tnni1d (tnni1d,LOC107597014,LOC108280151,LOC103374597)


Basic Information

Item Value
gene id tnni1d
gene name tnni1d,LOC107597014,LOC108280151,LOC103374597
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 13497740 ~ 13501524 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236774.1
GAGCTTTTTTTGTAAGACGTCGACGCACGAAGGAGCCTCAGCAGCAACTAAAACGAATTTTAccgtatgcatttttttattttttgtgcactAATGAATGAAGTCATCAGTAGCTTGCCGctactaataatttaaaaagtaccaCAGCGACAAACAGCACAAGAAAACACCTTAGAATTGAACACACTCCCTACTGATAACAGCAATATTATATGGAAGACAGATAACTATATGGGACAACATCCTCACAATTTACTCTATGATGTTTTATCATTTACCTCAGACATTGTTTTCCTCTTCTGATCGTGACTCAAGAGCACAGGCTTGCTATCTATACGTGGGCCGAGACCCGTTGAGGAACTATTTTAAGAGGCTATATCCCGCATGTGAACGAGTCAATATTTCGCGAGTACAATGTTTGCGTTTACGAACTCAAGCCCAAGCCAGAGAAAAGCCATCGTGCGTTCTTATGTATTGCTGTGTCGTCACAGGTTTGCTGTTGGTAGTATTTCATTTGTAGAACACTGCCAAGCCATTCCTGGCGACAGACACTATATCTGCCAGCCAGTGGTGGCTGGACTATAAAATCCCTTTGTCTCAACACCCTGTTGTTCTGCCTCTTGTCCGCGACCATCAACCAGGTTTCATCTAAAATCTTTGGTTGAAACAATCTTTTTAGTAGTTCAGCAAGACGGCAAAATGGGCGATCCGATACGAAGGCCTGGAAATCCAAAAGTGGACAACAAACCCAAGTCGAAGATTTCAGCATCTCGAAAACTTTCTTTGAAGATAATGCTTCTGAACAGAGCCATAGAGGAtctggagaaagaaaaacaagacaggGAAGAAGAGAAAAATCGCTACCTCACAGAAAAACACCCTCCTTTGCAGATTTCTGGGCTCTCTCTGGCAGAGTTACAGAATCTGTGTAAGCAACTCTATTCCAAAATAGACGTAGTGGATGAAGAGAGGTACGACTATGAGGATAAAgtcaaaaagcacaacaaagatatcaatGAGCTTAAGTTGAAAGTTCAGGATTTAGGCGGGAAGTTCAAGAAACCTGCTCTGAGGAAGGTGCGTGTGTCTGCCGATGAGATGATGAGGGCATTGCTGGGCTCCAAACACAAAGGCTCCATGGACCTCCGTGCAAATCTGAAGTCAGTCAAAAAGGAGGACATTAAGCAAGAAAAGGTCTTGACCTCTGAGGTAGGTGATTGGCGTAAGAATGTGGAAGCCATGTCTGGAATGGAGGGAAGAAAGAAGATGTTTGACGCCGCTGGGGGAGGCCAGTAAACCCCTTTGTTGAACCGACCTGACCTTCTGGCTGGTCTTCACCGAGAAGATATAAAACGGAAAGAATGAAGCTAAAGAGTTTTGGCTTTGACCTTTCTGAGCTGCTGTTTTTCCGAGCCAACTCATAGTAACTGCTAAGTAATAAGTCGACATAGGAAAATATAAATCCTGCGATTATCTTCTCACCTTTTAGTTGATTTAAAGCTGAATTATGTTCTGGAACACATACTATTGACGCTGCTCACATTCTTATCCATAAAAGTAAATAAGGGGCTGTCAAGATCTAAAAAGTCCCATCAAAGTACATCCCATGATCTAAatttcaagtcttctgaagctaaGAATTTTTGTCATGATGCTTTCATTTGGAGTTTGACGACCCCTAACCAAAATGTGTCTTCATTCTGTGGAAAAATAATATGTGAatgatgttttttcttaaaaatataatttgacagATCTCCATGAAAGACTAAAGTGCAGACAAAGACATAAGATAGGCCTTAGTAATTTTTAGGTGTTTTTGAGACTTCCGTCTGCagccatttcatttcattataaatgtatcagataatattaatagtaataataataaaaaatggcaTATGTTTGACTGggatatatgtatgtttttgtgtgttacaATTAAGTCTTAAATTGACATTAAAAGTTACATTATTAAGCCAAAATAA
