gnptab (gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515)


Basic Information

Item Value
gene id gnptab
gene name gnptab,LOC107695880,LOC107664853,LOC107725516,LOC107725515
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9024477 ~ 9041856 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236749.1
CGTCGTATCGTCACCTGATCGCTACCGACGAGGAACTGCAGCGTTTGATTGTTGAGCGCACGGTCATGTGACAGTATGTTTTCGTGCGACGACACCGTTTTTGATTTCACCGAAGGAGACGCGTGCCCTCGTTAAGTGTTTATGGAGGAGGAGATGTTGATGGCCCGGGAGAGTCATGCTGATCGTTAATTCCGTGCTTAAACTGCTGCAGCGACAGACCTACACCTGTCTGTCCCACCGCTACGGGCTGTACCTGTGCTTCGGGGGACTGGTCCTCATGATAGTGTCCGCGTTTCAGTTCGGAGAGGTTGTGGTGGAGTGGAGTCGGGATCAGTACCACGTTTTGTTTGATTCCTACAGAGATAATGTTGCAGGGAAGTCCTTCCAGACCAGGCTTTGCCTACCCATGCCCATCGATGTGGTTTACACCTGGGTAAATGGCACAGACGTTGACCTGCTGAAGGATCTTCGGGCCATGAGAAAGCAGCTGGAAGAAGAACAGAaggccttgagAGAGCGTCTCGGGAAAAATGCGTCTGAGATAACTGAAGCCCCTAAGGGAAGGCCTGAATGTCTGCTGTCCCACTGCATCATGGGTCCTGTGCTGGTGCTGGATCCGTCCCTTCCTGCCAACATCACACTGAAGGAGCTGCCAACACTTTCAGCAGCGTTCTCCACCACAAAGCAACTCTTACAGGTGGCCAAACCCCTCCACCCGTCCTCAAGCGTGTCTGTTCTTCTCTTCCACTCCCACAGCGAAGCTGAAAAAGCCCATACGGATGCTTTGAAGGACGCATTGACGCACTCCATCAGCAGAGGTTATCTGACGACTGATAAAGAGGCTCCGGGGCTGGTCCGCATGCAGACTCTGGCCTACTTGAGCGGCTTTCCAGCGTCTCTGAAGGAAACCGAGCAGCTCAGGGTCAAACTACCAGCTGTGGTGACCGGTAAAATCAAACAGTTGCAGCTGTACTCGGAGGCCAGTATTGCTCTCCTCCACCTAAACACAGCGCAAGATTTTACTGACCTCACCCAGCAGGCCAAGAAGAACCTGACGCTGGAAGGCAAAGAGCTCACGGTCAGTCCGGCGTACCTGTTCTGGGACCTCAGCGCGATCTCACAGTCTAAACAGGATGAGGACGTTTCCGCCAGTCGCTTTGAAGACAATGAGGAGCTGCGGTATTCACTACGATCTATCGAAAAACACGCGCCATGGGTGCGGCACATCTTTATCGTGACCAACGGGCAGATACCGTCTTGGCTGAACCTAGATAACCCACGTGTTTCAGTGGTTACTCACCAGGACATTTTTCAGAACCAGACCCACCTGCCTACGTTCAGTTCTCCTGCCATAGAGACCCACATTCATCGAATCCCAGGACTCTCTCAAAAGTTCATCTACCTCAATGATGATGTCATGTTCGGCAAGGATGTGTGGCCTGATGACTTCTACAGCCACTCTAAAGGTCAAAAGGTGTACCTCACTTGGCCTGTACCAAACTGTGCTGAGGGCTGCCCGGGCTCCTGGATCAAGGACGGCTACTGTGACAAGGCCTGCAACAACTCGGCATGTGATTGGGACGGAGGAGACTGTCAAGGTACTGCAGGCAGCAGTCGTTTTGGAGGAGTGGGCGGTGCTGTGATCGGAGGCGGGCAGCCTTGGCAGTTCGGAGGTGGTCTTGGAGGACTGGGAGGCGTGTCCTTCTGTAACCAAGGCTGCGCTAACTCTTGGTTGGCCGATAAATTCTGTGACCAGGCTTGCAACGTTCTTGCATGTGGGTTTGATGTCGGTGACTGCGGACAAGATAATTTCAACCAATTGCACTGCGTCGTCCTTCGGAGGAACCAAACGCTTTACAGCCTGCCCCAAGGAGAGCTCCGACCGTATTTTAGCTTCTCGGGCCTGGCTAATCGTGTGACCGAGGCACAGGTCGCTGATAACCCAGCTCTCCGTCACACTTCTGTCGCCAACAAATGGAAGACCATccacctgctgctgctgcccgGACACAATGCCACCCAGATCCACTACAACATCACCTTTCAGGGCGCCAATAACCACGACTTCACCGTGACTTTCTCTGTAGCAGTGGACACCCGAGAGCTGCCCAAATCAAACGCATCCAGTCCGGTGCAGGAGAAAAACGAGGAGCCCAAACCGACCGTGGTGACCCCAGAACCGCTGGTcatgtttgaaaatgttccCAAAGAAAAACAAGGCCCGAGAGTTAGAGAGAAAGCCCACGGCGGTGTAGAGTTTGTGCAGATGCCTGCGTTGAATGAATCTCTTTTGCCTGAGGAAGTGATGCTGGAGTTACAGAAGCTGAACGAAAAGCTAATATTAGGTGACATAACTATTAAAGGCTTTAATTTGACCAAAGCAGTGCTGCTGGGACCGTACAAAGACAAAACTGAGCTTTTACTAAACCATAAAGAGCAGGATATGCAAGCAAAGCACTCGATTGAAGACCAGAAGCCTCCAGTAATCAGCCAATATCAGGCTGAAAGAGCGTGTGGGTGAAACAAGCAAAAGAAGACGAGCAAAGAAAACTGTCTAGATTGTGTTGCTCCATCTCTTGTCCCAGTCCAGATTGATGGTGTTACACCAAAGGCTCAATCAAGATTTGGCATAGAGAAACCTCTCACGTCTAAGCTTCTCGGCACCCTGATGGGGAACTTATCTAGGAAGAGAGATTCAGAAAATGAAGCCCACCTTCGTGGGCGGCCGGTGGGTCGTAAACTGCAGTATTATACCTCCAGCTTGGACCGGGGTTTCCTTCCATGGGAGAAGAGGAAGTTCTTTCAGGATCTGCTCGAGGAAGAGGAGCATCTACTAAATGAACTGCGGTATGCAGCTGACGGGACCGCCACTGGCCGCAGGCTGCGGGACACTTTTGCTGATTCTCTCCGCTATGTCAACAGACTCTTGAATGCTCAGTTCGGCTTCACTTCCCGTAAAGTGCCCGCCCACATGCCTCACATGATTGACAGACTCATCATGCAGGAACTACAGGACACCTTCCCTCAGGAGTTTGATAAGACCTCGTCTCACCGTGTGCGTCATTCTGAAGACATGCAGTTTGCCTTTTCTTATTTCTACTTCTTGATGAGTGCGGTGCAGCAGCTCAATATATCTGAAGTGTTTGATGAAATTGACACGGACCACTCTGGCGTGCTCTCTGATCGTGAGATTCGCACGTTGGCCACACGCATCCATGAGCTCCCTTTAAGCCTTCAGGATCTGACCAGTCTGGAGCAGATGCTTATAAACTGCTCAAAGAGTCTTCCGTCCAACCTCACTCAACTCCATGCTGTCAGTCCCACCCAGGAGGCCTATTATGACCCCAGCATGCCGCCCGTCACAAAAGGTTTAGTAGTCCACTGCAAACCCATCACAGAGAGGATCCACAAAGCCTTCAAGGACCAGAATAAATACAAGTTCGAAATTATGGGCGAGGAAGAGATCGCCTTTAAGATGATACGGACCAACGTCTCCCACGTGGTGGGGCAGCTCGACGACATCAGGAAGAACCCTAGGAAGTTTATCTGTCTGAATGACAATATAGACCACAGCCATAAGGACGCCAGCACAGTCAAAGCTGTGCTGAGGGACTTCTACGAGTCCATGTTCCCGTTGCCCTCTCAGTTCGAGCTGCCCAGGGAATACAGAAACCGTTTCCTCCACATGACAGAGCTGCAGGAGTGGCGGATATACAGGGACAAGCTGAAGTTCTGGACCCACTGTGTTCTGGTGACGTTAGTCGTCTTCACTGTCATGTCGTTCTTTGCTGAGCAGCTGATCATGTTGAAACGCCGGCTTTTCCCCAGACGCAGGGTCAGCAAGGATGCCAACCCCGAGCGGGTGTGAGGTTGTTCCTCTATCGGAGGCTGTGTTGTGTGAACGCATGAAGTACCACAGCTGTACTTCTGATAATGTGGTCTGATACGATTGCCCCGTTTGGAGGTGACTGGATGAAGTCGATGGTGGAACTTCGAAAGTGCAGACCTCCTCCACAAAGGGGCATGAGTGAGACACACGGCGGCCCTCGAGGCAAGCGATCTTCTCAGTCCATGATCACACTCCAGGCTGCGTATTGAATGTGAACTGAACTCAATGGCCCAAATTGAGCGCGTTGCCATATTACCTTACATGTCTGATCTgtattaattagaatttttaatttataaggGAATGTCGAGGGTAAGGGTTGTTGTTCTTCTTTCTCTTGCCCTCTTTGTTCTGTCTTTCCTTGCGGTGCCTTTCTTTTCCACATGAACGAAAGCGGTGGATCGATGCGCGGCTGGAACTCTTGGCCTTGCGATTGGCTTTTTGCATTTGTCTTAATCTGTCTCTCACTCTTGCTTATTCCAAAGTGGCATAAATCTCCAGGAGCATATTTAAAACCGAATAGCAATCCTGATACTTGGAAATTTGGCCAAGGATCATCAAAAACGAGccatttccttcttttttctctttttaactgCATGTCCTTTTTGCTTGAAGTCCTTCACTCGATCGTCTCTTAGTGGGACATTAAATACTGATTTTGTCTGAAATTCAGATGCCATCGCCTGTGGCCCTGGTGTGTATTAATTAACTCCTCATCCTcacttgtgtttttaaagggaATCGGGTTTTTTTGGCTTGCTCAAACGTTGCAactactgaccccaaaccttcgCATAAAGACGTTTTGGGATGAATGTcccgtttatttttatttattacgtTAGAAAGGCATAATTGTGATGTGCAAGGTTATCTTTGCTTTGGAAAATATGTGTTGCTAAAATTGTCAAAATACACTTATTTAGGTCTTTCAATTACACGGACAATTTATCACTTTTGTGTCAATTTTAAATTCAGCCAGGTGCCTAATTTGATAATGAAATAAGAACATAATCTGAATGCCGAAAGTGTATGATGAAACGGCCaaatatgtcattaaaaaatctttcattACTGCA

