depdc4 (si:ch211-265o23.1,LOC107755163,LOC107689232,LOC107597010)


Basic Information

Item Value
gene id depdc4
gene name si:ch211-265o23.1,LOC107755163,LOC107689232,LOC107597010
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13440636 ~ 13446821 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236731.1
GCCAGcgaattattaattcatttacctttaaatgtaatatagttAACTAAAGATTCGCATTGTTAGACATGgggttattttattatttttttcgttTCGTAATTTGTAACTGCGTGGACTGGTACAAACGGGAGGGTAATGAAAGCAGTTCTAGGATCAGATTCGTTTAGAAAACGCACCGAATATCAATTCAGTCTCACAGGACTACTGCTGATCTCAGATCAGAGCCGCCGGtctatatattatgatataatacGACGTCGTCTATTATAGATCAGAGCGCCTTCGCGTCGACGTGCGTCACAGGCTGAGCGCGTGACGTCATTTCCGGTGCCGCGATGGCGGTGGATTTGACTCCTCGCTTCAGAAGGCTGAACAGTCAAAGCTGTTTTAGAGAAAATAAACAACTGCTAGGTACGAAAAAACGATTCATACAATTCACGCACGCGTACAACATCATTGAGGCTCTGAGGACGCAGGTGGAGCTCCGCCCCCGCAGACAGCACCTGCGTGTCTATCACGACTGCTTCACCGGCTCCGATGCTGTGGACGTGGTTCTGAGTCACCTCATGCAGAACATCTACTTCTGCTCCAGCGAAGTGTCCCGTCTCAAAGCCGCCAGGCTCTGCCAGGCCCTGATGGAGTCTAGAGTCTTCGAACCAATCGGGATAAAGCTCTTCAAACGAGAAAAAGAAATGACCTTTGAAGACTCCAGCTGCAGCCTCTACCGCTTTCTGGACGGATCGACCAAAAAGACACGCGGTGGCAGCGAGGACCAGACTCCAGACAAACAAACTGGAAAGAGGAAAACCACATCGAGgtttggagaaatgcagaCCATCTCCAACCCTTTGGTTCTCGGATCATCGGATAGAAGAGTGGAGAGACTGCTGAAGAACATAAACCTGCACCCATCTGTGCCCTCGGATTTGAATCGTGCTGCCGTTTCCAACAGCTTCCTgtcaaaaaaagTGGTGCGGGACGTTTGGAGGCAGCAGGCGTTGCTCCAGTTGCTACAGTTGGTTGAAATCTCTATGTTAGACCGTATCCTGTCCTCACCTGCCAAACCGGAGCCCCTGCGCTCGTCGTCTCTACGCCACCACGGTGACCTGGTCATCTCCAACACCTGCGTGGATCGAGAAGTGTCCGAGAGTCTCAACTTGCCCGAGCTGGACCCTTGGCTGACGGCAGCCGTGGATTGCCTCGATCTGTTCCCAGATCAGTTAATCGTGGTCGCCAGTGAACAGCTGATTCAACAGAACGGGAAGGAGAAGCAGAAGAGACTGCTGTTCGACACCATTGCCAAATATTACAACAGCCCAGAGAGACCTCCACTGCTGTCAGGACGATACACCGACATCCAGACCGGAATCCTGCATCTTTTGGATGGCGGGAGAGGTGAAGATGCCCTGAGAGCAGCTCAGCTCTGCTTGCAGTTGCTGGAGTCCACCAGCAGAGATGAGTTACGTAGACTGTTGGCTTTCATGGCAGCTGCTGCAGATAAAGAAGCTTTCAGACTGCACAAGCAGCTTGAGAACCGCGCTCTGGTCAGCAAGACGTTTGTGAAGGCCGTGGTCCTGAGCAAAGAAATGACTCGCGTCCAGTGTGAGCAGCTGCTGCTGTTCCTCGTGGATAATCACACGCGGCTCTTCAAGACGCCATCATCGCTGATTGAGGCCGTGAGGAAGACGCTTCAAACTCTGCGGCAAGGGAGGGATCTGAACAATGTAGCGCTGTTCGCCTTCTGCCAGCAGGTAACGCTCCAGCAGTACGAGGATAACAAAGATGAAGCCACTCTCGACGGTTTGAAGAAGTTGATGCGCCACATCGCTCACAGCGACGGCCTGTCCGTCAAACGGAAGAGACGACTGGCCAAACAGTTCCAGAAACATCACCCAGGGATTTTCCTCCAGCACTTCTTTTCCTCGTTCTAATAGCACTGGATGAAAATAgcctgtgaatgttttttttttttaatatgagtTATAGATGTAGACCCTTTTGGGAAGGTTTTGATGAATTCCACGAACCTTCCGATCCTTTCATAGACGGAAAAGGATCCTAAATCGTTGCAGTAGTCCGCGTGACATCCACGGGAACTTaggaaaatgctttttgtgcGCGGAGAAAACGCGTTCGGTTCACCCTATAGCGCCGTTTTGGAGTGTGTCGCATACAGAAACGATGTACGCTacgcaaaaaataataatagtcattttTGACACtaattgacagaatttttgaCGCTAATACTTTACACTTAATTTTATTAGTTGAAGGCATTTTGTACACAGTGGCTTCATCAGTTTCAGGACGGTGAGAACGCGCCCGTGTTTTACCTGATGTAACATAATTAGAAATTTATAACAAACGTGCAGCACTGTGCTTGTAGACGGGCGATTTAGTTTGCAAGTAGACTCGATTTGTACAAGCTTTAAGCTTTATCTGCAGGACCGGTCCgtaaaaaaaggaatataatGAAGTGCTGATCACTACATCTCAGTGTAGAATTACTTGAATTGTGTGAAATGCTCAggtcttttattattattattattattattatttttaaagctatcAGAAATAGTTTTAGCTGCACTTGAAATTAAGAAATGGATAACTACGCCTTAAAAGGTAGAAATTTGatttatgctctttttttttttgtaggtgaAAGGATCacttattaacttttttttgcaatgacTGTGAGCACAGATGttttctaattaatattaatgtattactGTGCAACTTCTGAGTTTTAAGTggattttgaattaaaatgtagcATAGCATagtgttactgttaaaaataaataaaaaatattcggGAAAGACAAAGGGACATTTATTACCAAGTAATGATCATGAGTAAGTTTAGGCATCGTTAGAATTTTATCAATTCCAATTCCGATTCTTATTGATTGTaatgtagtaaaaaaattaaaaaaggggTATAAAAATGAAGATGTTAAGCAGATTTTTTTGTCCCGTATTTTTTTCGTGTTATTAGCCAATTTTTACCAcctaaaaa

