cdkn1ba (LOC107732982,LOC107725668,LOC107590325,LOC107553888,LOC107664845)



Basic Information


Item Value
gene id cdkn1ba
gene name LOC107732982,LOC107725668,LOC107590325,LOC107553888,LOC107664845
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9455683 ~ 9458494 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043236703.1
TACTTGCGATCGCCATATTGGGTGCTCGCCTACTCGAATGACTCGTCTGTTTTTCTTCGGAATTACTACGAGACGGAGTCGCGCGCTGTTTTCATGACTTGTTTTCCACGCGCGTTTGTTATGCGTGCGTCTCGCTCGGCAACAAGGATCGCGCTTAGTTAGACCGCGTCTGGCTCGACCGCCGCTGCGATTCTCGGGGCGAACTTTCACGTGCAAACATGTCAAAAGTGCGCGTCTCCAATGGGAGCCCGACGCTGGAGAGGGTGGACGCGAGGCAGGCGGATCACGCCAGACCGCCGGTCTGCAGGAACCTCTTCGGCTCCGTGGACCGCGAAGAGTTCGCGAGGGACGTCAAGGAGCAAATGCTGGAGATGGAGAAAGCGTCCAAGGAGAAATGGAATTACGACTTCGCCAGAAACGAGCCGCTCGCGCCGGGCGACTACGAGTGGCAGGAGGTGGACGCGAAAGAGGTGCCGGAGTTTTACACCAGACCGCCTCGCGCAAAACGGGATACCTCGAGCGGGACTGTGGATCATAACGGGAACCACGACTATTTGTTGACAACGAGCGCACGGGGGGACTCTGACAACGCGGAGCACGGGAGTCGCTCGGATTGCCGAACGGCGCTGACCACGCCGAGAAAAAGACCGTCGACAGAGGATCAGGATCGTCCTTGCCAAAGTAAAAGAGCCAACGTCCAAGCGACCGAGGCGAACTGCTGTCCGGAGACGAGTTCGCACGCGCCCAGCAAGTCGGATCCCAAAACGTAAACAAGAGACAGATGAAGAAGGCTATTTTCTCCATCAAATACTTCAAGAGCTTTATGAAGTAAACAGGGACAGCGGTTGAAAAATACAAATCGAGCCTTGGAGAGGCTGTATAAGCACTGAATTTTTACACTAAAAAGTTTTGGCACTCGACAGAATATATTTGCCTCAAAAGCAGACAATGTAGCAGTGTGCAATTGGAGTTTGTTCTTTTACTACCTATGTAtatactttcattttatatgtagcacatttaaaatgtaatgttaaggttaaaaaaagacacacacacaatcgtTTATAAGTGGAGTGCGTTTGACTTGAACAATTGCTGTGCAGTTTTCAGAACGTCTCCCCAAAACGCACCCTTTAAAGGAAGCATAGGTGTGGAGGAGAACAGCAGACACCTCTGATTAGGTTTAAGGATTTGGCCTGGCTCAGGATGCTCACGGTCACAAGTACACCTTCGTGTGTGTATCCGTGTTAGCAGCACAATCTTGGGACATTTCTGAAGTTGCACAAATGTCACTGTTTGAAAAGCAACCTTCTGTGATCTGgccacattaaaaaaacaaaaaaaaacattgatatttGCATTAACACCGTTCGTGTTTATTGGTACTAATATATGATTTTACCAGCCAAAGTTATATAGCACGTTGGGCATGTGGTGTTCTTCTCTGAAGGGACTGTGACTCCTAGTGTGGTATTaaggttttcatgttttttttttacagtattattatatcCCCGGGTTATTCCACTAATTTTATTTTcgcttattttaaattatttctttttattattataatttttgcgCCATAAAGATGTAAATTCACACAAACTACAAATCCTACTGAGTACACCTTCAAAAGAAAGTGCAACTGTAGTGACcaattgattttcttttctttctttttttaaattcattgcTGTGTAGcataatgtacatataaatatatatttctttttttttccccttttaacACTGGGCCATAAAAGTAAGAACAATATTAGTCCATGAAGCCACTTCTTTGCCACAATATATTTGGCTTTCGTGTTGAACATGACATGGCACTatgaccaaaaaataaaaataagtaaaaaccGGCTACAAATAAAAGACGTTACACTGCACGTGTGTAAAACATTGAAGTATACCTGTGTGTACTGCTttgtaaagaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaacactgagaaattATACTAACTTATTTATGTCAagctttttgttgtttatgacTATCCAAAGTGGCATTTGTGCATTTTCTGTATGTACTTCTTTTTGtttatagatttgttttttttccctccacaaATTTGTGCAAGGTTGCAAACTGAGCCTATTAAAAATTTGGTGTGGATTGTGTACTGCTTTATAAATGACATGATTAAACCATAATGACATGAACACCTTCA

