pkma (pkma,LOC107712845,LOC107665073,LOC107595343,LOC107668482)


Basic Information

Item Value
gene id pkma
gene name pkma,LOC107712845,LOC107665073,LOC107595343,LOC107668482
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 28368455 ~ 28382557 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236726.1
CGTGTTCGGGGGCTAATGTGGGCCTGGAGTCTCATTAGAGTCCTGCTCGTGCAGGACGGCAAGCGTGACTTGCGTGTTTTATCCTCTTCGAAGGGAAGAGGATTTAGCGCTCTGTGTCCTCGGCGGCACGATGCGTGCTGCTTCATTCTGGCCGGCGCCGCGATCGGGGAGGGAAGGTCACACAATCTGGCGCTCCTCCGCAGGGCTCTGAATGACGCGCGGTGCATCGTTTCTCAGAGCCGAAGGGCCTACAGgATATTACCCATCTCCTCCACGATGCCCCATACTAAGCCTCAGGATATGGGCTCTGCCTTCATCCAGACTCAGCAGCTCAATGCTGCCATGGCAGACACCTTCTTGGAGCACATGTGTCTGCTGGATATCGACTCTGAGCCCACCATCGCCCGCAACACTGGAATCATCTGCACCATCGGGCCGGCCTCTCGCTCTGTGGATACGCTGAAGGAGATGATCAAGTCTGGAATGAACATTGCTCGTCTCAACTTCTCTCACGGCTCGCATGAGTATCACGgtgaaactattaaaaatgtacgtGAAGCGTGTGCCAGCTTCGAGCCGGGCAGCATCCAGTACAGGCCAGTGGGCATCGCTCTAGACACCAAGGGACCAGAAATCCGAACCGGACTCATTAAAGGGAGCGGCACGGCTGAGGTCGAGCTGAAGAAGGGGAATAAGATCAAAGTGACCTTAGACGATTCTTTCATGGAGAACTGTGACGAGGATACGCTCTGGCTGGACTACAAGAACATCACCAAAGTGGTTGAAGTGGGCAGCAAGGTCTATATTGATGATGGACTCATTTCTCTCCAGGTCCAGGAGATCGGTTCTGACTATCTGCTGTGTGAAATTGAGAACGGAGGAACTCTGGGTAGTAAGAAGGGTGTCAATCTGCCGGGTGCCGCGGTCGACCTGCCCGCCGTCTCCGCGAAAGACGTCAAGGACCTGCAGTTCGGCGTGCAGATGGGAGTCGACATGATCTTTGCCTCTTTCATCCGCAAGGCAGCTGATGTGCACGAGGTGCGCAAAGTGCTGGGAGAGAAGGGCAAGAACATCAAGATCATCAGCAAGCTGGAGAACCACGAGGGCGTGCGCAGGTTTGATGAGATCATGGAGGCCAGTGATGGCATCATGGTCGCTCGAGGAGACCTTGGTATTGAAATCCCCACAGAAAAGGTCTTTCTGGCCCAGAAGATGATGATTGGTCGCTGCAACAAAGCAGGAAAGCCAATCATCTGTGCCACTCAGATGTTGGAGAGCATGATCAAGAAGCCTCGCCCCACGCGTGCCGAGGGCAGCGACGTGGCCAACGCCGTTCTGGACGGAGCCGACTGCATCATGCTGAGCGGAGAGACGGCTAAAGGAGACTATCCTCTGGAGGCCGTCCGCACCCAGCACATGATCGCTCGCGAGGCGGAGGCGGCCATGTTCCACCGTCAGGTGTTTGAGGACCTGCGTCGCTGTTTGCCGCCCTCCACCGACCCCGCCGAGGCCATCGCCATTGGCGCTGTGGAGGCCTCCTTTAAAATCCTGTCCTCCGCGTTTATAGTCCTCACTGGGTCCGGCAGGTCCGCTCACCTGATCTCCCGGTATCGCCCGCGTGCCCCGATCATCGCCGTGACCCGTAACGAGCAGACGGCCCGACAGGCTCATCTGTACCGCGGCATCTTCCCCGTGCTCTACAACAAGGCTTCCAACGACGTGTGGGCCGAGGACGTGGACCTCAGGGTCAATTTTGCCATGGATGTCGgtAAGGCTCGTGGGTTCTTCAAGCCCGGTGATGTGGTGATCGTCCTGACCGGTTGGCGTCCAGGCTCTGGTTACACTAACACCATGCGTGTCGTCCCGGTGCAGTAAACAGGACTCCCGCTCTTCATACATCACTCCCttccttcatcatcttcatcttcatcacacGAGCCTGGCTCCCGGCCAGTGGACCACCGTCACTTAGACATTTGTTCTCACTGCTTTCACTTCCTCCCGAGTCTCGAGCGTAATCTCCCACCCGTTTCTCCCGGGCTGTCTGTCGGTGTGCATGCTTGTGAAGCCTTTGAACAAACAGCAGCTTCCTGAAGCGAGCGTGCGGCGGAGGGCTCAGGCGTACTGTAACTCTCCCgttagttttatttgtagtgTTTAGTCTGTCGTGTGCTTTATTTGTGTTCACTCTCCTAATGATGTTACATTCTTTGTTGCACTTGTCCATGAGACCATTTGATTTGGGACGGGGCGACCAAtgtgctatatattttttttgaaatgttaacatTGGGATGCCTCGTCCGGCTCATTTCAGTGTGAGTTAGAGAACGACAGAGTTTCTGATTGAGCAGCGTCGGTCACATTCCCAGCATCCATCGGTCCTGTCCTTCCCCTCACGACGCACTTGTTTGTCTCTGCTGctcctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcgagtgtgtgttcAGATCTACCTGCTTTGTGTCGCTAGAGTGCAAGATGAACTTATAACTGTAAGAGTAAACTATAGTATCATTCTGAAGTGTTGTATTATTCAAGACTGAATTAATAAAGGAGATAAGCACCTGA
>XM_043236727.1
CGTGTTCGGGGGCTAATGTGGGCCTGGAGTCTCATTAGAGTCCTGCTCGTGCAGGACGGCAAGCGTGACTTGCGTGTTTTATCCTCTTCGAAGGGAAGAGGATTTAGCGCTCTGTGTCCTCGGCGGCACGATGCGTGCTGCTTCATTCTGGCCGGCGCCGCGATCGGGGAGGGAAGGTCACACAATCTGGCGCTCCTCCGCAGGGCTCTGAATGACGCGCGGTGCATCGTTTCTCAGAGCCGAAGGGCCTACAGgATATTACCCATCTCCTCCACGATGCCCCATACTAAGCCTCAGGATATGGGCTCTGCCTTCATCCAGACTCAGCAGCTCAATGCTGCCATGGCAGACACCTTCTTGGAGCACATGTGTCTGCTGGATATCGACTCTGAGCCCACCATCGCCCGCAACACTGGAATCATCTGCACCATCGGGCCGGCCTCTCGCTCTGTGGATACGCTGAAGGAGATGATCAAGTCTGGAATGAACATTGCTCGTCTCAACTTCTCTCACGGCTCGCATGAGTATCACGgtgaaactattaaaaatgtacgtGAAGCGTGTGCCAGCTTCGAGCCGGGCAGCATCCAGTACAGGCCAGTGGGCATCGCTCTAGACACCAAGGGACCAGAAATCCGAACCGGACTCATTAAAGGGAGCGGCACGGCTGAGGTCGAGCTGAAGAAGGGGAATAAGATCAAAGTGACCTTAGACGATTCTTTCATGGAGAACTGTGACGAGGATACGCTCTGGCTGGACTACAAGAACATCACCAAAGTGGTTGAAGTGGGCAGCAAGGTCTATATTGATGATGGACTCATTTCTCTCCAGGTCCAGGAGATCGGTTCTGACTATCTGCTGTGTGAAATTGAGAACGGAGGAACTCTGGGTAGTAAGAAGGGTGTCAATCTGCCGGGTGCCGCGGTCGACCTGCCCGCCGTCTCCGCGAAAGACGTCAAGGACCTGCAGTTCGGCGTGCAGATGGGAGTCGACATGATCTTTGCCTCTTTCATCCGCAAGGCAGCTGATGTGCACGAGGTGCGCAAAGTGCTGGGAGAGAAGGGCAAGAACATCAAGATCATCAGCAAGCTGGAGAACCACGAGGGCGTGCGCAGGTTTGATGAGATCATGGAGGCCAGTGATGGCATCATGGTCGCTCGAGGAGACCTTGGTATTGAAATCCCCACAGAAAAGGTCTTTCTGGCCCAGAAGATGATGATTGGTCGCTGCAACAAAGCAGGAAAGCCAATCATCTGTGCCACTCAGATGTTGGAGAGCATGATCAAGAAGCCTCGCCCCACGCGTGCCGAGGGCAGCGACGTGGCCAACGCCGTTCTGGACGGAGCCGACTGCATCATGCTGAGCGGAGAGACGGCTAAAGGAGACTATCCTCTGGAGGCCGTCCGCACCCAGCACATGATCGCCCGAGAGGCCGAGGCGGCCATGTTCCACAGGCAGCTGTTCGAGGAGCTGCGGCGCTCCACCCGTCTGACCCACGACCCTTCAGACGCTGTAGCTGTGGGCGCCGTCGAGTCCTCCTTCAAATGCTGCGCCAGCGCCCTTATTGTGCTCACCAAGACCGGCAGGTCCGCTCACCTGATCTCCCGGTATCGCCCGCGTGCCCCGATCATCGCCGTGACCCGTAACGAGCAGACGGCCCGACAGGCTCATCTGTACCGCGGCATCTTCCCCGTGCTCTACAACAAGGCTTCCAACGACGTGTGGGCCGAGGACGTGGACCTCAGGGTCAATTTTGCCATGGATGTCGgtAAGGCTCGTGGGTTCTTCAAGCCCGGTGATGTGGTGATCGTCCTGACCGGTTGGCGTCCAGGCTCTGGTTACACTAACACCATGCGTGTCGTCCCGGTGCAGTAAACAGGACTCCCGCTCTTCATACATCACTCCCttccttcatcatcttcatcttcatcacacGAGCCTGGCTCCCGGCCAGTGGACCACCGTCACTTAGACATTTGTTCTCACTGCTTTCACTTCCTCCCGAGTCTCGAGCGTAATCTCCCACCCGTTTCTCCCGGGCTGTCTGTCGGTGTGCATGCTTGTGAAGCCTTTGAACAAACAGCAGCTTCCTGAAGCGAGCGTGCGGCGGAGGGCTCAGGCGTACTGTAACTCTCCCgttagttttatttgtagtgTTTAGTCTGTCGTGTGCTTTATTTGTGTTCACTCTCCTAATGATGTTACATTCTTTGTTGCACTTGTCCATGAGACCATTTGATTTGGGACGGGGCGACCAAtgtgctatatattttttttgaaatgttaacatTGGGATGCCTCGTCCGGCTCATTTCAGTGTGAGTTAGAGAACGACAGAGTTTCTGATTGAGCAGCGTCGGTCACATTCCCAGCATCCATCGGTCCTGTCCTTCCCCTCACGACGCACTTGTTTGTCTCTGCTGctcctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcgagtgtgtgttcAGATCTACCTGCTTTGTGTCGCTAGAGTGCAAGATGAACTTATAACTGTAAGAGTAAACTATAGTATCATTCTGAAGTGTTGTATTATTCAAGACTGAATTAATAAAGGAGATAAGCACCTGA
>XM_043236728.1
CCGAAAAAGCGGTTATCGTGACGTTTTTATAGTTTGACGTCACTAGTATTCATCCGCGCGTGCCTTCGACGGAAGTAGTTCCCGGTAGGTTTGGCGGATCACCTTGAGCTCGAGATCCGGAGCGCATCAGTCTCGGCCCGACCACCAACGGACGCAGgATATTACCCATCTCCTCCACGATGCCCCATACTAAGCCTCAGGATATGGGCTCTGCCTTCATCCAGACTCAGCAGCTCAATGCTGCCATGGCAGACACCTTCTTGGAGCACATGTGTCTGCTGGATATCGACTCTGAGCCCACCATCGCCCGCAACACTGGAATCATCTGCACCATCGGGCCGGCCTCTCGCTCTGTGGATACGCTGAAGGAGATGATCAAGTCTGGAATGAACATTGCTCGTCTCAACTTCTCTCACGGCTCGCATGAGTATCACGgtgaaactattaaaaatgtacgtGAAGCGTGTGCCAGCTTCGAGCCGGGCAGCATCCAGTACAGGCCAGTGGGCATCGCTCTAGACACCAAGGGACCAGAAATCCGAACCGGACTCATTAAAGGGAGCGGCACGGCTGAGGTCGAGCTGAAGAAGGGGAATAAGATCAAAGTGACCTTAGACGATTCTTTCATGGAGAACTGTGACGAGGATACGCTCTGGCTGGACTACAAGAACATCACCAAAGTGGTTGAAGTGGGCAGCAAGGTCTATATTGATGATGGACTCATTTCTCTCCAGGTCCAGGAGATCGGTTCTGACTATCTGCTGTGTGAAATTGAGAACGGAGGAACTCTGGGTAGTAAGAAGGGTGTCAATCTGCCGGGTGCCGCGGTCGACCTGCCCGCCGTCTCCGCGAAAGACGTCAAGGACCTGCAGTTCGGCGTGCAGATGGGAGTCGACATGATCTTTGCCTCTTTCATCCGCAAGGCAGCTGATGTGCACGAGGTGCGCAAAGTGCTGGGAGAGAAGGGCAAGAACATCAAGATCATCAGCAAGCTGGAGAACCACGAGGGCGTGCGCAGGTTTGATGAGATCATGGAGGCCAGTGATGGCATCATGGTCGCTCGAGGAGACCTTGGTATTGAAATCCCCACAGAAAAGGTCTTTCTGGCCCAGAAGATGATGATTGGTCGCTGCAACAAAGCAGGAAAGCCAATCATCTGTGCCACTCAGATGTTGGAGAGCATGATCAAGAAGCCTCGCCCCACGCGTGCCGAGGGCAGCGACGTGGCCAACGCCGTTCTGGACGGAGCCGACTGCATCATGCTGAGCGGAGAGACGGCTAAAGGAGACTATCCTCTGGAGGCCGTCCGCACCCAGCACATGATCGCTCGCGAGGCGGAGGCGGCCATGTTCCACCGTCAGGTGTTTGAGGACCTGCGTCGCTGTTTGCCGCCCTCCACCGACCCCGCCGAGGCCATCGCCATTGGCGCTGTGGAGGCCTCCTTTAAAATCCTGTCCTCCGCGTTTATAGTCCTCACTGGGTCCGGCAGGTCCGCTCACCTGATCTCCCGGTATCGCCCGCGTGCCCCGATCATCGCCGTGACCCGTAACGAGCAGACGGCCCGACAGGCTCATCTGTACCGCGGCATCTTCCCCGTGCTCTACAACAAGGCTTCCAACGACGTGTGGGCCGAGGACGTGGACCTCAGGGTCAATTTTGCCATGGATGTCGgtAAGGCTCGTGGGTTCTTCAAGCCCGGTGATGTGGTGATCGTCCTGACCGGTTGGCGTCCAGGCTCTGGTTACACTAACACCATGCGTGTCGTCCCGGTGCAGTAAACAGGACTCCCGCTCTTCATACATCACTCCCttccttcatcatcttcatcttcatcacacGAGCCTGGCTCCCGGCCAGTGGACCACCGTCACTTAGACATTTGTTCTCACTGCTTTCACTTCCTCCCGAGTCTCGAGCGTAATCTCCCACCCGTTTCTCCCGGGCTGTCTGTCGGTGTGCATGCTTGTGAAGCCTTTGAACAAACAGCAGCTTCCTGAAGCGAGCGTGCGGCGGAGGGCTCAGGCGTACTGTAACTCTCCCgttagttttatttgtagtgTTTAGTCTGTCGTGTGCTTTATTTGTGTTCACTCTCCTAATGATGTTACATTCTTTGTTGCACTTGTCCATGAGACCATTTGATTTGGGACGGGGCGACCAAtgtgctatatattttttttgaaatgttaacatTGGGATGCCTCGTCCGGCTCATTTCAGTGTGAGTTAGAGAACGACAGAGTTTCTGATTGAGCAGCGTCGGTCACATTCCCAGCATCCATCGGTCCTGTCCTTCCCCTCACGACGCACTTGTTTGTCTCTGCTGctcctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcgagtgtgtgttcAGATCTACCTGCTTTGTGTCGCTAGAGTGCAAGATGAACTTATAACTGTAAGAGTAAACTATAGTATCATTCTGAAGTGTTGTATTATTCAAGACTGAATTAATAAAGGAGATAAGCACCTGA

