chpt1 (chpt1,LOC107590206,LOC107725616,LOC107695881,LOC107744925,LOC107664854,LOC107588513,LOC107085961)


Basic Information

Item Value
gene id chpt1
gene name chpt1,LOC107590206,LOC107725616,LOC107695881,LOC107744925,LOC107664854,LOC107588513,LOC107085961
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 9042013 ~ 9048831 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236750.1
GACCGCAGTTTCCTGCGTCTCTCCGTTTATCTGCTCTGAACTATTAGGAACGGAGGAGACCGTCGGTTCCGCTCATCGAAAAATGACTCTCCACACGTAACCGCCGCGTGCTAATGCCTTCTTCCAAGCGGACACCTGGGAACTCGGACCAAACCGTCGCACCGACCCTGCCGAAAGAGCGATCATAATGCCTCAGTGCGCGTGTCCGGAGCCGCTGTCAGCTGTCCAGCTCAAGCGCCTGGAGGAGCACAAGTACAGCGCGGCCGGTCGCTCTCTCTTCGAGCCGCCCTGCCAGATATACTGGAACTGGCTGGTCCAGCAGGTCCCGACGTGGGTCGCGCCGAACACGCTGACCATCACCGGGCTCCTCATTAACATATTAACGACGGTCATTCTCGTGTATTACAGTCCCACGGCCACCGAGGAGGCTCCAGGTTGGGCCTTCATTCTCAGCGCCTTAGGTCTCTTCATCTACCAATCACTGGACGCCATCGATGGAAAGCAGGCCAGGCGGACCAATAGCAGCTCAGCTCTTGGGGAGCTCTTTGACCATGGCTGTGACGCTGTCTCTACAGTGTTTGTTGCCGTGGGAACGTGTATATCCTGTGGGATCGGCGCTTACTCTAACTGGATGTTTTTTTGTGGCTTCGTGGGCATGTTCATGTTTTTCTGCGCACACTGGCAGACATACGTGTCCGGGACACTTCGCTTCGGATTGGTTGACGTGACAGAAGTCCAGATTGCTATTATTATCATGTATTTGATGACAGCTTTTGGAGGAGTCAGTCTTTGGGAGACGAGGGTCCCTGTTCTTGGTGTCAATTTGCAAACCTTTCCAATTCTCGGCATTATCGGTGGCTTTCTGTATTCAACCTATAACTACTTCTACGTCATCATGAACGGCGGAGTGGGCAAGAACGGCTCAACCGTTGCAGACACCAGTGTATTAACTCCCGGTCTACACATCGGCCTAGTCCTCTCTCTGGCCTTCATCATCTTTAAAAAGTCCTCGAGTCAGGTTTTCGAGCACCATCCTTGCCTTTACGTCCTTACATTTGGCATGGTGATCGCCAAGATCTCGAATAAGCTAGTGGTGGCCCACATGACCAAGAGTGAGCTTCATCTTCCTGACACGGCCTTCATTGGTCCCGGACTCCTTTTTCTGAATCAGTATTTCAACAGCTACATCGATGAACACATCGTGCTTTGGATCGCCATGGTGCTGTCACTGGCGGATCTGCTGCGTTACTGCACAGGCCTGTGCCTGCAAATCGCCTCCCATCTCCGAATCCGGGTTTTCAGTATCACCCCACAGGGCCACGCTCATAGAGACTGACAATTTGCCCGGCGGGAGGAGGAAGCGGGATCTAAGGATGAAGACATTGTCCCGCTTCTCAAACTAGAGCAGGAGAGCCCCAGCAACCAAAACCGCAACGGCCTTGACAGTGTGACCATCACAGATTAACAGAACTGATTGTTTTGCCAGGTTTGACCAGACCAGCTCGTATTGTTTTCTAACCACACTACTGTACACTAGAATATATCActggatgaaaagaaagagtttAGTTCAAAATGTGGCCTTGGGGATCAGAGGGCGGCCCTTGCCTCGAAGAGGTTCAGTCCGTGCAGGAACGTATTAGagatactttttgttttgttttttcccctcaaggGAAAATTGGTGGGAAAATCGAACGTATTTGAATCATCCAAAAGCATTGAATAACTTAAATCAGAATaagaatcaaaaaaataatggaGGGAACATCACGTTTAACACAGTAGATGTGTACttagttttttggggggttgaTCATGTTTGtcgatttttaacaaaaaaaagggaaGCTACAACTGCAGTTTGGGCATCTGTGgctgttttttaaaaccaaGTCCATTTTCTACATCGTAATATCTATTATTTCATTCAGTCCCATTTGTATGTCTGATCTCGACACACCCCGACATCGTCGCCAAACTGCCAAAAATAGTTTAGAACCTTTTATACCGTTCAGAATTTTtaatgttgattaaaaaaaaaaaagcagctattTGTAGATCACGTGACACTTTATAGAAGTAAATAAGCTCCAGAAAAGAAAACTGCCCAAACAGCCATTGTAGCTTTACGTGAACCTTTTGTGATTGTCCAGTGATTACggtgtatttatttcaataatctGACTGAATTTAGTGTGAAATTAAGTCAAgcctgttaaaaacaaaacataattgaaAGAACTTAATTGTCAAGGATTGTGGCTGTGTGCTCAAAACAGACTCATCTCTCCACCCCCTCGCTAGTCACCCAACCCCAGTTTGCTCAGACTTCCTGGTTGTATGTTTCACTTCCTAGAGCTTCGACTGAGCACAAACAGAGTTACTGGGCATTGTCTTTAGCTCTGTTTTGGAGGATTTTGGGGGGTGTTGATCTTCTGTGCCTGTTCTATGATGCACTCTCTGCCTGCTTAGAATCATCTCCTCCCAAAGggctaataaaaacaataaactttTGTGTGATTTAATAGA