Function


NR:

description
cyclin-dependent kinase inhibitor 1B-like

GO:

id name namespace
GO:0007050 cell cycle arrest biological_process
GO:0005634 nucleus cellular_component
GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity molecular_function

KEGG:

id description
K06624 CDKN1B, P27, KIP1; cyclin-dependent kinase inhibitor 1B

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043236703.1 True 2210 mRNA 0.42 3 9455683 9458494

Neighbor


gene id symbol gene type direction distance location
rint1 rint1,LOC107725664,LOC107733011,LOC107664862,LOC107695894,LOC107553890,LOC107590313 coding downstream 54230 9395739 ~ 9401453 (-)
LOC122342492 LOC107725531,LOC107695865,LOC107591243,LOC107732966,LOC107553876,LOC105909546 coding downstream 79870 9374183 ~ 9375813 (-)
socs2 socs2,LOC107695891,LOC107590271,LOC107732999,LOC107664864 coding downstream 89884 9359168 ~ 9365799 (-)
cradd LOC107590265,LOC107695889,LOC107732998,LOC107553893,LOC107664843 coding downstream 99839 9344978 ~ 9355844 (-)
plxnc1 plxnc1,LOC107664865,LOC107590996,LOC107744945,LOC107695856,LOC107725519 coding downstream 139440 9301481 ~ 9316243 (-)
cdpf1 si:ch211-239e6.4,cdpf1,LOC107695897,LOC107732981,LOC107664868 coding upstream 256 9458750 ~ 9461056 (-)
pparaa pparaa,LOC107695898,LOC107725614,LOC107732979,LOC107553885 coding upstream 2889 9461383 ~ 9476714 (-)
atxn10 atxn10,LOC107695869,LOC107732963,LOC107725522,LOC107591266 coding upstream 64573 9523067 ~ 9531050 (-)
def6c LOC107695900,LOC107725651,LOC107590351,LOC107664889,LOC107732969 coding upstream 75931 9534425 ~ 9543507 (-)
cbll1 LOC107695901,LOC107725636,LOC107590361,LOC107733012 coding upstream 118800 9577294 ~ 9580814 (-)
LOC122343442 NA non-coding downstream 113944 9330007 ~ 9341739 (-)
G27425 NA non-coding downstream 431606 9023877 ~ 9024077 (-)
G27417 NA non-coding downstream 451460 9003923 ~ 9004223 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding downstream 494250 8960446 ~ 8961433 (-)
G27279 NA non-coding downstream 567730 8887186 ~ 8887953 (-)
G27469 NA non-coding upstream 40222 9498716 ~ 9504000 (-)
G27532 NA non-coding upstream 86714 9545208 ~ 9545421 (-)
LOC122342618 NA non-coding upstream 89145 9547639 ~ 9552161 (-)
G27540 LOC107732962,LOC107553866,LOC107725684,LOC107695899 non-coding upstream 106953 9565447 ~ 9568297 (-)
G27549 NA non-coding upstream 138963 9597457 ~ 9654377 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other downstream 155504 9271972 ~ 9300179 (-)
klhl42 klhl42 other downstream 446379 9004260 ~ 9009304 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 514280 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 581085 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 938100 8513630 ~ 8517583 (-)
zgc:193726 NA other upstream 897217 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 1026428 10484922 ~ 10522249 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 1066037 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 1956226 11414720 ~ 11573766 (-)
kmt2e kmt2e,LOC107590817,LOC107590964,LOC107710662 other upstream 2194976 11653470 ~ 11683862 (-)

Expression



Co-expression Network