zdhhc17 (zdhhc17,LOC107708015,LOC107658960,LOC107656450)


Basic Information

Item Value
gene id zdhhc17
gene name zdhhc17,LOC107708015,LOC107658960,LOC107656450
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 343592 ~ 360922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043236781.1
ACGCGCGCTTCTCTCCTGTTTATCGCCCCCTAAACGTTTTTCCCGTGATGCTCCGCGCGGTCGATCGGCAAGATGGCGGACGCTCTGGACGAATTTAAGAAAGAAACTGGATGCGTCCCGATCCTCCATCCCGAGGAAATTAAACCCCAGAGTCACTATAACCATGACTACAGCGAGAGCGTCAGCCGCAAGAGCCACGTGGACGACTACAGCACTTGGGACATCGTCAAAGCCACCCAgTACGGGATCTTCGAGCGATGCCGTGAGCTGGTGGAGGCCGGATATGACGTGCGTCAGCCGGATAAAGAAAATGTCACACTCCTGCACTGGGCGGCAATCAACAACCGCATAGACCTGGTGAAGTACTACATATCTAAAGGTGCCATAGTGGACCAGCTGGGAGGAGATCTCAACTCTACACCGCTTCACTGGGCTACAAGACAGGGTCATCTCTCAATGGTGGTGCAGTTAATGAAGTACGGCGCTGATCCGTCTCTCATCGACGGCGAGGGATGCAGTTGTGTGCACTTGGCCACTCAGTTTGGACACACCTCCATTGTGGCGTATCTCATTGCCAAAGGACAGGATGTGGATATGATGGATCAGAATGGCATGACCCCTCTGATGTGGGCGGCTTATCGGatgcacagTGTTGACCCGACACGGCTGTTGCTGACATTTAACGTGTCGGTGAATCTGGGTGATAAGTATCATAAGAATACAGCTCTGCACTGGGCGGTTCTGGCTGGAAACACTACCGTCATCAGCCTGCTGTTGGAGGCCAACGCTAATGTCGACGCACAGAACATCAAGGGGGAGACGCCACTGGATTTGGCCAAACAGAGGAAAAATGTGTGGATGATAAATCATCTGCAGGAGGCCAGACAAGCCAAAGGCTACGACAGTCCCTCGTACCTAAAGCGGCTCAAAATGGACAAGGAGTTCAGGCAGAAGGTGATGTTGGGAACTCCCTTCCTGGTGATCTGGCTGGTGGGATTCATCGCTGATCTGGACATCGACTCCTGGCTCATCAAGGGTGTGATGTATGCGGCGGTGTGGCTCGTGGTGCAGTTTCTGTCCGAGTCATTCTTTGATCACTCCATGCACAGTGCTCTTCCTCTGGGCATCTACCTAGCCACTAAATTCTGGATGTACATCACCTGGTTTTATTGGTTCTGGAATGATCTCCCTTTCGTCACCATCCACCTGCCCTTCCTGCTCAACAGTCTGGCTCTCTTCTACAACTTTGGCAAGTCCTGGAAGTCCGACCCCGGTATCATCAAAGCGTCCGAGGAGCAGAAGAAAAAGACTATAGTTGAGCTGGCAGAAACGGGCTGTCTGGATCTCAGCATATTCTGCAGCACCTGTTTGATACGGAAGCCAATCAGATCGAAACACTGCGCCGTTTGCAATCGATGCATCGCCAAGTTTGATCACCACTGCCCGTGGGTCGGCAACTGCGTGGGAAGTGGAAACCACCGTTACTTCATGGGCTACTTGTTCTTCCTGTTGTGTATGATTTGTTGGATGATATACGGATGCATTTGCTACTGGAGGATTCACTGTGCTACCAGCTACACTAAAGACGGCTTTTGGATCTACATCACCCAGATCGCCACCTGCTCGCCGTGGATGTTCTGGATGTTCCTCAACAGCGTGTTTCACTTCATGTGGGTCGCCGTGCTCATCATGTGCCAGCTGTACCAGATCGCTGTTCTGGGCATCACTACAAACGAGCGCATGAACGCCAGAAGATACAAGCACTTTAAAGTTACAGCCACGTCCATTGAGAGCCCTTTCAAtCACGGCTGCATGAGGAACCTCATAGATTTCTTCGAGCTGCGCTGCTGCGGTCTGCTGCGGCCCGTGGCGGTGGACTGGACCTCGCAGTACACAATAGAGTACGACCAGACGTCCGGCTCAGGATACCAGCTGGTGTAGCCACGGAGCGAGAGGGAGAAGAGGGGAAGTGCTGCTCAAACCGGGACCATCTCCTTCACCGAGACTGCAAACCTCACCCAGTCAGGATAATAACGCATGCTGTCATTGGTTACCGTCACCAACTCCACCCGCCCACTGCACCCGAGACGCAGGGACACGAGgaacaggaagaggaggagTTCAGTGCCATCAGAGGCGGATCCTGGATTGGTCAGCAGAGACGTTTTGTGTTTCGTTTCGCACATCGGCTGCTTTTCGTTTTTTCACCTTGGTTTTCTTCCTGTGACCCCTTTCTTGTTACGATATCGGATCTCCGCCGCGGAACTTCGCGTAGGAACGAGCGTTAGCATAGCAAAAGCGTTTGCGGGATCGTTCTGGACTAAATTAGACTTTTATTGTTGTTCGTTCGTCCtcgcgtcgcgtcgcgtcaAACTTTCGTGATTTGACTTTCTCAAGTGGAACgcaaaaggagatatttagaAGAAAGTTCAGGCTGCTTTTTTCCGTGCAAGtagaaagatgttttttttgtgtgttctgcAGAGAAAGCAACGCGCGTCAGTTTGAAACGACGTGATGGTTAGTAAATAACGATTCCTTTAAGCTGCCTTGATTCGTCTGATCGTGAATCGGATCAAAACAGGCATGCGTTCATACGACTAAAGAGATGCCCTGTTTATATAATGTGacttaacatatttattttaacctaTTTATGTAGTATTTTTCGAAGAGTAATTAATGGAATCACGAGGTCTTCATTTCAGCATATATGTACGTTTGCAGCATGTTTAATAGTTTAGCTGGGGCGAATCAAGAAGACGAAGCCGGGTCACGTCTCACccgaaaacatttttagttggAAGACACGCTTTTGCAAGTTGTTATCATTCgataaatcaaatgcattttctgcGTAATTCTCATTACCGTCATGCACAGAATCCATATTACTGTACTCAGATATCgaagtatttatattatactgcctttaaattatgctgtttttttatcattgtattATAGCCGTTGTTTAATGCAAAACTGTATTACAACAGAAACACCCGAACGCATTCTGGTAATGAGCAGCAGTCAACATTTAAAACTATCAGCAAAATTGtctcaaaacataaaaccaagATGTTTTGAGcctttttgatccactttaaatgttgactactgtatgtatgcgataaataaacacacacatctcaaaTGAACTATGTATTTTTGCGCGCACACATAATTTGTTCATTCCacgtttcgttttgttttttaagcgTGTGACCGGTTCCGTAAAACGTGTTTCCCATTTAAGCCCGACTTCTCTTGAACTTGACCCGGCTTTGGTCGTTTCACGAGCAGGTTCTTGATGCGTTCGCGAGATTAATCCAGGTTCCCTCCGCATTTACAAGAAATAACACGCTCGTATGTGAACctctatatttattatctatgaGTAGTTTTAGGAAGCGTATACATTTAAAGTTGAAATGCTGTTGAAAAGCCATTAAGTGGATCTGATAGCTGTATGAACTTAAAGGAAGACGCCGTTTAACACGCCTGAGGGGCTCCTTCCGtctttcacctttttttttttgtgtggcgGCGACATTTATTCGTCTGGCCACAACAATGCactgatcttttttttgttgttgttgttgttgtcgtgTTTGTTTGGTTCGCCGTTACTGAAGAAGCGAGCTCGTTTTCCCCAGCGTCGCCGAGGGATCTTCATGTTTACGTAAATAGAGGAAGCTCCTCCCCCCTTTGCTCTCCTccatttcctcttcctgtcGGCGTGGCGTTGTCATGGCAGCGGCTGACAGGACGAACTGATGTAAAGAATGTGCATCTGTACATAAACGGACTAGATTCATTATTCTGTGAGTGActtttgttggggttttttttaattttcgtCCGTGTTAGTTGAAGCTgctcctgattttttttttatgtcttacCAAAAAgcgaaaaaccaaaaaaaatcgaCTTATCAAAGTGTATGACTGTAGCTTTTAGTGGCGTCTGGCACCGCTGTGTATAGACCTTTGACCTTGCAAGCGTCCACTGCATGTGTAAAGCCTGGACATAGTGATCACCCTGTCGCCCGAAAGACGCCCCGTCTTGTAAATAGTGAATGTTCAGTATTTGCaactggggttttttttccccttccctTTTCAgttggtttttacattttaaacccGATGTGTGTATCGTTCTCGTGTGTCCCTCATGCTCCGGGGCCGACCGGAGCTCTGCAGATGTATTATATCTGAATGTCCCATTAATATTCAGCCTAAAAGGTTTCTTTTGTACGTTTCGTTGCTGGGTTTGTTGTACCACTGGATGTACAAACTGTAAATGCGAGAGAAGAAGTAGACGTGAGCAGATTAGGCACAGTGAcggtcattcattcattcattcacgtGACACTGTTTTTAGAGAATATATTCACTCTGTTGTTCCTCTGCCTTTACGGTTCGGCCGGCTGTTTTCCCACCATGTGAAAAGCACATGCTCATCTCCAGTGCCTCAGCTGAGATCAGGACGTCACCCTACTCTGCTTCAGATGTAACTTATTGGGCATGGTTCAATTTTAAtggctttattaataaaacattcgAAGGTGAAA

