st8sia1 (st8sia1,LOC107748471,LOC107755164,LOC107567669)


Basic Information

Item Value
gene id st8sia1
gene name st8sia1,LOC107748471,LOC107755164,LOC107567669
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13484786 ~ 13494427 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236773.1
gtGTACGTTTCGCGTAGCATTAGCAGCCGACTTAGCTTAAACGCGCAAACAGTTATACTCCGTTTATTAAACGGCCGTCGTCGCGCGACCGTGTTAACCGGCAGGGGGCAGCACCGCAACAAATAACGAAGGCAATGATGCGTACTAAAGCGTTCACAAACTGAGCTTTGTCTCTCACTTATTCGGAAGATGACATACGAGACGGTCAGGTTGGGAGGGAAGGCCCTAAAATCCCGTGAGGTCCCTCTCGCTGGGCCAGACGGAACCGATGAAGGCGACCGCATCCTCCGCATCCCATAATAATAAGCCGGCCGTGATTGGGAGCTCGTTCGTCGGCGAACGGAATGAGGAGGAAATTGATGCGCGCCTGAAAATCTGACACGGGCACGCCGCCGTTGGCCGTCTCGCGCGCCGCGTAATGGAAATAGCTGGATAACGGTATTCCGGcggctttttttgtttgcgcTTCTAATGGGAGCGACGCCGAGGTAAACGGGTCGGCCCGCGAGCacgtgtttttttgtttttttacagccaGGCATTCGCCCGATCGGATCGGCGGGATGGCGTCTTTGAGGTGTCACCGGAGCAAGTACATGTGGGCCACTCTGGGCGTGCTGGCGTTGTTGTGGCTCTACATCTTCCCCGTGTACAGGATCCCCAGCGACAAAGAAATGGTGGACGAGGTTCTGCGGCAGGGGCAGACGTGGAGCAGAAACAAGACCGGGGTGGATCTGTACAGGAAACTGCTGACAGAATGCTGTGACCCAAAGAGAATGTTTGCTGTCACTAAGGAGAACTCGCCGATAGGCAAGGTTCTGTGGTACGACGGGGAGATCTACCATTATCACACGGTCACCAATGAAACCTACCCCATCTTTGTTCAGGATACACCATTGCAGCTTCCTTTGAAGACATGTTCAGTTGTGGGAAATGGAGGGGTCCTGAAACACAGCGGCTGTGGAAAAGAAATTGACCAAGCTGACTTTATCATGAGATGTAACCTTCCTCCTCTATCCAAAGAGTACACCACTGATGTTGGTACCAGAACACACCTGGTGAGCGCGAATCCTAGCATTATTGAAAAGAACTTCCAGAACCTGCTATGGTCCCGCAAATCCTTTGTAGAGAGTATGAAGGCATATGGCACCAGCTACATCTACATACCAGCGTTCTCCATGAAGCCCGGCACTGACCCCTCCCTGAGGGCATACCACGCCCTTGCAGACTCCGCCTCCAACCAGACGGTCCTCTTCGCCAACCCAGACTTCCTTAAAAACGTCGGCCGATTCTGGAAAAACCACGGCGTCCACGGCAAGCGGCTGTCCACGGGGCTGTTCCTCGTGAGCCTTGCCCTCGGCTTGTGCGAAGAGGTGACCGCTTACGGTTTCTGGCCATTTTCGGTGGGACTGGATGAGCGGCCGGTCAGCCACCATTATTATGACAACATTCTCCCGTCCTCGAGATTTCACGCCATGCCTGAGGAATTCCTGCAGCTCTGGCACTTGCATAAGAGCGGCACGCTGCGTATGCGGGTCGGCGATTGTACGAAAGAAGGACAGGAACCTAAGAGGGAAAAATAAGTGGATGCGTTTCCCCCACCTATCCCCACAGGAACAGGACAGATCTCCTGTGATTAGCATGAGAATGCTGTGGGTAATGAGGTGATGCCTCACCCCCAAAGCTAGGCCTCTCTTTGGTGTCTATATGCTTGAACCTCAACTGCTACCAACACCCCCCACCACCTTCTTGTTGCCAAAGGACAGTTGTAAAGACTTGCATGTGTACCCATCCTGCGCTCACTGGAAGCTTGTTGTGTCCGTTTGTTGTCCCGGGGTGATGAGGGGCTCAGGTGTCATGTGACCTATTTAAACTGCATCCACCAGCAGTTGGACCCCTGTAACCAAGGACTGTTTGTTCACTTAATATAAAGGGAGAACGGGGGAGGTGCTGAGTCAAACAATGTCTTAAGAACTCTAAATGGGAACTTGGGAGCAAGGCTTTGACCATTTAGcgtattgtagtttttttttcttaaacactgATTCTCTGGAGTTTCGAGGTAATGGAACAACGAATAATGAGAAAATCTTACTCACAGTGTTCGCTTAAATACAAATCAGTGTACAAATACAGGTTTAGCCTGGAAAAGGGAAGTTGGGAATCGAATGTACAGCCAAAGTATAAAAACCCGTTTCAAAGATTTGAGACCGGTTTAAAGTGAAGGCTGCAGTTCACGTATTATTGCGAGTATATTTccaattgtatttatttttaacatttcagtgAACCACCTTGTCGTTCTAGATCAGTCTTACGCGTTTAGTGTTTGACGAGATTAGAGTGAAATCATGGGTGGAGAGACCACATCCAGTTGGAAGATTTCCACTAGCTGGATGGAGGCCCAAATTCTGTTGAAGAGATAGTGAATTGTTGCGTGCCCTTGGGAGGAAAAGTGTTACAGAGTTTGCAGTGACTACTGTGGCAGCATATTTTATTAGTGTGTTACTTGTATGTGTTTGAATTCAATCATTTGATGTCATGAAGTGGTGTAAAAATCCTTTATCACATGGTGGAAGGGTCACCAATCATATagtaactgctttttttttttgcctgctaAGGTGCTGGACACCTGGTCCGGAACATGTAAATACTCAATTATGGGTTCTCTGAATGTATTGACAGCCATTTTGGTAGtctgcccagtaatttgtttcctctacttatttttttgttgttgttgttaaactACACACAGGGAATTAGGTTTAAATTTAGGTGCTAGCTGTAACACATGCACTCCAGTTTAGTCTTAATATATCATCACTGATGGACAGTTTTATTAGGTTTGACTGGTAGAAGGATGTACTATTACACTGATTTTAAGCCAGAGACCTCAGTATTTatagggttagttcaccccaaaaggATAATTGTCATCAACTACTTACCCCATGTCATGACAAACCCATTTATTTTATCGTTGAAAGACAATTGAAGATATTTCAATGAAACCTGAGAGTTTTGCTCACCACTGAAAATTCAAAGTTTCAAAAAGAAGTAGATTTAAGATATACATGAAAAATTAATCCACACGTGTGCATGGGAGCAACTCAAATATGGCAAATGGAAGCCCAACCATACTTTCTTGACGCCTGATAGCGAACCTCATTGGTTTTATTGAAATGGGCTTTCAATGGAGGCCCATAAATCTCTCAGATTTGTCTTAcggatttggaatgacatgagagtgagtacaacatgacagaattttctacTTCTAGGTGAACTACAGAGTTGCCTTTAAATGTGTCTGCCGTTGTCATTTAAAGCAGGTGTGTTAGCATTCAGGTAGCTAGCTATAAGACAGCTTAACTAACTTGCTTCAAAAGATTCTCCTACGCTATGGCAACACCGAGATTGTGTACTTGAAACTGATTGAAATGAGTTCTGACATTTTTAGTTAAACGTTGttctgtgatatatatataattagtttttgcATCAAGGTTGGAAAGCTGTACTATGAGCTATGTAGTtggtgaatctcacaaaatgCATAACCAGGTCACGTTTCACCccaattgaaagaaaaaaaaaaaaagacagttaaCCCCTTTTTACTGCATGTTGTCGTTatcataatgcatttaaaaaagtgcCATAAATGAAATGCAGTACAACAAACAATGGCGCATAAACGATCGTGCTTAATTCCGTTAGTggtcatggaaaaaaaaaaaatggggtgAACTATGACCGGGACTTGTTCTTAGCAGGTGTTTTGAGACTCGCTCTGATAGCAAAGGAAATGTGCGCACTCGTTTGAATATCTCTAGAGATTCCCATTACCATATTTTCACACTTTAAGCCAATGAGTGCCTTTATCAGTATTAAAAAGGCTTTGGGCTTTATTTCACCAAGGACAAGTATTTTAACCAAATCTAAGATTCATCCCCCTCCAACTCAGAAGTATATAACGTCACAGAAtagtttttaagaattttcaACCAAGGCTGATGTGTAGAAATGTGGAAGgacttattaatttaataacttaCTATGATTTACGATAAGCGAATGGATGCGAGTTCCAAAATATGCTAGCAGACGGTTGTAGAAGGACCAACGTACATTAACGTAATTTGCTTTTACATTGCTTGATTGCCAGAAAACCGCAACTTTAACATACATAGCTGGGGAAAGTGTGAAATGCTGGAGCtggtgattctttttttttttcctttgcacctttttgtgtcGTTCAGTATTGTGAATGAGTGAGGTAGTAGTTTGTAAGTAGGCATGCACGACTGTGATATGTAATTGGTTTTTGAAACCGATTTTGAGTGAGAaactcacaaacaaacaattatgtCTTTTACGTTCCGCCCCTTTGAGCCATAAAAGGGTGTTTGCCCTGCTGAAACTGAGCTTACCTCAACTGTACTATTCACTGTTAAATGCATCGATGAAGCTCACTGGAGCTTGGAGCCTAGTACGTTTTACTTCACTAAGCTGTAAATGTGTCCTATCATGTCAAACTTTTTGGCTCAAGCGGTTGGTGTTTGTACTTGAGCATGTTACTAACAGCAAACAGGAACCGAGCTGGACGTTGTTTACGTGCCACCTGGGTTTTGCCAATATTGAAAATGTGATAAGAACAAAAGCAAACACTGCTTTCAAACAATAAAGACGTCCTGTCAACTCA

Function

symbol description
st8sia1 Predicted to enable alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity. Predicted to be involved in N-glycan processing; oligosaccharide metabolic process; and protein glycosylation. Predicted to be located in Golgi apparatus and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including corpuscles of Stannius; forebrain neural plate; kidney; nervous system; and unfertilized egg. Orthologous to human ST8SIA1 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1).

