fgd6 (fgd6,LOC107755156,LOC107689226,LOC107667720,LOC107748482,LOC107567667,LOC107597032)


Basic Information

Item Value
gene id fgd6
gene name fgd6,LOC107755156,LOC107689226,LOC107667720,LOC107748482,LOC107567667,LOC107597032
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13384588 ~ 13403216 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236707.1
TTTTTATTGAACTCTTTGACTGGACTTCGCCGTTCCAGCTTTACAAAAGCGGtggcacacacaaaaaaaaccccacggCAAGCATGGAACACGCTCCAACTTATTAGAAATACGAAGCCTTCGGGAGATCTTTCGAAGATACCGAGTCGTCTCCCCTTTTAGGACCCGCGATGGCTCCCGCGAGAAGAAAGGCGCTGAATCCGAAGGAACTGTGCTGAATGCGGCTCATTCATGGAGTGAAGTGAGTCGTTCGGGGATCATGAGTACAGGAATGAAGAAACCACCAGTTGCCCCCAAACCCAAGCTGGTTCAGTCACAGAAACCATCACCTCCCCCCATCGCCCCAAAACCAGAGATCCTGCTGCCTTCGCCCTCACCCACTGCGCACAAAAGAGGAAAACCTGCTGTCGCCCCCAAACCATGTTTACCCAAAGCCCCTCAGAAACCCGTCCAGCCAAGACAAAATCCCTGCAAAACCCAACTTCCCCCTGTATCCAAAAACGGGGGTCCCGCTCTACTATCCTCACACCTGTCCCATTACATTATACCACCCAGGACTCAAGGTTATCAACTAGGTAACAGCAAATCGGAGGATTCCAAGGAAGTATGCGGAACAGCCGAGGTGGACATCCCAAAAGAACAGTTGTTTTACAATGACACATTGGAGCGTGCTTCCCTGCCTGAACGGGACCAAATGCATGCTCCCATGGACTCATCCCACGCTTTCACAGAGACACAGGAAGAAGCAAACTCTGACACATTAGAAAAAGACCAGGCAGGTACACAAAATCAAACTTCTGGGCAGATCCCAAGTCACAGTCCTACGGAACCCCTGCAGGAATGGCCTGCAGAGCAGAAACACAGCGGGAACTCAATTTTTAGCTCTTGCACCAGTGACAGTGATGGTGTTCCTGCACCGCCAAGCAAGCCTCTCCCCGTACCCCATCCACGACGCCCCCGGAGGGCATTATATAGACAGAACGTCGTGGAAAGTGCACCTTCGGACACCCAAGCAGATACACCTACGGAGAATCCTGAACACCTTCAGACAGACGCATTACTAGAAAAATCCGAAAACACTTCAGAAAGCTGTTGCACCTACACGGACGCTGCGTCTAATCTAAGTTCCCCTGAAGAGAACTCGGAAAACACGGACACCGACTCGACCAACGCTGACTCTTTGCACAAAGTAGACTCTTTTCACAGTGTACATACCGAAGACGTGCCTTTTGATCTAGACTCCGCCCACTATTCAGTTCCGACAAATGGTGTAACTTTAGCTTCCTTGAACACAGCTGCGGAGGAGGGGTCGCAACCTCCGGCTCCGCCACCTAGACAGAAATCCCTCCCCCAAATGGTCGATTCCTCATACGAGGCCTCAACATCAGTGGACAACTTGCTCTTGCATTGCCACTCAGATCTTCAAGAGGTTACGTGTACAGATGAGGAGGCGCAAAGCGATGATGAAGATGACGGAGCATATGGAGATTTTGCTCGATACCCGATAACTCGGAGTCTTCCTAAACAGATTAAGCTCAGCTGTGGATCACAAGTGGCAGCTTTAACCAAGCCGCCTCTGGACGGGGAGGAGAAGTCACCAAAAGTCATGCCTAAAAAGCCCCAACGAAACAGTCTTCCAGCATCCGTCGCGTTGCGGAAGCAGAACACACCTCCGCTAACGCATACTCCCCCTCCGCTTCCTAACTCTAGTCCTCCCATGTTCCGCGAGCTTCCGGCACCTCCTCAAGAGAAACCTTCTTGGCGAGTCGCTCTTCCTAGCATCCCTCTCTTTGGTAGAAACCAGCCGACTCGCAGTAACAGCCAGCCACAGGCTGGAGGTGTGGGACCTGTTTTTGTCAAACAGAGGGCGAAGTCGTTTTCCTCTGCGGACCTTCAGCGAGTGGACACCGGGTCCGAATCTTCCGAGCCGTTGGCGCGCTCCGATCAAACGCGCCGCAGCTTGCGGAAACTTCTAGAGCTGCGTGTATGTGCGCGGCTGCTTCCGAGGTTGCTTCGCAGTGGGCAGTCCCTGGATTGCACTCGTACTGATGCAGAATACGAGGAGCGTAAAGCCGCACCCTCCAATCAGGTCGCACCTGCGGATGATGAAGAAGCTCAAGGTAACAGTGAGGCTGACTGCGGGGTGGAATACGAGAACGTCCCATTATACGAGGAGATTCCAGAGTACATGAACTTGCCCTGGGTTTATTCCAACCAGGATGTGGACACGGGCGTGTATGAAGTTCAGGAACCATGTGAGGTGAACAGATGTTCTGTGAGTGGTGATCTGTCGGAGGATGGATTGAGCTCGAACGAGGAAGATGGGAACAGTTCTGACTCCAGCAAAGAAGACATGAGCCATTCAAAAGACAAAGAGGAGGTCGAGAGGGCGAAGAGAAACAAGGTGGTCCACATCGCCATGGAGATCATGAGCTCAGAGAAAGTGTTCGTGGACGTTCTGAAGTTACTTCACATCGATTTCCGGGATGCGGTCGCCAAAGCTACCCGTGCGAGCGGGAAACCGCTGGTGGAGGAGAAAGTGTTGAATCAGATCTTGTACTATCTGCCCCAACTCTACGAACTCAATAAAGACCTGCTGAAAGAGCTGGAGGAGAGAGTGGCCCACTGGTCTGATCATCAGAGATTGGCTGATATCTTCGTTCAGAAAGGTCCGTATCTGAAGATGTACTCTACCTACATACGAGAGTTTGACCGTAATGTGGCTCTGCTGGATGAACAGTGTCGCAAAAATCCTCCTTTTGCTAACGTTGTGCGTCAGTTTGAGATGAGTCCTCGCTGCGCTAGTCTTGCTTTAAAGCATTACCTGCTGAAACCGGTGCAGCGGATACCTCAATACCAGCTCCTGCTCACAGATTATTTGAAGAACCTTCCTGAGGATTCATCCGACTATAAAGACACTCAAACTGCTCTCAGCGTGGTGAAAGAAGTGGCGAACCACGCAAACGACATTATGAAACAAGGGGATAACTTTCAGAAGCTGATGCAGGTTCAGTACAGTCTGAACGGTCACCATGAAATTGTCCAGCCTGGCAGGGTTTTCTTAAAAGAGGGCACTCTGATGAAACTTTCCAGGAAGGTTATGCAGCCCAGAATGTTCTTCCTGTTTAATGATATTCTGCTGTACACAACCCCCGTTCAGTCCGGCCAGTATAAAGTCAACAGCATGCTATCTCTGGCTGGCATGAAGGTGAGCAAACCAAGTCAGGAGGCCTATCAGAATGAGTTAAACATTGAGAGTGTGGAACGCTCTTTCATACTGTCTGCCAaTTCAGCCACAGAAAGAGACGAATGGCTGGAAGCCATCGCTAAAGCAATAGACGACTACACCAGAAAgaagatttctttcttttccagtCGAAGCCAAGAGttggagggAATCTCGGATGACGGCCTGCCGCTGGGCTCTAAAGCTCCGATCTGGATCCCGGATTTGAGAACGACCATGTGTATGATCTGCACGTGTGAGTTCACGCTCACCTGGAGGCGCCACCACTGCCGTGCCTGCGGAAAGGTGGTGTGTCAGGCATGCTCGTCCAATAAATACTACCTGGAATACCTGAAGAATCAGCTGGCAAGAGTGTGCGACCACTGCTACATCAAACTGCAGGACAAGGGTGACCAATCCAATGTGACCGTTTCCCCCGGTGGGCGGAGTTCGACCTTTGCTTTTTCCAGAAAGCAGAAGAAGATACCTTCCGCGCTCAAAGAGGTGTCCGCCAACACGGAGAATTCTTCCATGAGCGGATATCTGCAAAGATCCAAAGGCCACAAGAAACCGTGGAAGAGGCTGTGGTTCGTCATCAAGAACAAAGTCCTCTACACGTACGCCGCTAGTGAAGATGTTGCGGCGTTGGAGAGCCAACCCCTGCTGGGCTTCTTCCTCCGAGAAGAGAAGACGGGACCGGCtcaaaaaatgcagtttaaactGTATCATAAAAACACGCTCTACTACATCTTCAGAGCGGAGGACGTCCCCACCGCTCAGAGgtggATCGAAGCGTTTCAAGAGGCCATGATCCTTTGACTGGCCTGGATCGGATTCGGATGGAATGAATAAATGTCGCTTCTTCTTTGGGTCTCTGCGCTGCGTGCGTGGGCAGCCAGTTTAATGAGGCATAAATCAAAACCCAGTTGGAAGCAAAGGACGCTGGTAAATGTAGTTTACGCATTAATCTATTTTAAGCAGCCTAATGAAGGTAAATCGATTCAGCCTGCCTCCGTCGCGAGGCGTTAATCCATCGTGTCGTTCTCAATGTCATTTTTAGGAAACACTGCCTCTCTGTGCCAGTTCCTTTTCGGTGCTTAATATTACCACGAATCCCGCCCACAAAGCGTTCggggtcaaaaaaaaaaacgtgaccGGTCACGAGCTCGATTTCAGCGACTCCTGACCATTAGGTTTGTCTATGAATCATATCTGAAGCTGAACGAATCCTGCCCGCTTTTCTGAAACCGTTTACGACGGAACCCGAGGCGGTTTGAATCCAGTCGCTTGTCGCCCGAAGAGGGTTTAAAAAGGTTCGGTCAGGGGGGTGTGATTCACAGTCAAGTCTGAATGCGCACGAGGAAGTGTGACAAAGGAATGTCTGATGCCAGGTgcggtgcattgtgggagaTTTCGAATTCAACTGTGAAAGCTGGGAAAAGAGGGCTTAGAACACGCGTGGGCCTTAATCACAAAGCACAGAGCgacttttatgtaaaaattgtaCATGAAACCAGCGTTTTTGGACATTGATGgtaaacgtttttattttatattcaaggCGTTGAACGCGacggtttatttttttattgagaaaGATCGACAACCGTTTACCTAAATTTGACAAATcgtgtatttttatgtaaaaaaaaaacaaatacataaaaatatgtcgATTTTTACAAATAGTTCGTGCGTGGAATACGAGCATTTaggtaatatttttttggatggcattacatgacatttatttttgacaaacaCTTCATGCGTTATATGCGACAATTTTGTAGATGAATGGTTTTATGAacaatttatacatatttattctgcttgtattccctgaaAAAAGGCCCTTTTATTTGGTTTTCAGACAGTTACCGTTacgaaaatgttttaataatcttaaaccctttttttttttttattatcttttgtaCAAAGTAGGTGTTTTGactgttgttttaaaccttATACTGGACAGAACTGGAAGTgtacatattttgtaaatggtAATATAATGCAGGCGTATTTAAAATAGTTCGGGATGTTTAATGGCCTCAATGAATTATGGGTAGTAAAGACACAGTGCCAGGCTGGCTAACTCAGCACTGTTCTAACTTACTATATTAGACCTTTATAGCACACCGGCTGTGAATAGAAAGAAAAACTAGCGCTCTTATCAGGGAAAGATGTAACACACATTGAATACTCTAATGCACCTTGTTCAGGACCACCTCTCTTAACACTTAGACAATGGGTATGACCTGATTATGTTCTCTACAGTTTTCACTAAGGTCCTTGTCAGTTCCAGCCACAGAAAGCCACTGATCTTTCACTGTTTGAAGTGTaacaagattttatttgtcttgCGGCGATGTTCGATATCGATCACGTGTGttgaatgtttgtttacattttgtaagATTGTTTTGCATTTCGGGAAAAAATTTGATACACCACTGTTACgtcttttgggttttttttttttttgtgtgtgtgtgtgtgattcactTTTAAGAAAAGTATGATTACTATTCCTGATGCTTCTTGTCAGATCGGCACTAGTTCCCGAAGGAAATCGTTTTCGCCCTGAAGTAATGTGTTAATATCTTGAGGATTTCAAGGGAGTAGGCTGCGCCCCGACATAAATGTAAAgtgcaaataatttttaataaataacgtAATAAGAAAA

Function

symbol description
fgd6 Predicted to enable guanyl-nucleotide exchange factor activity and metal ion binding activity. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm. Orthologous to human FGD6 (FYVE, RhoGEF and PH domain containing 6).

NR:

description
PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6-like

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K05724 FGD5_6; FYVE, RhoGEF and PH domain containing 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236707.1 True 5921 mRNA 0.47 23 13384588 13403216

Neighbor

gene id symbol gene type direction distance location
nr2c1 nr2c1,LOC107689225,LOC107755159 coding downstream 142 13376174 ~ 13384446 (-)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding downstream 9245 13373631 ~ 13375343 (-)
rbm17 rbm17,LOC107755150,LOC107748463,LOC107663450 coding downstream 83259 13281183 ~ 13301329 (-)
pfkfb3 pfkfb3,LOC107555830,LOC107748462,LOC107663448 coding downstream 109114 13268075 ~ 13275474 (-)
itih2 itih2,LOC107555817,LOC107666937,LOC107748478 coding downstream 220465 13152421 ~ 13164123 (-)
usp44 usp44,LOC107755158,LOC107597009,LOC107667716,LOC107748469,LOC107567668,LOC107689228 coding upstream 30093 13433309 ~ 13440103 (-)
si:ch211-244b2.3 NA coding upstream 57827 13461043 ~ 13465673 (-)
si:ch211-244b2.4 NA coding upstream 62812 13466028 ~ 13470349 (-)
st8sia1 st8sia1,LOC107748471,LOC107755164,LOC107567669 coding upstream 81570 13484786 ~ 13494427 (-)
b4galnt3a b4galnt3a,LOC107689248,LOC107689733,LOC107748486,LOC107584744 coding upstream 99720 13502936 ~ 13513404 (-)
LOC122342564 NA non-coding downstream 40331 13343726 ~ 13344257 (-)
G28377 NA non-coding downstream 64840 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 132554 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 139200 13242506 ~ 13245388 (-)
G28350 NA non-coding downstream 155269 13229094 ~ 13229319 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding upstream 207000 13610216 ~ 13612771 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 417480 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 463561 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 466206 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 476815 13880031 ~ 13880847 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other downstream 22650 13316932 ~ 13361938 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 197698 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 895407 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1368821 12014631 ~ 12015767 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other downstream 1387949 11841965 ~ 11996639 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other upstream 8408 13411624 ~ 13432703 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 289255 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 412358 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 572141 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 752276 14155492 ~ 14176742 (-)

Expression


Co-expression Network