usp44 (usp44,LOC107755158,LOC107597009,LOC107667716,LOC107748469,LOC107567668,LOC107689228)


Basic Information

Item Value
gene id usp44
gene name usp44,LOC107755158,LOC107597009,LOC107667716,LOC107748469,LOC107567668,LOC107689228
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13433309 ~ 13440103 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236710.1
ggGGTCCTCCGGACTCATCGGCGCCTCGCGCGCGTCCTCTCGCGCGTGACGTCACGCAGGGACACGCTCCACGCGACAAGTGTAGACAAGATGGCGCTCGCTGTTGTGCCACAGGAGTAGCCAGTGCTTgacgaaaaaaaaatcagATTAACCATCATGCCTTGGGAGGAGCTGGTTTCACTGCTGGCTGCCGTCACCATGGCGATGTGAAGAGGGCAGTGACTAACTGTGATGGACAGGTGTAAGCACGTGGGTCGCTTAAGGCTCGCGCAAGACCACTCGATCCTGAACCCGCAGAAATGGCACTGTGTGGACTGCAACACCACAGAGTCGGTGTGGGCATGTCTCAGCTGTTCACATGTAGCGTGCGGACGCTACATAGAAGAACATGCGCTTCAGCACTTTAAGGAGCAACACCACCCTTTGGCCCTGGAGGTGAACGAATTGTATGTATACTGCTACTTATGTGATGACTACGTGCTGAACGATAACGCGACCGGTGACTTGAAGCTGCTGCGTAGCACGTTAAGCGCAATTAAGAGCCAGTGCTATGAAGTCACCACGCGCAGTGGCCGCACCTTGCGCTCATCCTCGGCCGCAGGAGACCAGCTGTCGACCAGCACGCAGGAGCTGCAGTTGCGCGACGAAGACCGCATGTTCACTGCACTGTGGCACCGCCGCCGCGCCCTGATCGGCCGCGTGTTCCGCTTGTGGTTTGCACAAACAGAACGAGGGAAGAAGCAATTGGAGGAGGAGCGGCaacaggaggaagaggaggagaggaagcgGGAGGCACGGGAGAGAAGGCGGCAACTCAAACGGCAGCTCAAGGAGGAACTGGAAAGCGCACCTCCGAGGAAGAGCCATCGCATTCGGCGGCAGAGCCTCAAGGCAGCTTCTACAGATGCCACGGCAGTTTCAACCAAAAGCACCAAATCTGTGAGGCGCAGGTCTGCTCCTGCTCGCGTCTCCACACCTACTCCACGAACTCCTAGAGTGAGAACGCCTCAGCAGAGGCCCTGTTCACAAGCCAAGGCCAAACGGTCTCGGGCCCCACCTCCTAAAACCGGTGATTCGCCTATAAAACGGCGGCCTACTGTAACTCCAGGGGTAACTGGTTTGCGCAACCTTGGCAATACTTGCTACATGAACTCGATATTGCAGGTTCTGAGTCACTTGCATGTATTCCGGGAGTGTTTTTTGAGGCTGGATCTGAACCAAGCACTGGAGCTGCTAGCTTCTGCGGTCAGCCACAAGTTGGGACTCTCTAGTCAGCGCATGCCCCAGCAAAAATACTCTAACCAGGGGTCAGGGCTCAGCGGAGGGGCCTCTCGTTCGCGCAACATGGAGCTCATACAACCGAAGGAGCCCAGCTCGAAACACATCTCGCTTTGTCACGAGTTACACACACTGTTCCAGGTGATGTGGTCGGGCAAGTGGGCTTTGGTGTCTCCGTTTGCGATGTTGCACTCCGTGTGGCAGCTGATTCCGGCGTTTCGGGGTTACGCACAACAGGACGCGCAGGAATTTCTTTGCGAACTCTTAGATAAAGTACAGCATGAGCTGGAACGGACCAGAACGCTCACCCCTGCCACTGTTCCGGCCAATCAGAGACGGCTTATCAAACAGGTCCTCAGCGTGGTCAACACCATCTTTCACGGCCAGCTCCTCAGCCAGgtgaGGTGTTTAGCATGCGATCATCGCTCAAACACAATAGAGCCCTTCTGGGATCTTTCTTTGGAATTCCCGGAACGTTACCACAGCAACAGTAAGGATGCTGCACAGGTTCCGTGTGGGTTGACGGAGATGCTGGCAAAGTTTACAGAAACCGAGGCTTTGGAGGGAGCAATCTATGCTTGCGACCACTGCAACAACAAACGACGGCGATTCTGTTCAAAGCAGGTGGTCTTGACTGAAGCTCAGAAACAGCTGATGGTTCACAAACTGCCTCATGTTCTCAGGCTGCACCTCAAACGCTTCAGgtggTCTGGGCGAAACCACAGGGAGAAGATTGGCGTTCACGTTCAGTTTGAGCAGGAGCTGAACATGGAACCCTACTGCTGCAAAGACTCCAGTAACTTACCCCACCCTCAACACTTCCTCTACCAACTCTCTGCTGTCGTCATGCATCACGGGAAGGGATTTGGTTCTGGCCACTACACTGCCTTTTGTTATAATACAGAAGGAGGCTTTTGGGTGCACTGTAACGACTCCAAACTGAGCGTGTGTGCCGTGGAGGAAGTGTGTAAGGCCCAGGCCTACATTCTCTTCTACACACAGAGAAACTCTCAGGACAAAAGCAAAGccagtgacctctgacccctccCGAGTACCCCCCCACGAACCACAGAGACTGTTTGTTTTGTACATTCTGTTGATATAGTTTTAAGACGGTTAGCTCTTTTTTAGCAAACGCGGAGAGCATGTTTTTGTCACGCACACTTATGCCTTACAGTTTTACAACTGACAGATTTCGGTAGGAGGCATTCTTGCAGTCATTGTAgcagtttgctttttttttttgcgtaaaCGAGCCGCTCTCATCGCTGTCTGTGATCGTTGTCCACAAACCAAAGTCGAGATGTGAATGTGTACCGAGCCCGAAATGTGTGTAGCGTCGGtatgaaagaaacatttttttttcttcttctcttcatATCGCAAGTGTTTAAATATCTTGAACCATATTTTAAGAAGTGCCCTGCCAAGTCGAATCGGTTTCAAGAGACTTTTAAACAAGACTCGATTCAGGAATTTTTCTCAGAATGTAGTTTTATATACCTGGTATTTGGGtagagatttcttttttttcccattttacaGGAAAATGTTAAAGACTTTTTCACCAGCAAAAGACAATGTGTGCCGTTAAATTCTCCCCTGTCCGTGTGTGGCGTTAAGGACTGTTCTCTATAGTTCGCGCGGTTTTTTGGTTGTTTGcgcaactcacacacacacacacacttgctcaaATATCTTACGGTGTTTTCCGCATCTTGTTTGTTGTTCAAACCCATTTTCCTCTGCTCTCGGGCAAGTATAGATGTAAAACTATGCAAATTGTTACCTCAATTCATAGAGAAAAATTTACCTCAATAAAAAGgagaatatttttgcatttttctaa