Function

symbol description
zdhhc17 Predicted to enable palmitoyltransferase activity. Acts upstream of or within axonogenesis. Predicted to be located in several cellular components, including Golgi apparatus; cytoplasmic vesicle membrane; and presynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Is expressed in nervous system and spinal cord. Orthologous to human ZDHHC17 (zinc finger DHHC-type palmitoyltransferase 17).

NR:

description
PREDICTED: palmitoyltransferase ZDHHC17

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20032 ZDHHC13_17, HIP14; palmitoyltransferase ZDHHC13/17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043236781.1 True 4585 mRNA 0.47 17 343592 360922

Neighbor

gene id symbol gene type direction distance location
LOC122343357 LOC107658963,LOC107708011,LOC107555883 coding upstream 130433 205505 ~ 213159 (+)
glipr1a NA coding upstream 144056 195092 ~ 199536 (+)
frs2a frs2,frs2a,LOC107658966,LOC107590545,LOC107729158 coding upstream 236287 90208 ~ 107305 (+)
yeats4 yeats4,LOC107555875,LOC107590554,LOC106609801,LOC107717680 coding upstream 254440 87004 ~ 89152 (+)
LOC122343428 lmod2b,LOC107726005,LOC107584027,LOC107656401,LOC107581005,LOC107711505 coding upstream 325688 13818 ~ 17904 (+)
LOC122342832 NA coding downstream 499674 860596 ~ 863551 (+)
LOC122342829 LOC107705336,LOC107583937,LOC107656238 coding downstream 506274 867196 ~ 888759 (+)
fgd4b LOC107658950,LOC107705337,LOC107656390,LOC107590534,LOC107584024 coding downstream 529775 890697 ~ 908324 (+)
nampt1 nampt,nampta,LOC107658946,LOC107705339,LOC107656408,LOC107718548,LOC102790888 coding downstream 556660 917582 ~ 931678 (+)
sypl1 sypl1,LOC107590538,LOC107658778,LOC107583939,LOC107656429,LOC107718552 coding downstream 573124 934046 ~ 937823 (+)
G24594 NA non-coding upstream 28026 253265 ~ 315566 (+)
G24587 NA non-coding upstream 60751 242566 ~ 282841 (+)
G24586 NA non-coding upstream 61608 215975 ~ 281984 (+)
G24599 NA non-coding upstream 81628 261456 ~ 261964 (+)
G24597 nap1l1,LOC107555881,LOC107658961 non-coding upstream 82889 259399 ~ 260703 (+)
G24628 NA non-coding downstream 1520 362442 ~ 362768 (+)
G24631 NA non-coding downstream 11452 372374 ~ 372853 (+)
G24633 NA non-coding downstream 13636 374558 ~ 374844 (+)
G24634 NA non-coding downstream 15003 375925 ~ 376208 (+)
G24635 e2f7,LOC107656240,LOC107707966,LOC107658780 non-coding downstream 18281 379203 ~ 379444 (+)
G24609 NA other upstream 48523 293235 ~ 295069 (+)
cmah cmah,LOC107555874,LOC107729160,LOC107656456,LOC107590555 other upstream 149409 184716 ~ 194183 (+)
G24555 cpsf6 other upstream 258630 83688 ~ 84962 (+)
G24632 LOC107584022 other downstream 12605 373527 ~ 374082 (+)
gpr22a gpr22a,LOC107658958,LOC107583929,LOC107729153,LOC107708019,LOC107590528,LOC107656448 other downstream 73421 434343 ~ 439352 (+)
G24771 plekha5,LOC107584023,LOC107658747 other downstream 293170 654092 ~ 665530 (+)
LOC122342481 LOC107584054,LOC107658775,LOC107725972,LOC107711476,LOC107581286,LOC107656415,LOC107725915 other downstream 884656 1245578 ~ 1249169 (+)
ndufa5 ndufa5,LOC107725958,LOC107658774,LOC107579922 other downstream 927375 1288297 ~ 1291224 (+)

Expression


Co-expression Network