGAAGCCGGACACAAAGAGTCTGGTCAGGCAGATGCACGAAGCCTACCTCAAACACTTCCACATGAACAAAGCCAAAGCACGCGTGTTTCTCACGGGCAAGACCAGCACTCCGCCCTTCGTCATCCACGACATGGACACCCTCCAGCACGCAGAGAGGAAACTACACACCCAGCTGCTGGGCAACGTGGCGTCCGGAGACGCCTCATCTCTGCAGGAGAGAGAAGTGGAGGCCCGCCTCTTCCTGTTCTGCCAGTACGCCTCGGTGGAGACGGTCACGGAGCTGACGGAGTTCGCCAAGGCCGTGCCCGGCTTCGCCGCCCTGGACCTCAACGACCAGGTGACTCTGCTGAAGTACGGCGTGTACGAGGCGCTCTTCGCCCTGCTGGCCTCCTGCATGAACAAAGACGGGCTGCTGGTGGCTCGCGGCGGAGGCTTCATCACCCGAGAATTTCTGAAGAGCCTGCGCAAGCCCTTCAGCGACATGATGGAGCCGAAATTTCAGTTCGCCATGAGGTTCAACGCCCTAGAGCTCGACGACAGCGACCTGGCTCTGTTCGTGGCCGCCATCATCTGCTGCGGAGACCGTCCGGGACTGAGCGACGTATCGCACATCGAGCGCATCCAGGAGAGCATCATCCACGCCCTGCGGCTCCAGCTGTTGTCCAACCACCCCGACAACGCCTTGCTCTTTCCCAAGCTGCTGCAGAAGCTGGCCGACCTGCGGCAGCTGGTGACGGAGCACGCCGAGCTGGTCCAGGAGATCAACAAGACGGAGGACGCGTCACTCCACCCGCTTCTGCAGGAGATCTACAGGGACATGTACTGACCTCGGAGGGGGAACATCTTCCGTTGGATGGGGCGCTGCCGGGAGGTTATAGGGTGAAGCCAGCGTAATTGTAGGCCCAAAACTATAGCGTCAACCTTTAATAGGGCACAGACCTTTACAAGGTCACTGCCCACAGTCCCGTAGAGAAGTGCAATAAACGCTTTTGTAAATTTGccaaaaagtgaaaatggaTGGCACTGAAAATACATGCCTCGGCTCACCGTAAACTGGCAGCAGACCATTAAAGTGCCATCTTTAGCTACGTGAGCATCCGCTTATAGCGCTAGAGCGTAGCTGGCTTGTATTGTTTTGGACAAACGTAACTTCCGGAGCGGCTGGCGTCGCTCTGCACTTTTCAACTCGAGCACATCGCCGCCTCTGCCAAACAAGCACCAGCAGTTAAGACTCGGGGCCTGGAAATTATATAGTTATGCTGAATGaggggtgtgttttttttttatcgtatGTTTTAATGCTAGAACGAAacgtgtagagagagagagagagagatataaatCAGACTGTTCGTTACCTCATTTCAAACGCTTGTACATTGAGCATCCTTTGTAAAatcttttgtataaaaatattattgtacacTG

Function

symbol description
pparaa Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and nuclear receptor activity. Predicted to be involved in several processes, including negative regulation of cholesterol storage; positive regulation of fatty acid metabolic process; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including digestive system; heart; immature eye; nervous system; and spinal cord neural tube. Human ortholog(s) of this gene implicated in Alzheimer's disease; coronary artery disease; hepatocellular carcinoma; lipid metabolism disorder; and myocardial infarction. Orthologous to human PPARA (peroxisome proliferator activated receptor alpha).

NR:

description
LOW QUALITY PROTEIN: peroxisome proliferator-activated receptor alpha

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08701 NR1D3; nuclear receptor subfamily 1 group D member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236699.1 True 2210 mRNA 0.55 7 9461383 9476714

Neighbor

gene id symbol gene type direction distance location
cdpf1 si:ch211-239e6.4,cdpf1,LOC107695897,LOC107732981,LOC107664868 coding downstream 327 9458750 ~ 9461056 (-)
cdkn1ba LOC107732982,LOC107725668,LOC107590325,LOC107553888,LOC107664845 coding downstream 2889 9455683 ~ 9458494 (-)
rint1 rint1,LOC107725664,LOC107733011,LOC107664862,LOC107695894,LOC107553890,LOC107590313 coding downstream 59930 9395739 ~ 9401453 (-)
LOC122342492 LOC107725531,LOC107695865,LOC107591243,LOC107732966,LOC107553876,LOC105909546 coding downstream 85570 9374183 ~ 9375813 (-)
socs2 socs2,LOC107695891,LOC107590271,LOC107732999,LOC107664864 coding downstream 95584 9359168 ~ 9365799 (-)
atxn10 atxn10,LOC107695869,LOC107732963,LOC107725522,LOC107591266 coding upstream 46353 9523067 ~ 9531050 (-)
def6c LOC107695900,LOC107725651,LOC107590351,LOC107664889,LOC107732969 coding upstream 57711 9534425 ~ 9543507 (-)
cbll1 LOC107695901,LOC107725636,LOC107590361,LOC107733012 coding upstream 100580 9577294 ~ 9580814 (-)
mcat mcat,LOC107695903,LOC107591294,LOC107732994,LOC107725637,LOC107553884 coding upstream 106924 9583638 ~ 9586982 (-)
rap1b rap1b,LOC107695907 coding upstream 111282 9587996 ~ 9632618 (-)
LOC122343442 NA non-coding downstream 119644 9330007 ~ 9341739 (-)
G27425 NA non-coding downstream 437306 9023877 ~ 9024077 (-)
G27417 NA non-coding downstream 457160 9003923 ~ 9004223 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding downstream 499950 8960446 ~ 8961433 (-)
G27279 NA non-coding downstream 573430 8887186 ~ 8887953 (-)
G27469 NA non-coding upstream 22002 9498716 ~ 9504000 (-)
G27532 NA non-coding upstream 68494 9545208 ~ 9545421 (-)
LOC122342618 NA non-coding upstream 70925 9547639 ~ 9552161 (-)
G27540 LOC107732962,LOC107553866,LOC107725684,LOC107695899 non-coding upstream 88733 9565447 ~ 9568297 (-)
G27549 NA non-coding upstream 120743 9597457 ~ 9654377 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 161204 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 452079 9004260 ~ 9009304 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 519980 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 586785 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 943800 8513630 ~ 8517583 (-)
zgc:193726 NA other upstream 878997 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 1008208 10484922 ~ 10522249 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 1047817 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 1938006 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 2176756 11653470 ~ 11683862 (-)

Expression


Co-expression Network