Function

symbol description
si:ch211-265o23.1 Predicted to act upstream of or within intracellular signal transduction. Orthologous to human DEPDC4 (DEP domain containing 4).

NR:

description
PREDICTED: DEP domain-containing protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236731.1 True 3037 mRNA 0.45 9 13440636 13446821

Neighbor

gene id symbol gene type direction distance location
metap2a metap2a,LOC107689230,LOC107597011,LOC107755160,LOC106576295,LOC100194705 coding upstream 7949 13423238 ~ 13432687 (+)
lamb1b lamb1b,LOC107755155,LOC107689224 coding upstream 95575 13326365 ~ 13345061 (+)
LOC122342559 si:dkey-183c16.7,LOC107689220,LOC107755152 coding upstream 114677 13305744 ~ 13325959 (+)
LOC122342558 LOC107689220,LOC107755152 coding upstream 122566 13313892 ~ 13318070 (+)
LOC122342560 si:dkey-183c16.7,LOC107689220,LOC107755152 coding upstream 130218 13306353 ~ 13310418 (+)
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding downstream 136 13446957 ~ 13458895 (+)
tnni1d tnni1d,LOC107597014,LOC108280151,LOC103374597 coding downstream 50919 13497740 ~ 13501524 (+)
LOC122342856 LOC107689257,LOC107726829 coding downstream 77129 13523950 ~ 13530743 (+)
iqsec3a iqsec3,iqsec3a,LOC107689235,LOC107748472,LOC107689713,LOC107584743 coding downstream 88303 13535124 ~ 13632058 (+)
LOC122343497 parp11,LOC107726831,LOC107689238,LOC107597042,LOC107748476,LOC107584716,LOC108280019 coding downstream 218838 13665659 ~ 13669633 (+)
G28295 NA non-coding upstream 614 13437936 ~ 13440022 (+)
G28248 NA non-coding upstream 66670 13247769 ~ 13373966 (+)
G28267 NA non-coding upstream 119520 13312934 ~ 13321116 (+)
G28256 NA non-coding upstream 208653 13231664 ~ 13231983 (+)
G28255 NA non-coding upstream 210082 13230162 ~ 13230554 (+)
G28298 NA non-coding downstream 20583 13467404 ~ 13470135 (+)
G28312 NA non-coding downstream 64035 13510856 ~ 13513593 (+)
LOC122343375 NA non-coding downstream 69809 13516630 ~ 13520457 (+)
G28446 NA non-coding downstream 311146 13757967 ~ 13760112 (+)
G28486 NA non-coding downstream 381204 13828025 ~ 13828537 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other upstream 7030 13405929 ~ 13433606 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other upstream 124952 13305669 ~ 13315684 (+)
kin kin,LOC102791470 other upstream 286278 13150736 ~ 13154358 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 1625331 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 1749507 11689314 ~ 11691129 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 436073 13882894 ~ 13961098 (+)
trmu trmu other downstream 538696 13985517 ~ 13991772 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other downstream 730609 14177430 ~ 14294618 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other downstream 953208 14400029 ~ 14482821 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other downstream 1710934 15157755 ~ 15214432 (+)

Expression


Co-expression Network