nr2c1 (nr2c1,LOC107689225,LOC107755159)


Basic Information

Item Value
gene id nr2c1
gene name nr2c1,LOC107689225,LOC107755159
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13376174 ~ 13384446 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236711.1
CAAATCAATGGTTAATTTTGTGGTTATGGTTTAAGTATAATaacttgtttttgctttatttgtagTAAATCCATGCATTATTATCCTATGGGTctgatttatgtaaatattaaaaaaaagtgcattactCAATTCACATTCCTATCAATTGTATGCAGTTAGATTAAATTGTATTGGTTCCAATGACTGGAAATGAAGTCGCTGATGGCAAACGGCATTATCCATCACCACCAGACATGTTGGTAGCCTGTACTTGTAAGAGTTCTTGCCAAACGCGTGTCCAGTTCTTCTTTATGGTTTCTGGAAGCGCTGTAAAACGTTAGCGTCTCTAGTTAAACGTCGCGAACGCACCGCCGCTCGACCTTCACTAAAATCAACGCAGTCTCGCCAGCGCCGGTTTGCGCATGCGTAGACGCGCGGGTCTGCTTCGAGCGGGTCGCGAACTCTGACCTCCTGTAGCTGCAGCGAGCCGTCAGTTTACAGATAATTTATCAAAACACCACAGTTGTTGGATAATTCCTCGCGCGTTCAGGGGAGCGTGTGGCTGATGGGGCGTTGCTGAGCCTCGGTTCGGACAGAACGCCATCATGGAAGGAGAAAGTCCCAGAATTCAGCTGGTTTCTGCAGATGGAGGCCTGCAGATCGTGACGGAGCAGCAGCTGGCTCAGAAGGTGCAGATAGTCACAGCCATTGATCAGGTTGGAGCCGGCAAGCAGCAGTTTATATTAGCTAACCTGGATTACCCCAACCAGGAGAAACTGTTCATCAAACAAGAGAACTCGCCAGCCAAGGTCATCCTAACATCTGCTGATGGGTCTGCGGTCAATCAGCTGCTCTTCGCGTCGCCTGAGCTGACAGGACAACAGATCCAGTTTGTGACGGAAGGCTCGGAGCAGGGCGCTACGAAGCCTCCAGTGGAGTATTGTGTAGTTTGCGGAGACAAGGCCTCAGGTCGTCACTACGGAGCAGTGAGCTGTGAGGGCTGTAAGGGTTTCTTCAAGCGCAGCATCAGGAAGAATCTGGTGTACACGTGCCGGGGGTCCGGAGAATGCGTCATCAACAAACACCATCGAAACCGGTGTCAGTACTGCAGACTGCAGCGCTGCATGGCCCTCGGCATGAAACAAGACTCTGTTCAGTGCGAGAGGAAGCCGGTGGAGGTGTCCAGAGAGAAGCCGGCGAACTGCGCGCCCTCCATCGAAAAGATCTACATCCGTAAAAACCTCTGCAGCCCTCTCGCCGCCATGCCAACGTTTGTCAGCGAAAAAGAGACTGCCAGGTCCACCAGTTTACTGGACTCCAACATGCTCTTGAACATCCAGCAGTCTCTTTCCAAACTTGACAACACCATTTTAATCCCTTCTTCACCAGATCAgACCGATTCTAGTCAAGGAGACCTCGGTACCTTGGCCAACGTGGTCACATCACTCGGTCACCTCAGCAAAAGTCGCGAGATGATGGGCAGCGGTACGGACCTGTCGGGGATAGAGACCATGAGTAACGATGACAGCGTTATGACGGACGTTCAAAGAGATGAGTCGAACGACGTCACGCGGGCTTTTGACACGCTCAAGTGTCTTCAGTCGGAGGAGGGTTGTGGAGAAGAGGTGGCTGAAGGGGCAGTCAGGATGGACGAACAGAACACCGCCCTCCTGGAACTCGAGGGCCCGCTGCTCTCAGACATGCATGTGCCCTTTAAGCTGATGATGCCGCTGCCCATGCCAGACTTCCTGAATCTGAATTACATCTGCGAATCAGCTTCTCGTCTGCTTTTCCTCTCAATGCACTGGGCACGCTCTATTCCAGCTTTCCAGGCTCTTGGCTCGGAGAACAGCATCACGCTGATGAAGGCCTGCTGGAATGAATTGTTTGCTTTAGGTCTGGCTCAGTGTTCACACATTATGAATGTAGAAACCATCCTCACAGCCATAATTAACCACTTACAGACCAGCCTGGATGAAGAAAAGCTGTCGCCGGAGCGCGTGAAGCTAGTCATGGAGCATATCTGGCGCATGCAGGAATTTTGTAACAGCATGAGCCGCATGAGTCCCGACGCGTATGAATACGCTTACCTCAAAGCCGTGGTTCTCTTCAGCCCAGATCACTCCGGAGTCGACGGCGCCCTTCAGATCGAACGCTTTCAGGAGAAAGCTTACATGGAACTCCAGGACTACGTGAGCAAAGTGTATCCAGAGGACACGTATCGTCTTTCAAAACTGTTAGTTCGTCTGCCTGCCCTGCGGCTCATGAGCGCGGCGGTGACCGAAGAGCTCTTTTTCGCCGGTCTAATCGGGAACGTTCAGATCGACAGCATCATTCCCTACATCCTCAAAATGGAGTCTACCGACTACAACAGCCAGCCAATCAGCACTGCCGAGTGACAGGAACCCCGCCCCCACAGCCACACCCAGCGGCTTTTTTCGCTCGCCCAGGCCCTCTGAGCCCCAAACAGATATAATCGAGTCGATTTTGAATGAGGAAATCATTTTGTTCTGactttgctttttcatttggTCAGTGGTTGTGTCTATGGGTTACGTAGTTGCGGTCGGATCGTTTGACTTTTATTGTACTAGTGTACTTATTACTAGAAAAAGTGTCTATAAAGATACAGGAAGTGCAAGGAATCTGTTCTTAAGAACGTGTTCCAAAGAGAACTTTGCCCCCAGCCCCAAGCACTGACTTTCTCTGTATGTATATGAATGATGTATATAGGAATAATAAATGTCGAATCAAGGGGGAAAATGTCTGTATTTTGGTATTTGTTGGAGGCCGTTCCTTTTTTTACGAAcacattaaatgtgattatacAGGGTCCCCACAA