NR:

description
PREDICTED: alpha-N-acetylneuraminide alpha-2,8-sialyltransferase

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0097503 sialylation biological_process
GO:0030173 integral component of Golgi membrane cellular_component
GO:0003828 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity molecular_function

KEGG:

id description
K03371 SIAT8A; alpha-N-acetyl-neuraminate alpha-2,8-sialyltransferase (sialyltransferase 8A)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236773.1 True 4714 mRNA 0.44 5 13484786 13494427

Neighbor

gene id symbol gene type direction distance location
si:ch211-244b2.4 NA coding downstream 14437 13466028 ~ 13470349 (-)
si:ch211-244b2.3 NA coding downstream 19113 13461043 ~ 13465673 (-)
usp44 usp44,LOC107755158,LOC107597009,LOC107667716,LOC107748469,LOC107567668,LOC107689228 coding downstream 44683 13433309 ~ 13440103 (-)
fgd6 fgd6,LOC107755156,LOC107689226,LOC107667720,LOC107748482,LOC107567667,LOC107597032 coding downstream 81570 13384588 ~ 13403216 (-)
nr2c1 nr2c1,LOC107689225,LOC107755159 coding downstream 100340 13376174 ~ 13384446 (-)
b4galnt3a b4galnt3a,LOC107689248,LOC107689733,LOC107748486,LOC107584744 coding upstream 8509 13502936 ~ 13513404 (-)
slc6a1l LOC107597007,LOC107584717,LOC107689715,LOC107748475,LOC107689236,LOC108427058,LOC105916091 coding upstream 141186 13635613 ~ 13648049 (-)
LOC122343493 LOC107726837,LOC107748473,LOC107689714,LOC107584715 coding upstream 158098 13652525 ~ 13665137 (-)
pyroxd1 pyroxd1,ryroxd1,LOC107597005,LOC107584714,LOC107689253,LOC107689716 coding upstream 179844 13674271 ~ 13679088 (-)
LOC122343316 NA coding upstream 188798 13683225 ~ 13687640 (-)
LOC122342564 NA non-coding downstream 140529 13343726 ~ 13344257 (-)
G28377 NA non-coding downstream 165038 13311873 ~ 13319748 (-)
G28359 NA non-coding downstream 232752 13250651 ~ 13252034 (-)
G28353 NA non-coding downstream 239398 13242506 ~ 13245388 (-)
G28350 NA non-coding downstream 255467 13229094 ~ 13229319 (-)
G28434 iqsec3,LOC107689235,LOC106609634,LOC107689713 non-coding upstream 115789 13610216 ~ 13612771 (-)
G28545 LOC107689243,LOC107689721,LOC107726844,LOC107569223,LOC107566846 non-coding upstream 326269 13820696 ~ 13827052 (-)
G28564 NA non-coding upstream 372350 13866777 ~ 13867298 (-)
G28544 NA non-coding upstream 374995 13869422 ~ 13870614 (-)
G28568 NA non-coding upstream 385604 13880031 ~ 13880847 (-)
G28397 vezt,metap2,metap2a,LOC107755144,LOC107689227,LOC107597031,LOC107667718,LOC107755160,LOC107689230,LOC107597011 other downstream 52083 13411624 ~ 13432703 (-)
tmcc3 tmcc3,LOC107689246,LOC107667715 other downstream 122848 13316932 ~ 13361938 (-)
tmem110l tmem110l,LOC107597025,LOC107748459,LOC107675974,LOC107555827,LOC107666935 other downstream 297896 13176961 ~ 13186890 (-)
cpm cpm,LOC107728505,LOC107710685,LOC107666948,LOC107669712 other downstream 995605 12465612 ~ 12489181 (-)
G28093 slc35e3,LOC107710682,LOC107556774,LOC107737854 other downstream 1469019 12014631 ~ 12015767 (-)
LOC122343399 LOC107726825,LOC107689735,LOC107584742 other upstream 198044 13692471 ~ 13698715 (-)
LOC122343280 NA other upstream 321147 13815574 ~ 13831851 (-)
G28575 alg10,LOC107726832,LOC107689747,LOC107721156,LOC107666210,LOC107600015,LOC107569225 other upstream 480930 13975357 ~ 13980559 (-)
cerk cerk,LOC107710741,LOC107689729,LOC107552286,LOC107600034,LOC107721152 other upstream 661065 14155492 ~ 14176742 (-)
LOC122342862 celsr1a,LOC107666207,LOC107710744,LOC107569230,LOC107721151,LOC107600014,LOC107689740 other upstream 1193446 14687873 ~ 14704622 (-)

Expression


Co-expression Network