scyl2 (scyl2,si:ch211-244b2.1,LOC107755162)


Basic Information

Item Value
gene id scyl2
gene name scyl2,si:ch211-244b2.1,LOC107755162
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13446957 ~ 13458895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236729.1
ATACTGGTACTTACTACTACTTATAAATCACTGTAAttacattagtttttttgtagatgcactttaattgtttgatgttttaaattcaataaaatgaattcaaaactcGCATTCTGtctcttattatttaaaaatatgaatataaatatgacaaTAATGTCTAAGAAATTTGCGAAGCGATCAagtttaaatgatgttttcattAAGCAAGAAGAATATAAGGAGGGTAAATAGTTTTATTACGATTGTTAAGACATAATATTAGGGTCCCAAGATGAAATCTAATAAAAACGGGAGTTGGTCCACagctcatattttgaaaattggGACTTTTATCATCGCTAATTCACGCGCCGAGCGTTTCTTCCGGCTTCGCGGCGCTGAATCTCTCAGGTGTTTTGATGAAGTGTCATGGAGGCTGTTAGCCACCACCACTGCTGACGGTTTCGTTACTGTCTAAATCCCGCTTTTAATCGCTCCACCTCACTGTCAGCTCCCCGAGTGCAAAGGTTGACAGCCGGTGGAACCATGGAGTCCATGCTCAATAAACTAAAGAGCACCGTCACCAAGGTGACGGCTGATGTGACCAGTGCCGTCATGGGCAACCCTGTCACGCGAGAGTTCGAGGTGGGCCGACATATCGCCAGCGGGGGTCCAGGAATGAGCTGGAGGATCTACAACGGCACCAAAAAGTCCACCAAACAGGAAGTGGCAGTCTTCGTGTTCGATAAGAAGATCATCGATCGCTATCAGAAGTTCGAGAAGGATCAGATCATCGATTCGCTGAAGAAAGGAGTCCAACAGCTGACGCGGTTACGGCATCCGCGCCTCCTCACGGTTCAGCACCCTCTGGAGGAGTCCAGAGACTGTCTGGCGTTCTGCACGGAGCCTGTGTTTGCCAGTCTGGCGAATGTGCTCGGCCAGTGGGACAACCTCCCTAGTCCTGTTCCCACAGATATCAAAGAATACAAGCTCTACGACGTTGAGACCAAATACGGCTTACTGCAGgtcTCGGAGGGTTTGTCGTTCCTCCACAGCGGGGTTAAAATGGTTCATGGGAACTTGTGTCCAGAGAACATCATCTTGAATAAGAGCGGAGCCTGGAAGATCATGGGCTTCGACTTCAGTATCTCCTCTAGTAACCCGTCTGACACCGAGCCCAAGTATGTTTGTAAAGAGTGGGACCCCAATCTACCGCCCCTTTGCCTTCCGAACCCCGAATACGTCGCTCCGGAGTACATCCTGTCCGTCAGCTGTGACGCGGCCTCTGACATGTATTCCCTGGGCGTATTGATCCACGCCGTGTTTAATGAAGGCAAGCCTGTCTTTCAGGTCAACAAGCAGGACATATTCAAGAGCTTCAGTCGACAGCTGGACCAGTTGAGCCACCTGAGTCCAGGATTATTGAGTCAGATCCCAGAGGAGGTCAGGGAACACGTGAAGATGCTGCTCAGCGTCACCTCAAACGTGCGCCCAGATGCAGATCAGATGACAAAGATTCCCTTCTTCGATGATGTTGGAGCGATGACCCTTCAGTACTTCGACTCGCTCTTTCAACGGGATAACTTACAGAAGTCTCAGTTCTACAAAAGCCTCCCCAAAGTCCTGCCCAAGCTACCCAAGAGAGTGATCGTATACAGAATCCTCCCGGCGCTCACGTCCGAGTTTGTCAATCCCGACATGGTTCCGTTCGTTCTTCCCAATGTGCTGCTCATCGCCGAGGAGTGCACAAAGGAGGAATACATCCGCCTTGTTCTCCCTGACCTCACACCGGTTTTCAAACAGCAGGAGCCAgtacagGCTAGCAACATGATCCTGCTGATATTTCTGCAAAAGATGGACCTTCTTTTGACCAAAACGCCTCCTGAAGACATCAAGAACAGCGTTCTGCCCATGGTGTACAGAGCAGTGGAGGCCCCCTCCATTCAAATACAGGAACTCTGTCTAAATATCATTCCCACGTTTGCCAATCTAATCGAGTACCCTTCCATGAAGAACGCACTTATCCCTCGTATCAAATCTGCTTGTTTACAGACATCCTCGCTAGCGGTGAGGGTGAACTCTTTAGTGTGCCTAGGCAAGATTCTGGAATACCTGGATAAATGGTTCGTCATTGACGAAATTCTACCGTTCCTGCAACAAATTCCATCCAGGGAACCAGCCGTGCTCATGGGCGTTCTGGgCATCTATAAGTGCACTTTCACCCATAAGAAACTGGGCATCCCAAAAGAGCACCTGGCTGCGAAGAGTTTACCTCATCTGGTCTCGCTTAGCATCGATAACAACCTCAACCTTAACCAGTTTAACTCGTTCATGGCTGTGATCAAGGAGATGTTGAATCGCATGGAGGCCGAGCACAAGACCAAATTAGAGCAGCTGCACATCATGCAAGAGCAGCAAAGGAGTTTAAACATAAACCCGATGAACCAATCAGAGGAGACTAAGAACACGCCCAGCCCAGCCACACAAGTCAGAGACATCGATGAGATCTTCGGCGGCGGTTCGGGGAGTGCAGGTGTGAACGGGAAAGAGAACGGTTCCTCATCAACCGTTTCTCAGCCCTCGCGAGTGTCTCTCACCCTGGAAGAAAAGCAGCGTTTGGCTAAAGAACAGGAACAGGCAGCCAAACTAAGAAGCCAGCAGCCTCTGGCTCCACAGAGCGTCAAACCGGCCGCATCGACACctcagGCGAAGGATCTGACCAGCAGTCTTCTGAACAACATGACATCTCTGAACAGCCTCTCTTTGAACTCTGGGACCAGGACGATGCCCATGCAGGGCAGCACTATACCCTCAACCTTCCCAGCTGGACCCACCATGAGTGGAATGGGCACCATGGGCATCAGCAATGGTTTCAACTCTCCCATGGGATTCCAGACGGGAAGTATGGGAATGGGCATGAGACCTGCTGCTCCCAGCCTCTACGGAGGCATGGCCACCACTACTAGCACTCCGAATTTCGGTGCCCTCAGCCAGaaccaaaaccaaaaccaaCCCAGCAAGCCTGCAGACATGTCGGCCCTAGACTCCCTCTTCACTTCTAGCAAACCCAAAGTCAGCATGAACCAAATGGCTCCTAAACCGACCCCGGGAGCAACCGCGCCTTCCCCGTGGCTCAGTCAGTTTGGGCCAGGCCAGCCTTCCCAGAATGCACCCATGCAGGCGACTCCGATGGGGATGACGGGAGTTCAGGGTGGGTTCGGAATGCAAGCAAACCCGTTCTTCAACCCTCAGAACTTCTCGCAACCTGTGGCCTCTTCAACAATGAACCCTGGGGCGATGAAGCAGAGCGCTTCGGTCAGCAACGATCTGAAGGACCTCTTCGGATAAAACTCTTGCCTTTTCGCTCGTGTTTTCCCCCCCCGGAACGGGCCGGAATCAAAACGAAACAACATCAGCAGCGAAGATGACAATTTGGTTGGACATGGCGTCCTTGAAAGACAGTGTTTGAAAAGTTCTGGTttgttttgtcttcatttttttttttttaaccctcatCAATGGTGCACTTATCTTCTCGAGTGAATCGACGGCACCAAACAAAAATCGTGTTTCTACAGAAAGCTCGGGCTCTTCCACCGAAAGCTGCTTTCATCGGTGGAAGCGTCGCATTCGTCGTATCGTCGGATTTGACGCGTGCCCAAGAAGATACAAAAGGAGTCACAAACTCGAGCTCTTTCGGGTTCATTTCCTTTTTGCTTGAGCCTCACGTGCCCCGAAGTGAGTCGACTTCCTCTACCAGAACAAACTTTATCGTTGGCTTCGCTGTTTTGCCGATTCGCGAAAAGTAAAGGAACAGGTGGCGGAGTCCGTAGTTTCGAGCCGGAATGAGCGTTTTTATAATTGTGTACATATATTGTATCTGGTGATTGTTGTTTGATACATGATCcactgaggtaaaaaaaaaaaatcttaggaAGGACGCTGTCTTCATACTGTAGGTGCACTAAATGTAAtagagattttaaaaattatattaaaaaaaatgtaggttttG