>XM_043236775.1
TGTTAGCTAGCAGCgataaaattaaaagtagatGGAACTGACCGTATGAAACCGTTTTCAACGTGTCAGCCTAAgtcaatttttaaattaaaaatgttcaacaTTGTAAGAATTCGCATGCATTGTTTGTGATTCTGTATGAGCTTTTTTTGTAAGACGTCGACGCACGAAGGAGCCTCAGCAGCAACTAAAACGAATTTTAccgtatgcatttttttattttttgtgcactAATGAATGAAGTCATCAGTAGCTTGCCGctactaataatttaaaaagtaccaCAGCGACAAACAGCACAAGAAAACACCTTAGAATTGAACACACTCCCTACTGATAACAGCAATATTATATGGAAGACAGATAACTATATGGGACAACATCCTCACAATTTACTCTATGATGTTTTATCATTTACCTCAGACATTGTTTTCCTCTTCTGATCGTGACTCAAGAGCACAGGCTTGCTATCTATACGTGGGCCGAGACCCGTTGAGGAACTATTTTAAGAGGCTATATCCCGCATGTGAACGAGTCAATATTTCGCGAGTACAATGTTTGCGTTTACGAACTCAAGCCCAAGCCAGAGAAAAGCCATCGTGCGTTCTTATGTATTGCTGTGTCGTCACAGGTTTGCTGTTGGTAGTATTTCATTTGTAGAACACTGCCAAGCCATTCCTGGCGACAGACACTATATCTGCCAGCCAGTGGTGGCTGGACTATAAAATCCCTTTGTCTCAACACCCTGTTGTTCTGCCTCTTGTCCGCGACCATCAACCAGTAGTTCAGCAAGACGGCAAAATGGGCGATCCGATACGAAGGCCTGGAAATCCAAAAGTGGACAACAAACCCAAGTCGAAGATTTCAGCATCTCGAAAACTTTCTTTGAAGATAATGCTTCTGAACAGAGCCATAGAGGAtctggagaaagaaaaacaagacaggGAAGAAGAGAAAAATCGCTACCTCACAGAAAAACACCCTCCTTTGCAGATTTCTGGGCTCTCTCTGGCAGAGTTACAGAATCTGTGTAAGCAACTCTATTCCAAAATAGACGTAGTGGATGAAGAGAGGTACGACTATGAGGATAAAgtcaaaaagcacaacaaagatatcaatGAGCTTAAGTTGAAAGTTCAGGATTTAGGCGGGAAGTTCAAGAAACCTGCTCTGAGGAAGGTGCGTGTGTCTGCCGATGAGATGATGAGGGCATTGCTGGGCTCCAAACACAAAGGCTCCATGGACCTCCGTGCAAATCTGAAGTCAGTCAAAAAGGAGGACATTAAGCAAGAAAAGGTCTTGACCTCTGAGGTAGGTGATTGGCGTAAGAATGTGGAAGCCATGTCTGGAATGGAGGGAAGAAAGAAGATGTTTGACGCCGCTGGGGGAGGCCAGTAAACCCCTTTGTTGAACCGACCTGACCTTCTGGCTGGTCTTCACCGAGAAGATATAAAACGGAAAGAATGAAGCTAAAGAGTTTTGGCTTTGACCTTTCTGAGCTGCTGTTTTTCCGAGCCAACTCATAGTAACTGCTAAGTAATAAGTCGACATAGGAAAATATAAATCCTGCGATTATCTTCTCACCTTTTAGTTGATTTAAAGCTGAATTATGTTCTGGAACACATACTATTGACGCTGCTCACATTCTTATCCATAAAAGTAAATAAGGGGCTGTCAAGATCTAAAAAGTCCCATCAAAGTACATCCCATGATCTAAatttcaagtcttctgaagctaaGAATTTTTGTCATGATGCTTTCATTTGGAGTTTGACGACCCCTAACCAAAATGTGTCTTCATTCTGTGGAAAAATAATATGTGAatgatgttttttcttaaaaatataatttgacagATCTCCATGAAAGACTAAAGTGCAGACAAAGACATAAGATAGGCCTTAGTAATTTTTAGGTGTTTTTGAGACTTCCGTCTGCagccatttcatttcattataaatgtatcagataatattaatagtaataataataaaaaatggcaTATGTTTGACTGggatatatgtatgtttttgtgtgttacaATTAAGTCTTAAATTGACATTAAAAGTTACATTATTAAGCCAAAATAA

Function

symbol description
tnni1d Predicted to be involved in cardiac muscle contraction and skeletal muscle contraction. Predicted to be part of troponin complex.