Function

symbol description
pkma Predicted to enable pyruvate kinase activity. Involved in sprouting angiogenesis. Predicted to be active in cytoplasm. Is expressed in several structures, including nervous system; neural tube; otic vesicle; pericardial region; and solid lens vesicle. Orthologous to human PKM (pyruvate kinase M1/2).

NR:

description
PREDICTED: pyruvate kinase PKM-like isoform X1

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0016310 phosphorylation biological_process
GO:0030955 potassium ion binding molecular_function
GO:0000287 magnesium ion binding molecular_function
GO:0004743 pyruvate kinase activity molecular_function

KEGG:

id description
K00873 PK, pyk; pyruvate kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236726.1 False 2599 mRNA 0.54 11 28368455 28380614
XM_043236727.1 True 2599 mRNA 0.54 11 28368455 28380614
XM_043236728.1 False 2502 mRNA 0.54 11 28368455 28382557

Neighbor

gene id symbol gene type direction distance location
LOC122343218 omp,ompa,LOC107735103 coding downstream 155408 28212246 ~ 28213047 (-)
LOC122342473 znf362b,LOC107593390,LOC107737708,LOC107565834,LOC107699608,LOC107712695,LOC107671956,LOC108434701 coding downstream 190869 28171251 ~ 28177586 (-)
LOC122342469 si:dkeyp-113d7.1,LOC107727714,LOC107549870,LOC107563030,LOC107665141,LOC103032369 coding downstream 250123 28113502 ~ 28118332 (-)
jupb jupb,LOC107562513,LOC107752531,LOC107549862,LOC107665165,LOC105013272,LOC108438403 coding downstream 330755 27981070 ~ 28037700 (-)
wipf2b wipf2b,LOC107752530,LOC107549849,LOC107562512,LOC107665117 coding downstream 391280 27969910 ~ 27977175 (-)
LOC122342383 NA coding upstream 571791 28954348 ~ 28956291 (-)
LOC122343220 NA non-coding downstream 48622 28282039 ~ 28319833 (-)
G31765 NA non-coding downstream 118348 28244990 ~ 28250107 (-)
G31759 NA non-coding downstream 140154 28226414 ~ 28228301 (-)
LOC122342474 NA non-coding downstream 238647 28127214 ~ 28129808 (-)
G31737 NA non-coding downstream 271964 28095894 ~ 28096491 (-)
G31777 NA non-coding upstream 4684 28387241 ~ 28387769 (-)
G31786 NA non-coding upstream 19148 28401705 ~ 28405804 (-)
G31804 celf6,LOC106911022 non-coding upstream 139997 28522554 ~ 28526332 (-)
G31798 NA non-coding upstream 141081 28523638 ~ 28541749 (-)
G31808 NA non-coding upstream 163918 28546475 ~ 28548926 (-)
G31776 LOC107712874 other downstream 3259 28364025 ~ 28365196 (-)
LOC122342472 znf384l,LOC107665159,LOC107752514 other downstream 181198 28181566 ~ 28187257 (-)
LOC122342471 si:dkeyp-113d7.10,LOC107753946,LOC107666338,LOC107563029,LOC107727707,LOC107549831 other downstream 238075 28120247 ~ 28130380 (-)
eif1 eif1b,LOC107549864,LOC103043673,LOC107666344,LOC107665169 other downstream 300693 28065297 ~ 28067762 (-)
G31508 LOC106519560,LOC107665151,LOC102211354,LOC101487824,LOC102313318,LOC102779181 other downstream 723723 27642692 ~ 27644732 (-)
G31868 NA other upstream 461636 28844193 ~ 28846421 (-)
G31890 NA other upstream 590796 28973353 ~ 29012765 (-)

Expression


Co-expression Network