>XM_043236730.1
ATACTGGTACTTACTACTACTTATAAATCACTGTAAttacattagtttttttgtagatgcactttaattgtttgatgttttaaattcaataaaatgaattcaaaactcGCATTCTGtctcttattatttaaaaatatgaatataaatatgacaaTAATGTCTAAGAAATTTGCGAAGCGATCAagtttaaatgatgttttcattAAGCAAGAAGAATATAAGGAGGGTAAATAGTTTTATTACGATTGTTAAGACATAATATTAGGGTCCCAAGATGAAATCTAATAAAAACGGGAGTTGGTCCACagctcatattttgaaaattggGACTTTTATCATCGCTAATTCACGCGCCGAGCGTTTCTTCCGGCTTCGCGGCGCTGAATCTCTCAGGTGTTTTGATGAAGTGTCATGGAGGCTGTTAGCCACCACCACTGCTGACGGTTTCGTTACTGTCTAAATCCCGCTTTTAATCGCTCCACCTCACTGTCAGCTCCCCGAGTGCAAAGGTTGACAGCCGGTGGAACCATGGAGTCCATGCTCAATAAACTAAAGAGCACCGTCACCAAGGTGACGGCTGATGTGACCAGTGCCGTCATGGGCAACCCTGTCACGCGAGAGTTCGAGGTGGGCCGACATATCGCCAGCGGGGGTCCAGGAATGAGCTGGAGGATCTACAACGGCACCAAAAAGTCCACCAAACAGGAAGTGGCAGTCTTCGTGTTCGATAAGAAGATCATCGATCGCTATCAGAAGTTCGAGAAGGATCAGATCATCGATTCGCTGAAGAAAGGAGTCCAACAGCTGACGCGGTTACGGCATCCGCGCCTCCTCACGGTTCAGCACCCTCTGGAGGAGTCCAGAGACTGTCTGGCGTTCTGCACGGAGCCTGTGTTTGCCAGTCTGGCGAATGTGCTCGGCCAGTGGGACAACCTCCCTAGTCCTGTTCCCACAGATATCAAAGAATACAAGCTCTACGACGTTGAGACCAAATACGGCTTACTGCAGgtcTCGGAGGGTTTGTCGTTCCTCCACAGCGGGGTTAAAATGGTTCATGGGAACTTGTGTCCAGAGAACATCATCTTGAATAAGAGCGGAGCCTGGAAGATCATGGGCTTCGACTTCAGTATCTCCTCTAGTAACCCGTCTGACACCGAGCCCAAGTATGTTTGTAAAGAGTGGGACCCCAATCTACCGCCCCTTTGCCTTCCGAACCCCGAATACGTCGCTCCGGAGTACATCCTGTCCGTCAGCTGTGACGCGGCCTCTGACATGTATTCCCTGGGCGTATTGATCCACGCCGTGTTTAATGAAGGCAAGCCTGTCTTTCAGGTCAACAAGCAGGACATATTCAAGAGCTTCAGTCGACAGCTGGACCAGTTGAGCCACCTGAGTCCAGGATTATTGAGTCAGATCCCAGAGGAGGTCAGGGAACACGTGAAGATGCTGCTCAGCGTCACCTCAAACGTGCGCCCAGATGCAGATCAGATGACAAAGATTCCCTTCTTCGATGATGTTGGAGCGATGACCCTTCAGTACTTCGACTCGCTCTTTCAACGGGATAACTTACAGAAGTCTCAGTTCTACAAAAGCCTCCCCAAAGTCCTGCCCAAGCTACCCAAGAGAGTGATCGTATACAGAATCCTCCCGGCGCTCACGTCCGAGTTTGTCAATCCCGACATGGTTCCGTTCGTTCTTCCCAATGTGCTGCTCATCGCCGAGGAGTGCACAAAGGAGGAATACATCCGCCTTGTTCTCCCTGACCTCACACCGGTTTTCAAACAGCAGGAGCCAgtacagATCCTGCTGATATTTCTGCAAAAGATGGACCTTCTTTTGACCAAAACGCCTCCTGAAGACATCAAGAACAGCGTTCTGCCCATGGTGTACAGAGCAGTGGAGGCCCCCTCCATTCAAATACAGGAACTCTGTCTAAATATCATTCCCACGTTTGCCAATCTAATCGAGTACCCTTCCATGAAGAACGCACTTATCCCTCGTATCAAATCTGCTTGTTTACAGACATCCTCGCTAGCGGTGAGGGTGAACTCTTTAGTGTGCCTAGGCAAGATTCTGGAATACCTGGATAAATGGTTCGTCATTGACGAAATTCTACCGTTCCTGCAACAAATTCCATCCAGGGAACCAGCCGTGCTCATGGGCGTTCTGGgCATCTATAAGTGCACTTTCACCCATAAGAAACTGGGCATCCCAAAAGAGCACCTGGCTGCGAAGAGTTTACCTCATCTGGTCTCGCTTAGCATCGATAACAACCTCAACCTTAACCAGTTTAACTCGTTCATGGCTGTGATCAAGGAGATGTTGAATCGCATGGAGGCCGAGCACAAGACCAAATTAGAGCAGCTGCACATCATGCAAGAGCAGCAAAGGAGTTTAAACATAAACCCGATGAACCAATCAGAGGAGACTAAGAACACGCCCAGCCCAGCCACACAAGTCAGAGACATCGATGAGATCTTCGGCGGCGGTTCGGGGAGTGCAGGTGTGAACGGGAAAGAGAACGGTTCCTCATCAACCGTTTCTCAGCCCTCGCGAGTGTCTCTCACCCTGGAAGAAAAGCAGCGTTTGGCTAAAGAACAGGAACAGGCAGCCAAACTAAGAAGCCAGCAGCCTCTGGCTCCACAGAGCGTCAAACCGGCCGCATCGACACctcagGCGAAGGATCTGACCAGCAGTCTTCTGAACAACATGACATCTCTGAACAGCCTCTCTTTGAACTCTGGGACCAGGACGATGCCCATGCAGGGCAGCACTATACCCTCAACCTTCCCAGCTGGACCCACCATGAGTGGAATGGGCACCATGGGCATCAGCAATGGTTTCAACTCTCCCATGGGATTCCAGACGGGAAGTATGGGAATGGGCATGAGACCTGCTGCTCCCAGCCTCTACGGAGGCATGGCCACCACTACTAGCACTCCGAATTTCGGTGCCCTCAGCCAGaaccaaaaccaaaaccaaCCCAGCAAGCCTGCAGACATGTCGGCCCTAGACTCCCTCTTCACTTCTAGCAAACCCAAAGTCAGCATGAACCAAATGGCTCCTAAACCGACCCCGGGAGCAACCGCGCCTTCCCCGTGGCTCAGTCAGTTTGGGCCAGGCCAGCCTTCCCAGAATGCACCCATGCAGGCGACTCCGATGGGGATGACGGGAGTTCAGGGTGGGTTCGGAATGCAAGCAAACCCGTTCTTCAACCCTCAGAACTTCTCGCAACCTGTGGCCTCTTCAACAATGAACCCTGGGGCGATGAAGCAGAGCGCTTCGGTCAGCAACGATCTGAAGGACCTCTTCGGATAAAACTCTTGCCTTTTCGCTCGTGTTTTCCCCCCCCGGAACGGGCCGGAATCAAAACGAAACAACATCAGCAGCGAAGATGACAATTTGGTTGGACATGGCGTCCTTGAAAGACAGTGTTTGAAAAGTTCTGGTttgttttgtcttcatttttttttttttaaccctcatCAATGGTGCACTTATCTTCTCGAGTGAATCGACGGCACCAAACAAAAATCGTGTTTCTACAGAAAGCTCGGGCTCTTCCACCGAAAGCTGCTTTCATCGGTGGAAGCGTCGCATTCGTCGTATCGTCGGATTTGACGCGTGCCCAAGAAGATACAAAAGGAGTCACAAACTCGAGCTCTTTCGGGTTCATTTCCTTTTTGCTTGAGCCTCACGTGCCCCGAAGTGAGTCGACTTCCTCTACCAGAACAAACTTTATCGTTGGCTTCGCTGTTTTGCCGATTCGCGAAAAGTAAAGGAACAGGTGGCGGAGTCCGTAGTTTCGAGCCGGAATGAGCGTTTTTATAATTGTGTACATATATTGTATCTGGTGATTGTTGTTTGATACATGATCcactgaggtaaaaaaaaaaaatcttaggaAGGACGCTGTCTTCATACTGTAGGTGCACTAAATGTAAtagagattttaaaaattatattaaaaaaaatgtaggttttG