Function

symbol description
chpt1 Predicted to enable diacylglycerol cholinephosphotransferase activity. Predicted to act upstream of or within phospholipid biosynthetic process. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus and endoplasmic reticulum membrane. Is expressed in several structures, including digestive system; notochord; polster; tegmentum; and yolk syncytial layer. Orthologous to human CHPT1 (choline phosphotransferase 1).

NR:

description
PREDICTED: cholinephosphotransferase 1

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004142 diacylglycerol cholinephosphotransferase activity molecular_function

KEGG:

id description
K00994 CHPT1, CPT1; diacylglycerol cholinephosphotransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236750.1 True 2532 mRNA 0.47 8 9042013 9048831

Neighbor

gene id symbol gene type direction distance location
dram1 LOC107725538,LOC107591237,LOC107695863,LOC107664855,LOC107596679,LOC107744952 coding downstream 18581 9018330 ~ 9023432 (-)
nrip2 nrip2,LOC107725649,LOC107695877,LOC107588270,LOC107744921,LOC107664860,LOC107590947 coding downstream 41555 8977878 ~ 9000458 (-)
pah pah,LOC107695873,LOC107744915 coding downstream 156997 8874712 ~ 8885016 (-)
LOC122343226 parpbp,LOC107744914,LOC107659825,LOC107590919,LOC107593393,LOC107664835 coding downstream 184963 8843207 ~ 8857050 (-)
LOC122343383 LOC107659831,LOC107744910,LOC107664834 coding downstream 238173 8780290 ~ 8803840 (-)
mybpc1 mybpc1,LOC107695883 coding upstream 690 9049521 ~ 9082049 (-)
spi2 LOC107590970,LOC107695852,LOC107725518,LOC108233215 coding upstream 37713 9086544 ~ 9088361 (-)
spic spic,LOC107695854,LOC107725559,LOC107590981,LOC107596776,LOC107744943,LOC107664892 coding upstream 40759 9089590 ~ 9092106 (-)
dnajb9b LOC107725537,LOC107590229,LOC107596855,LOC107664893,LOC107695887,LOC107744927 coding upstream 49074 9097905 ~ 9100722 (-)
avpr2l avpr2l,LOC107725532,LOC107695886,LOC107744926,LOC107590222,LOC107664848,LOC107588672 coding upstream 54745 9103576 ~ 9106985 (-)
G27425 NA non-coding downstream 17936 9023877 ~ 9024077 (-)
G27417 NA non-coding downstream 37790 9003923 ~ 9004223 (-)
G27306 LOC107725624,LOC107744919,LOC107590167,LOC107587911,LOC107664885,LOC107695875 non-coding downstream 80580 8960446 ~ 8961433 (-)
G27279 NA non-coding downstream 154060 8887186 ~ 8887953 (-)
G27253 NA non-coding downstream 227001 8809767 ~ 8815012 (-)
LOC122343442 NA non-coding upstream 281176 9330007 ~ 9341739 (-)
G27469 NA non-coding upstream 449885 9498716 ~ 9504000 (-)
G27532 NA non-coding upstream 496377 9545208 ~ 9545421 (-)
LOC122342618 NA non-coding upstream 498808 9547639 ~ 9552161 (-)
G27540 LOC107732962,LOC107553866,LOC107725684,LOC107695899 non-coding upstream 516616 9565447 ~ 9568297 (-)
klhl42 klhl42 other downstream 32709 9004260 ~ 9009304 (-)
LOC122343470 LOC107593478,LOC107664836,LOC107744937,LOC108435459,LOC108279443 other downstream 100610 8892019 ~ 8941403 (-)
th2 pah,th2,LOC107590157,LOC107664872,LOC107587609,LOC107744916,LOC107695848,LOC108437952 other downstream 167415 8870215 ~ 8874598 (-)
slc25a3a slc25a3a,slc25a3,LOC107744906,LOC107586622,LOC108437945,LOC105897470,LOC108279629,LOC107694680,LOC107593070 other downstream 524430 8513630 ~ 8517583 (-)
G27232 LOC107589947,LOC107725677,LOC107659846,LOC107586091,LOC107694692 other downstream 573985 8460506 ~ 8468028 (-)
uhrf1bp1l uhrf1bp1l,LOC107695888,LOC107744929,LOC107664877,LOC107589017 other upstream 223141 9271972 ~ 9300179 (-)
zgc:193726 NA other upstream 1306880 10355711 ~ 10363566 (-)
cacna2d4a cacna2d4a,cacna2d4,LOC107694142,LOC107738821 other upstream 1436091 10484922 ~ 10522249 (-)
dcp1b dcp1b,LOC107590561,LOC107738825,LOC107733007,LOC107589040,LOC107699046,LOC107694173 other upstream 1475700 10524531 ~ 10533543 (-)
ppfia2 ppfia2,LOC107694182,LOC107755902,LOC107680027 other upstream 2365889 11414720 ~ 11573766 (-)

Expression


Co-expression Network