Function

symbol description
gnptab Enables UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity. Involved in N-glycan processing to lysosome. Acts upstream of or within bone development; chondrocyte development; and embryonic viscerocranium morphogenesis. Predicted to be located in Golgi membrane. Predicted to be active in Golgi apparatus. Used to study mucolipidosis II alpha/beta. Human ortholog(s) of this gene implicated in mucolipidosis II alpha/beta and mucolipidosis III alpha/beta. Orthologous to human GNPTAB (N-acetylglucosamine-1-phosphate transferase subunits alpha and beta).

NR:

description
N-acetylglucosamine-1-phosphotransferase subunits alpha/beta-like

GO:

id name namespace
GO:0002063 chondrocyte development biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0000139 Golgi membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0003976 UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity molecular_function

KEGG:

id description
K08239 GNPTAB; UDP-N-acetylglucosamine-lysosomal-enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236749.1 True 4971 mRNA 0.50 22 9024477 9041856

Neighbor

gene id symbol gene type direction distance location
cwf19l1 cwf19l1,LOC107695878,LOC107725658,LOC107744920,LOC107664857 coding upstream 9221 9010162 ~ 9015256 (+)
itfg2 itfg2 coding upstream 53883 8962606 ~ 8970594 (+)
recql recql,LOC107695875,LOC107590167,LOC107725624,LOC107587911,LOC107744919,LOC107664885 coding upstream 63244 8953947 ~ 8961233 (+)
nup37 nup37,LOC107590136,LOC107695872,LOC107664874,LOC107744917 coding upstream 158559 8855404 ~ 8865918 (+)
pmch pmch,LOC107659836,LOC107591230 coding upstream 181227 8841744 ~ 8843250 (+)
LOC122343441 LOC107553872,LOC107593900 coding downstream 275724 9317580 ~ 9323622 (+)
LOC122343440 NA coding downstream 283044 9324900 ~ 9333048 (+)
ncaph2 ncaph2,LOC107725678,LOC107590292,LOC107732965,LOC107553878 coding downstream 314111 9355967 ~ 9373818 (+)
slc26a4 slc26a4,LOC107664887,LOC107695858,LOC107553866,LOC107733015 coding downstream 503829 9545685 ~ 9554560 (+)
slc26a3.2 LOC107695870,LOC107591024,LOC107725685,LOC107695899,LOC107725684,LOC107591277 coding downstream 514973 9556829 ~ 9576961 (+)
G27301 NA non-coding upstream 71355 8952922 ~ 8953122 (+)
G27162 NA non-coding upstream 271628 8752438 ~ 8752849 (+)
G27121 NA non-coding upstream 519381 8471675 ~ 8505096 (+)
LOC122343529 NA non-coding upstream 647168 8374654 ~ 8377309 (+)
G27084 NA non-coding upstream 693175 8278559 ~ 8331302 (+)
G27345 NA non-coding downstream 12165 9054021 ~ 9057297 (+)
G27347 LOC107590965,LOC107695883 non-coding downstream 16012 9057868 ~ 9058292 (+)
G27352 NA non-coding downstream 27075 9068931 ~ 9076136 (+)
LOC122342713 NA non-coding downstream 36162 9078018 ~ 9081866 (+)
LOC122343257 NA non-coding downstream 46899 9088755 ~ 9098978 (+)
washc3 ccdc53,LOC107695862,LOC107590199,LOC107596601,LOC107744922,LOC107664856 other upstream 6144 9015841 ~ 9018333 (+)
ascl1a ascl1a,ascl1,LOC107590149,LOC107664850,LOC107596391,LOC107744950,LOC106576285 other upstream 134301 8874717 ~ 8890176 (+)
etnk1 etnk1,LOC107725541,LOC107659837,LOC107694683,LOC107590048,LOC107744908 other upstream 476475 8533816 ~ 8548002 (+)
spx spx,LOC107589995,LOC107744902,LOC107694690,LOC107596170,LOC107725633 other upstream 532539 8487911 ~ 8491938 (+)
stmp1 NA other upstream 540646 8482890 ~ 8483831 (+)
G27360 anks1b other downstream 121291 9163147 ~ 9227212 (+)
cfap54 cfap54,LOC107695893 other downstream 339686 9381542 ~ 9395757 (+)
wnt7ba wnt7ba,wnt7b,LOC107591249,LOC107695867,LOC107725526,LOC107732964,LOC107664847,LOC103028473 other downstream 462224 9504080 ~ 9522033 (+)
G27508 LOC107695901,LOC107725636,LOC107553882 other downstream 535459 9577315 ~ 9578574 (+)
G27490 NA other downstream 545463 9587319 ~ 9590318 (+)

Expression


Co-expression Network