Function

symbol description
nr2c1 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Orthologous to human NR2C1 (nuclear receptor subfamily 2 group C member 1).

NR:

description
PREDICTED: nuclear receptor subfamily 2 group C member 1 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K08543 NR2C1, TR2; testicular receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236711.1 True 2824 mRNA 0.50 14 13376174 13384446

Neighbor

gene id symbol gene type direction distance location
ndufa12 ndufa12,LOC107667714,LOC107755161 coding downstream 831 13373631 ~ 13375343 (-)
rbm17 rbm17,LOC107755150,LOC107748463,LOC107663450 coding downstream 74845 13281183 ~ 13301329 (-)
pfkfb3 pfkfb3,LOC107555830,LOC107748462,LOC107663448 coding downstream 100700 13268075 ~ 13275474 (-)
itih2 itih2,LOC107555817,LOC107666937,LOC107748478 coding downstream 212051 13152421 ~ 13164123 (-)
atp5f1c atp5c1,LOC107728502,LOC107748457,LOC107555824 coding downstream 225468 13146654 ~ 13150706 (-)
fgd6 fgd6,LOC107755156,LOC107689226,LOC107667720,LOC107748482,LOC107567667,LOC107597032 coding upstream 142 13384588 ~ 13403216 (-)
usp44 usp44,LOC107755158,LOC107597009,LOC107667716,LOC107748469,LOC107567668,LOC107689228 coding upstream 48863 13433309 ~ 13440103 (-)
si:ch211-244b2.3 NA coding upstream 76597 13461043 ~ 13465673 (-)
si:ch211-244b2.4 NA coding upstream 81582 13466028 ~ 13470349 (-)
st8sia1 st8sia1,LOC107748471,LOC107755164,LOC107567669 coding upstream 100340 13484786 ~ 13494427 (-)
LOC122342564 NA non-coding downstream 31917 13343726 ~ 13344257 (-)
G28377 NA non-coding downstream 56426 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 124140 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 130786 13242506 ~ 13245388 (-)
G28350 NA non-coding downstream 146855 13229094 ~ 13229319 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding upstream 225770 13610216 ~ 13612771 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 436250 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 482331 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 484976 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 495585 13880031 ~ 13880847 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other downstream 14236 13316932 ~ 13361938 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 189284 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 886993 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1360407 12014631 ~ 12015767 (-)
magi2a magi2a,LOC107680009,LOC107755877,LOC107591172,LOC107694149,LOC107590979 other downstream 1379535 11841965 ~ 11996639 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other upstream 27178 13411624 ~ 13432703 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 308025 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 431128 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 590911 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 771046 14155492 ~ 14176742 (-)

Expression


Co-expression Network