Function

symbol description
usp44 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human USP44 (ubiquitin specific peptidase 44).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 44

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0016579 protein deubiquitination biological_process
GO:0051322 anaphase biological_process
GO:0090231 regulation of spindle checkpoint biological_process
GO:0005634 nucleus cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11834 USP44_49; ubiquitin carboxyl-terminal hydrolase 44/49

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236710.1 True 3127 mRNA 0.51 7 13433309 13440103

Neighbor

gene id symbol gene type direction distance location
fgd6 fgd6,LOC107755156,LOC107689226,LOC107667720,LOC107748482,LOC107567667,LOC107597032 coding downstream 30093 13384588 ~ 13403216 (-)
nr2c1 nr2c1,LOC107689225,LOC107755159 coding downstream 48863 13376174 ~ 13384446 (-)
ndufa12 ndufa12,LOC107667714,LOC107755161 coding downstream 57966 13373631 ~ 13375343 (-)
rbm17 rbm17,LOC107755150,LOC107748463,LOC107663450 coding downstream 131980 13281183 ~ 13301329 (-)
pfkfb3 pfkfb3,LOC107555830,LOC107748462,LOC107663448 coding downstream 157835 13268075 ~ 13275474 (-)
si:ch211-244b2.3 NA coding upstream 20940 13461043 ~ 13465673 (-)
si:ch211-244b2.4 NA coding upstream 25925 13466028 ~ 13470349 (-)
st8sia1 st8sia1,LOC107748471,LOC107755164,LOC107567669 coding upstream 44683 13484786 ~ 13494427 (-)
b4galnt3a b4galnt3a,LOC107689248,LOC107689733,LOC107748486,LOC107584744 coding upstream 62833 13502936 ~ 13513404 (-)
slc6a1l LOC107597007,LOC107584717,LOC107689715,LOC107748475,LOC107689236,LOC108427058,LOC105916091 coding upstream 195510 13635613 ~ 13648049 (-)
LOC122342564 NA non-coding downstream 89052 13343726 ~ 13344257 (-)
G28377 NA non-coding downstream 113561 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 181275 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 187921 13242506 ~ 13245388 (-)
G28350 NA non-coding downstream 203990 13229094 ~ 13229319 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding upstream 170113 13610216 ~ 13612771 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 380593 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 426674 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 429319 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 439928 13880031 ~ 13880847 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other downstream 606 13411624 ~ 13432703 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other downstream 71371 13316932 ~ 13361938 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 246419 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 944128 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1417542 12014631 ~ 12015767 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 252368 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 375471 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 535254 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 715389 14155492 ~ 14176742 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other upstream 1247770 14687873 ~ 14704622 (-)

Expression


Co-expression Network