Function

symbol description
scyl2 Predicted to enable ATP binding activity and protein kinase activity. Predicted to act upstream of or within protein phosphorylation. Human ortholog(s) of this gene implicated in arthrogryposis multiplex congenita-4. Orthologous to human SCYL2 (SCY1 like pseudokinase 2).

NR:

description
SCY1-like protein 2 isoform X1

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K17541 SCYL2; SCY1-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236729.1 True 3997 mRNA 0.49 19 13446957 13458895
XM_043236730.1 False 3985 mRNA 0.49 18 13446957 13458895

Neighbor

gene id symbol gene type direction distance location
depdc4 si:ch211-265o23.1,LOC107755163,LOC107689232,LOC107597010 coding upstream 136 13440636 ~ 13446821 (+)
metap2a metap2a,LOC107689230,LOC107597011,LOC107755160,LOC106576295,LOC100194705 coding upstream 14270 13423238 ~ 13432687 (+)
lamb1b lamb1b,LOC107755155,LOC107689224 coding upstream 101896 13326365 ~ 13345061 (+)
LOC122342559 si:dkey-183c16.7,LOC107689220,LOC107755152 coding upstream 120998 13305744 ~ 13325959 (+)
tnni1d tnni1d,LOC107597014,LOC108280151,LOC103374597 coding downstream 38845 13497740 ~ 13501524 (+)
LOC122342856 LOC107689257,LOC107726829 coding downstream 65055 13523950 ~ 13530743 (+)
iqsec3a iqsec3,iqsec3a,LOC107689235,LOC107748472,LOC107689713,LOC107584743 coding downstream 76229 13535124 ~ 13632058 (+)
LOC122343497 parp11,LOC107726831,LOC107689238,LOC107597042,LOC107748476,LOC107584716,LOC108280019 coding downstream 206764 13665659 ~ 13669633 (+)
LOC122343498 LOC107726847,LOC107689239,LOC107597006 coding downstream 210878 13669773 ~ 13673709 (+)
G28295 NA non-coding upstream 6935 13437936 ~ 13440022 (+)
G28248 NA non-coding upstream 72991 13247769 ~ 13373966 (+)
G28267 NA non-coding upstream 125841 13312934 ~ 13321116 (+)
G28256 NA non-coding upstream 214974 13231664 ~ 13231983 (+)
G28255 NA non-coding upstream 216403 13230162 ~ 13230554 (+)
G28298 NA non-coding downstream 8509 13467404 ~ 13470135 (+)
G28312 NA non-coding downstream 51961 13510856 ~ 13513593 (+)
LOC122343375 NA non-coding downstream 57735 13516630 ~ 13520457 (+)
G28446 NA non-coding downstream 299072 13757967 ~ 13760112 (+)
G28486 NA non-coding downstream 369130 13828025 ~ 13828537 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other upstream 13351 13405929 ~ 13433606 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other upstream 131273 13305669 ~ 13315684 (+)
kin kin,LOC102791470 other upstream 292599 13150736 ~ 13154358 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 1631652 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 1755828 11689314 ~ 11691129 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 423999 13882894 ~ 13961098 (+)
trmu trmu other downstream 526622 13985517 ~ 13991772 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other downstream 718535 14177430 ~ 14294618 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other downstream 941134 14400029 ~ 14482821 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other downstream 1698860 15157755 ~ 15214432 (+)

Expression


Co-expression Network