NR:

description
PREDICTED: troponin I, slow skeletal muscle-like

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236774.1 False 1988 mRNA 0.40 9 13497880 13501524
XM_043236775.1 True 2090 mRNA 0.40 9 13497740 13501524

Neighbor

gene id symbol gene type direction distance location
scyl2 scyl2,si:ch211-244b2.1,LOC107755162 coding upstream 38845 13446957 ~ 13458895 (+)
depdc4 si:ch211-265o23.1,LOC107755163,LOC107689232,LOC107597010 coding upstream 50919 13440636 ~ 13446821 (+)
metap2a metap2a,LOC107689230,LOC107597011,LOC107755160,LOC106576295,LOC100194705 coding upstream 65053 13423238 ~ 13432687 (+)
lamb1b lamb1b,LOC107755155,LOC107689224 coding upstream 152679 13326365 ~ 13345061 (+)
LOC122342558 LOC107689220,LOC107755152 coding upstream 179670 13313892 ~ 13318070 (+)
LOC122342856 LOC107689257,LOC107726829 coding downstream 22426 13523950 ~ 13530743 (+)
iqsec3a iqsec3,iqsec3a,LOC107689235,LOC107748472,LOC107689713,LOC107584743 coding downstream 33600 13535124 ~ 13632058 (+)
LOC122343497 parp11,LOC107726831,LOC107689238,LOC107597042,LOC107748476,LOC107584716,LOC108280019 coding downstream 164135 13665659 ~ 13669633 (+)
LOC122343498 LOC107726847,LOC107689239,LOC107597006 coding downstream 168249 13669773 ~ 13673709 (+)
LOC122343279 LOC107689243,LOC107689721,LOC107716183,LOC106575984,LOC108427068 coding downstream 288120 13789644 ~ 13827064 (+)
G28298 NA non-coding upstream 27605 13467404 ~ 13470135 (+)
G28295 NA non-coding upstream 57718 13437936 ~ 13440022 (+)
G28248 NA non-coding upstream 123774 13247769 ~ 13373966 (+)
G28267 NA non-coding upstream 176624 13312934 ~ 13321116 (+)
G28256 NA non-coding upstream 265757 13231664 ~ 13231983 (+)
G28312 NA non-coding downstream 9332 13510856 ~ 13513593 (+)
LOC122343375 NA non-coding downstream 15106 13516630 ~ 13520457 (+)
G28446 NA non-coding downstream 256443 13757967 ~ 13760112 (+)
G28486 NA non-coding downstream 326501 13828025 ~ 13828537 (+)
G28503 NA non-coding downstream 490499 13992023 ~ 13992831 (+)
vezt vezt,LOC107689227,LOC107667718,LOC107597031,LOC107755144 other upstream 64134 13405929 ~ 13433606 (+)
G28252 si:dkey-183c16.7,LOC107689220,LOC107755152 other upstream 182056 13305669 ~ 13315684 (+)
kin kin,LOC102791470 other upstream 343382 13150736 ~ 13154358 (+)
gnai1 gnai1,LOC107590838,LOC100706147,LOC103382723,LOC106609493 other upstream 1682435 11796982 ~ 11815305 (+)
ndufb2 ndufb2,LOC107755897,LOC107578274,LOC107694192,LOC107590801,LOC107710676 other upstream 1806611 11689314 ~ 11691129 (+)
LOC122342701 im:7143923,cpne8,LOC101886030,LOC107566841,LOC108279828,LOC107689738,LOC108427072,LOC103365370,LOC107666208,LOC102193326,LOC102297242 other downstream 381370 13882894 ~ 13961098 (+)
trmu trmu other downstream 483993 13985517 ~ 13991772 (+)
tbc1d22a tbc1d22a,LOC107689730,LOC107710738 other downstream 675906 14177430 ~ 14294618 (+)
tafa5a fam19a5a,fam19a5,LOC107552289,LOC107689731,LOC107563619,LOC107721159,LOC106609108,LOC103356475 other downstream 898505 14400029 ~ 14482821 (+)
LOC122343376 LOC107699368,LOC107601007,LOC107733210,LOC105896948,LOC104933464 other downstream 1656231 15157755 ~ 15214432 (+)

Expression


Co-expression Network